##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779742_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 117327 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.47878152513914 34.0 34.0 34.0 34.0 34.0 2 33.49941616166782 34.0 34.0 34.0 34.0 34.0 3 33.52057923581103 34.0 34.0 34.0 34.0 34.0 4 33.572886036462194 34.0 34.0 34.0 34.0 34.0 5 33.562223529110945 34.0 34.0 34.0 34.0 34.0 6 37.05246021802313 38.0 37.0 38.0 35.0 38.0 7 37.06963444049537 38.0 37.0 38.0 36.0 38.0 8 36.86314318102398 38.0 37.0 38.0 35.0 38.0 9 36.88580633613746 38.0 37.0 38.0 35.0 38.0 10-11 36.78187458982161 38.0 37.0 38.0 34.0 38.0 12-13 36.755273722161135 38.0 37.0 38.0 34.0 38.0 14-15 36.792792792792795 38.0 37.0 38.0 34.0 38.0 16-17 36.74152155940236 38.0 37.0 38.0 34.0 38.0 18-19 36.75059875391001 38.0 37.0 38.0 34.0 38.0 20-21 36.79058102568037 38.0 37.0 38.0 34.0 38.0 22-23 36.67154619141374 38.0 37.0 38.0 34.0 38.0 24-25 36.655207241299955 38.0 37.0 38.0 34.0 38.0 26-27 36.53394359354624 38.0 37.0 38.0 34.0 38.0 28-29 36.47690216233263 38.0 37.0 38.0 34.0 38.0 30-31 36.44312477093934 38.0 37.0 38.0 34.0 38.0 32-33 36.38664587008958 38.0 37.0 38.0 34.0 38.0 34-35 36.31588210727284 38.0 37.0 38.0 34.0 38.0 36-37 36.353337253999506 38.0 37.0 38.0 34.0 38.0 38-39 36.06462280634466 38.0 37.0 38.0 34.0 38.0 40-41 36.3227177035124 38.0 37.0 38.0 34.0 38.0 42-43 36.4563357113026 38.0 37.0 38.0 34.0 38.0 44-45 36.45209968719902 38.0 37.0 38.0 34.0 38.0 46-47 36.47607967475517 38.0 37.0 38.0 34.0 38.0 48-49 36.457614189402264 38.0 37.0 38.0 34.0 38.0 50-51 36.40286123398706 38.0 37.0 38.0 34.0 38.0 52-53 36.35603484278981 38.0 37.0 38.0 34.0 38.0 54-55 36.36803975214571 38.0 37.0 38.0 34.0 38.0 56-57 36.37105269886727 38.0 37.0 38.0 34.0 38.0 58-59 36.30579065347277 38.0 37.0 38.0 34.0 38.0 60-61 36.37458982160969 38.0 37.0 38.0 34.0 38.0 62-63 36.36198402754694 38.0 37.0 38.0 34.0 38.0 64-65 36.38953096900117 38.0 37.0 38.0 34.0 38.0 66-67 36.33144118574582 38.0 37.0 38.0 34.0 38.0 68-69 36.153860577701636 38.0 37.0 38.0 34.0 38.0 70-71 35.515422707475686 38.0 36.5 38.0 29.5 38.0 72-73 34.56185277046204 38.0 36.0 38.0 23.0 38.0 74-75 34.46673399984658 38.0 36.0 38.0 23.0 38.0 76 33.86513760685946 38.0 34.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 3.0 22 4.0 23 31.0 24 51.0 25 69.0 26 162.0 27 362.0 28 592.0 29 973.0 30 1582.0 31 2356.0 32 3678.0 33 5665.0 34 8821.0 35 14812.0 36 20285.0 37 57879.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.35031152249695 19.11495222753501 12.018546455632547 31.516189794335492 2 19.088530346808493 18.76720618442473 38.61174324750484 23.532520221261944 3 18.354683917597825 21.411098894542604 34.03393933195258 26.200277855906997 4 14.047065040442524 22.791002923453256 34.37742378139729 28.78450825470693 5 14.047917359175639 33.276227978214735 37.97165187893665 14.704202783672981 6 28.029353857168427 40.00784133234465 16.809430054463167 15.153374756023762 7 26.376707833661477 28.15975862333478 20.43008003272904 25.0334535102747 8 23.148124472627785 38.59469687284257 18.11773930979229 20.139439344737358 9 23.08334824891116 16.330426926453416 18.83794863927314 41.74827618536228 10-11 24.65885942707135 26.531829843088122 26.53481295865402 22.274497771186514 12-13 24.243354044678547 20.07977703341942 26.81778277804768 28.859086143854356 14-15 22.879644071697054 20.972154746989183 21.011361408712403 35.13683977260136 16-17 27.175330486588766 26.799031765919185 21.057812779667085 24.967824967824967 18-19 26.637091206627627 23.757958526170448 22.35163261653328 27.253317650668645 20-21 22.80719697938241 23.111474767103907 21.783136021546618 32.298192231967064 22-23 23.342026984411092 26.87616661126595 22.006869688988896 27.774936715334064 24-25 27.015094564763437 27.151039402695034 21.849616882729467 23.984249149812065 26-27 26.472593691136737 27.64879354283328 23.061187961850212 22.81742480417977 28-29 22.47436651410161 23.407229367494267 27.840991417150356 26.27741270125376 30-31 22.782053576755565 21.818933408337383 32.32035251902802 23.07866049587904 32-33 25.492427148056287 23.241879533270264 24.349467726951172 26.91622559172228 34-35 23.506098340535427 23.054369411985306 27.106292669206578 26.333239578272693 36-37 22.677644531949166 29.852889786664623 23.59516564814578 23.87430003324043 38-39 22.012835920120686 24.39378830107307 27.11609433463738 26.47728144416886 40-41 22.045224031979 22.04863330691145 28.43889300842943 27.467249652680113 42-43 26.491344703265234 22.101477068364485 27.838434460951017 23.568743767419264 44-45 21.983430923828276 26.23607524269776 28.461905614223493 23.318588219250472 46-47 26.040468093448226 22.372088266128003 25.056039956702207 26.531403683721567 48-49 25.373954844153516 21.630144808952757 24.44705822189266 28.548842125001066 50-51 21.850043042096022 21.95019049323685 28.624698492248164 27.575067972418964 52-53 20.978547137487535 21.91908085947821 33.04993735457312 24.052434648461137 54-55 20.84558541512184 21.778022109147937 29.762970160321156 27.61342231540907 56-57 24.436830397095296 22.07633366573764 25.936911367374943 27.54992456979212 58-59 21.200150008097026 22.7177035124055 31.69006281589063 24.392083663606844 60-61 24.46879234958705 27.10373571300724 24.835715564192384 23.591756373213325 62-63 20.39982271770351 32.69153732729892 23.155369181859246 23.753270773138325 64-65 19.960878570150093 33.64442967091974 22.52678411618809 23.867907642742082 66-67 19.7963810546592 33.199093132867965 22.658893519820673 24.345632292652162 68-69 19.89141459340135 33.493995414525216 22.60434512090141 24.010244871172024 70-71 20.258337808006683 32.210403402456386 22.837880453774492 24.693378335762443 72-73 20.30521533832792 29.107110895190363 23.91052357939775 26.677150187083964 74-75 20.626539500711687 28.270560058639525 24.447484381259216 26.65541605938957 76 20.58179276722323 28.038729363232672 24.825487739395026 26.553990130149067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 1.0 14 1.0 15 3.5 16 10.5 17 15.0 18 15.0 19 34.0 20 43.5 21 34.0 22 58.5 23 117.5 24 201.5 25 251.0 26 307.0 27 417.0 28 593.0 29 715.0 30 824.5 31 1017.5 32 1419.0 33 1737.0 34 1895.5 35 2279.0 36 2747.5 37 2991.0 38 3443.5 39 5813.5 40 8285.5 41 8620.0 42 8400.0 43 7929.0 44 7105.0 45 6384.5 46 6017.0 47 5916.0 48 5465.0 49 4911.5 50 4708.0 51 4344.5 52 3487.0 53 2905.0 54 2817.0 55 2693.5 56 2338.0 57 1961.0 58 1816.0 59 1697.0 60 1511.0 61 1471.0 62 1498.0 63 1501.0 64 1488.5 65 1487.5 66 1511.0 67 1520.0 68 1540.5 69 1544.5 70 1486.5 71 1445.0 72 1433.5 73 1388.5 74 1260.0 75 1165.0 76 1086.5 77 919.0 78 751.0 79 672.0 80 581.5 81 412.0 82 280.5 83 228.0 84 179.0 85 96.0 86 52.0 87 42.0 88 33.5 89 17.0 90 6.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 117327.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.11539543327623 #Duplication Level Percentage of deduplicated Percentage of total 1 58.79690032815403 25.350516078992904 2 20.918831297196853 18.038473667612738 3 8.684220930692286 11.232708583701962 4 3.9200569327481913 6.760592191055767 5 2.1646305301862174 4.666445063796057 6 1.3363381172656466 3.4570047815080924 7 0.8539912228679872 2.5774118489350277 8 0.713636183924406 2.4614965012316006 9 0.45467125291582655 1.7642997775448106 >10 2.1231170679634683 13.58681292456127 >50 0.007907326137666548 0.2190459144101528 >100 0.01976831534416637 2.0063582977490264 >500 0.001976831534416637 0.6980490424199033 >1k 0.001976831534416637 0.8557280080458888 >5k 0.001976831534416637 6.325057318434801 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 7421 6.325057318434801 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 1004 0.8557280080458888 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 819 0.6980490424199033 RNA PCR Primer, Index 48 (95% over 23bp) CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 476 0.40570371696199514 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 411 0.35030299930962183 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 382 0.3255857560493322 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 302 0.2574002574002574 RNA PCR Primer, Index 48 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 149 0.12699549123390183 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 140 0.11932462263588091 No Hit TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT 136 0.11591534770342717 RNA PCR Primer, Index 48 (95% over 22bp) TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 132 0.11250607277097342 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.00511391239868061 0.0 2 0.0 0.0 0.0 0.00511391239868061 0.0 3 0.0 0.0 0.0 0.00511391239868061 0.0 4 0.0 0.0 0.0 0.006818549864907481 0.0 5 0.0 0.0 0.0 0.007670868598020916 0.0 6 0.0 0.0 0.0 0.00852318733113435 0.0 7 0.0 0.0 0.0 0.009375506064247786 0.0 8 0.0 0.0 0.0 0.009375506064247786 0.0 9 0.0 0.0 0.0 0.01022782479736122 0.0 10 0.0 0.0 0.0 0.011080143530474656 0.0 11 0.0 0.0 0.0 0.011932462263588092 0.0 12 0.0 0.0 0.0 0.012784780996701526 0.0 13 0.0 0.0 0.0 0.012784780996701526 0.0 14 0.0 0.0 0.0 0.012784780996701526 0.0 15 0.0 0.0 0.0 0.013637099729814962 0.0 16 0.0 0.0 0.0 0.014489418462928397 0.0 17 0.0 0.0 0.0 0.014489418462928397 0.0 18 0.0 0.0 0.0 0.015341737196041831 0.0 19 0.0 0.0 0.0 0.015341737196041831 0.0 20 0.0 0.0 0.0 0.016194055929155265 0.0 21 0.0 0.0 0.0 0.0170463746622687 0.0 22 0.0 0.0 0.0 0.018751012128495573 0.0 23 0.0 0.0 0.0 0.021307968327835877 0.0 24 0.0 0.0 0.0 0.022160287060949312 0.0 25 0.0 0.0 0.0 0.023864924527176184 0.0 26 0.0 0.0 0.0 0.029831155658970227 0.0 27 0.0 0.0 0.0 0.04772984905435237 0.0 28 0.0 0.0 0.0 0.07329941104775542 0.0 29 0.0 0.0 0.0 0.11080143530474656 0.0 30 0.0 0.0 0.0 0.1457465033623974 0.0 31 0.0 0.0 0.0 0.17557765902136763 0.0 32 0.0 0.0 0.0 0.22160287060949313 0.0 33 0.0 0.0 0.0 0.28467445685988735 0.0 34 0.0 0.0 0.0 0.3852480673672727 0.0 35 0.0 0.0 0.0 0.5071296462024939 0.0 36 0.0 0.0 0.0 0.695492086220563 0.0 37 0.0 0.0 0.0 1.0108500174725341 0.0 38 0.0 0.0 0.0 1.3500728732516811 0.0 39 0.0 0.0 0.0 1.7182745659566852 0.0 40 0.0 0.0 0.0 2.106079589523298 0.0 41 0.0 0.0 0.0 2.5757072114688007 0.0 42 0.0 0.0 0.0 2.995900346893724 0.0 43 0.0 0.0 0.0 3.439958406845824 0.0 44 0.0 0.0 0.0 3.886573422997264 0.0 45 0.0 0.0 0.0 4.452513061784585 0.0 46 0.0 0.0 0.0 4.9673135765850995 0.0 47 0.0 0.0 0.0 5.539219446504215 0.0 48 0.0 0.0 0.0 6.064247786102091 0.0 49 0.0 0.0 0.0 6.599503950497328 0.0 50 0.0 0.0 0.0 7.120270696429637 0.0 51 0.0 0.0 0.0 7.600126143172501 0.0 52 0.0 0.0 0.0 8.12600680150349 0.0 53 0.0 0.0 0.0 8.642511953770232 0.0 54 0.0 0.0 0.0 9.164983337168767 0.0 55 0.0 0.0 0.0 9.620973859384456 0.0 56 0.0 0.0 0.0 10.087192206397505 0.0 57 0.0 0.0 0.0 10.583241709069524 0.0 58 0.0 0.0 0.0 11.048607737349458 0.0 59 0.0 0.0 0.0 11.516530721828735 0.0 60 0.0 0.0 0.0 12.00405703716962 0.0 61 0.0 0.0 0.0 12.517152914503908 0.0 62 0.0 0.0 0.0 13.008088504777247 0.0 63 0.0 0.0 0.0 13.459817433327368 0.0 64 0.0 0.0 0.0 13.923478824141077 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCAGGAC 15 0.0022199133 70.00001 45 AATATCG 15 0.0022199133 70.00001 36 ATATCGT 15 0.0022199133 70.00001 37 GTTCTGA 25 2.3821658E-4 55.999996 11 ATCGTAT 25 2.3821658E-4 55.999996 39 TCTTTAT 45 2.6757334E-8 54.444443 1 CTTGTTG 20 0.0069365622 52.5 13 CTTAACT 20 0.0069365622 52.5 54 ATGGGAC 20 0.0069365622 52.5 61 TCGTTTA 20 0.0069365622 52.5 32 CAACGAC 20 0.0069365622 52.5 31 GGTCATC 20 0.0069365622 52.5 11 GCTTAAC 20 0.0069365622 52.5 13 ATCCATG 20 0.0069365622 52.5 15 GGTGAAT 20 0.0069365622 52.5 32 AAGGGAT 20 0.0069365622 52.5 30 ATTATAG 20 0.0069365622 52.5 69 CGGTAAA 20 0.0069365622 52.5 58 GCATGCT 20 0.0069365622 52.5 23 CGTTTAT 20 0.0069365622 52.5 33 >>END_MODULE