##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779741_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 125327 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.545748322388633 34.0 32.0 34.0 21.0 34.0 2 28.468255044802795 34.0 23.0 34.0 12.0 34.0 3 27.417308321431136 33.0 23.0 34.0 11.0 34.0 4 30.397097193741175 34.0 31.0 34.0 21.0 34.0 5 29.739489495479823 34.0 31.0 34.0 11.0 34.0 6 32.35495144701461 37.0 31.0 38.0 12.0 38.0 7 33.277689564100314 37.0 34.0 38.0 21.0 38.0 8 32.575334923839236 37.0 31.0 38.0 12.0 38.0 9 34.09544631244664 37.0 34.0 38.0 24.0 38.0 10-11 33.99475771382065 38.0 34.0 38.0 22.5 38.0 12-13 32.64793300725302 37.5 30.5 38.0 18.5 38.0 14-15 33.00270891348233 37.0 32.5 38.0 16.0 38.0 16-17 32.543079304539326 37.0 30.0 38.0 18.0 38.0 18-19 33.065237339120856 37.0 32.5 38.0 16.0 38.0 20-21 32.03150558139906 36.5 30.0 38.0 17.0 38.0 22-23 31.947768637244966 36.5 29.0 38.0 17.0 38.0 24-25 33.55800825041691 37.0 33.5 38.0 22.5 38.0 26-27 31.814712711546598 37.0 29.0 38.0 16.0 38.0 28-29 34.40182881581782 37.5 34.5 38.0 25.5 38.0 30-31 34.931658780629874 38.0 36.0 38.0 26.5 38.0 32-33 35.00995795000279 38.0 36.0 38.0 27.0 38.0 34-35 35.087511071038165 38.0 36.0 38.0 27.0 38.0 36-37 32.45066107063921 37.0 30.5 38.0 16.5 38.0 38-39 30.24040709503938 35.0 25.0 38.0 11.0 38.0 40-41 31.96354337054266 36.5 29.5 38.0 16.0 38.0 42-43 33.269403241121225 37.0 32.5 38.0 18.5 38.0 44-45 35.163899239589234 38.0 36.0 38.0 27.0 38.0 46-47 33.40550320361933 37.5 32.0 38.0 19.0 38.0 48-49 32.730173865168716 37.0 30.5 38.0 18.0 38.0 50-51 30.123469005082704 35.0 24.5 38.0 11.0 38.0 52-53 34.2354560469811 37.0 35.0 38.0 25.0 38.0 54-55 33.120855841119635 37.0 30.5 38.0 18.5 38.0 56-57 33.59598889305576 37.5 33.5 38.0 19.0 38.0 58-59 34.960990050029125 38.0 35.5 38.0 26.5 38.0 60-61 35.42550687401757 38.0 37.0 38.0 31.0 38.0 62-63 35.27378378162726 38.0 36.5 38.0 29.0 38.0 64-65 34.927449791345836 38.0 36.0 38.0 27.5 38.0 66-67 32.52615956657384 37.0 31.5 38.0 11.0 38.0 68-69 32.592573826868914 37.0 32.5 38.0 16.0 38.0 70-71 31.965729651232376 37.0 29.5 38.0 14.0 38.0 72-73 30.59657136929792 35.5 26.0 38.0 11.0 38.0 74-75 33.31643221332993 37.0 32.5 38.0 18.0 38.0 76 34.0262593056564 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 8.0 13 49.0 14 167.0 15 296.0 16 505.0 17 748.0 18 985.0 19 1101.0 20 1056.0 21 1085.0 22 1062.0 23 1177.0 24 1399.0 25 1707.0 26 1993.0 27 2414.0 28 3042.0 29 3830.0 30 4774.0 31 6492.0 32 8861.0 33 12660.0 34 16756.0 35 21123.0 36 22236.0 37 9801.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 39.044260215276836 21.057713022732532 12.270300892864267 27.627725869126362 2 19.543274793141144 19.339807064718695 38.96287312390786 22.154045018232303 3 21.28352230564842 19.207353563078986 35.32997678074158 24.17914735053101 4 13.80069737566526 18.44055949635753 35.48955931283761 32.2691838151396 5 14.311361478372579 31.685909660328583 38.42747372872565 15.575255132573188 6 28.371380468693896 34.01501671627024 17.248477981600132 20.365124833435733 7 26.374205079512 28.457555036025756 22.421345759493168 22.74689412496908 8 22.592099068835925 32.94900540186872 19.668547080836532 24.790348448458833 9 23.40277833188379 16.724249363664654 21.75030121202933 38.12267109242222 10-11 24.08658948191531 25.35886121905096 27.535168000510662 23.019381298523065 12-13 23.948151635322 21.815331093858468 29.977179697910266 24.25933757290927 14-15 22.596487588468566 24.48195520518324 24.985039137615995 27.936518068732198 16-17 23.285485170793205 25.69877201241552 27.47851620161657 23.537226615174703 18-19 21.49217646636399 25.56113207848269 28.768740973613028 24.177950481540293 20-21 23.296256991709686 25.24316388328134 28.534553607762092 22.92602551724688 22-23 23.024567730816184 24.836228426436442 29.041228147167008 23.09797569558036 24-25 22.129309725757416 26.792311313603612 26.05105045201752 25.027328508621444 26-27 22.066274625579485 25.26151587447238 28.854915540944887 23.817293959003248 28-29 22.047124721727958 26.637915213800696 27.6081770089446 23.706783055526742 30-31 22.36309813527811 26.99538008569582 27.03407884972911 23.60744292929696 32-33 21.983690665219786 27.04285588899439 27.104694120181605 23.86875932560422 34-35 22.036352900811476 26.496684672895704 27.641290384354527 23.82567204193829 36-37 22.671491378553704 25.16975591851716 30.143145531290145 22.015607171638994 38-39 22.71577553121035 24.006798215867292 32.80697694830324 20.470449304619116 40-41 22.068269407230684 25.279867865663423 26.51703144573795 26.134831281367944 42-43 20.945606293935064 25.912213649093967 27.114269072107366 26.027910984863595 44-45 21.31543881206763 26.099723124306813 28.49066841143568 24.09416965218987 46-47 22.190749000614392 25.216832765485492 29.57263797904681 23.019780254853302 48-49 22.248597668499208 25.2786709966727 29.525162175748243 22.947569159079848 50-51 22.677874679837544 23.501320545453094 32.2264954878039 21.594309286905457 52-53 20.901721097608654 26.104909556599935 28.85691032259609 24.136459023195318 54-55 21.646173609836666 25.612996401413902 29.258260390817618 23.48256959793181 56-57 21.75947720762485 25.484532463076594 28.907976732866818 23.848013596431734 58-59 20.561810304244098 26.192280992922512 28.879251877089533 24.366656825743853 60-61 20.31525529215572 26.019133945598316 28.48428511015184 25.181325652094124 62-63 20.318047986467402 26.29401485713374 28.541335865376176 24.846601291022687 64-65 20.553831177639296 26.146002058614666 28.359810735116938 24.940356028629107 66-67 19.431567020673917 24.766810024974667 26.133235456046982 29.668387498304437 68-69 19.95044112189808 25.25427854324032 26.58303107205989 28.212249262801713 70-71 19.772275726698957 24.74287264516026 25.857556631851075 29.627294996289706 72-73 19.30270412600637 23.95932241256872 25.259920049151418 31.478053412273493 74-75 20.756102037071024 25.941337461201496 26.82382886369258 26.4787316380349 76 21.165431231897355 26.25212444245853 26.77555514773353 25.806889177910584 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 1.0 11 0.5 12 1.0 13 3.0 14 6.0 15 12.5 16 31.5 17 45.0 18 63.0 19 103.0 20 159.5 21 194.0 22 252.0 23 364.0 24 532.0 25 646.0 26 742.0 27 979.0 28 1263.0 29 1406.0 30 1543.5 31 1945.0 32 2435.5 33 2662.0 34 2988.5 35 3580.5 36 4061.0 37 4276.0 38 4592.5 39 5215.5 40 5776.5 41 6134.5 42 6238.0 43 6381.5 44 6589.0 45 6660.0 46 6667.0 47 6586.5 48 6390.5 49 6076.0 50 5877.0 51 5662.0 52 5195.5 53 4754.5 54 4565.0 55 4319.5 56 3783.0 57 3282.5 58 3073.0 59 2825.5 60 2328.0 61 1917.5 62 1757.0 63 1635.0 64 1354.0 65 1087.5 66 944.5 67 909.0 68 833.0 69 700.5 70 605.0 71 566.0 72 519.0 73 438.5 74 379.5 75 354.0 76 308.0 77 246.5 78 200.0 79 169.0 80 143.5 81 112.0 82 92.5 83 79.0 84 66.5 85 42.0 86 27.0 87 24.0 88 22.0 89 17.0 90 9.0 91 2.5 92 1.0 93 1.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.017155122200323954 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 125327.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 97.97368814852938 #Duplication Level Percentage of deduplicated Percentage of total 1 98.19094053168463 96.20128586662064 2 1.6009092117039707 3.136939597231856 3 0.17113310579696492 0.5029962461772337 4 0.02702125849280004 0.10589489411817568 5 0.006997611677141793 0.034279091212039876 6 0.0019988818386622743 0.011750269554411396 7 9.993988058243238E-4 0.006854035085649147 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 7.979126604801838E-4 0.0 9 0.0 0.0 0.0 7.979126604801838E-4 0.0 10 0.0 0.0 0.0 7.979126604801838E-4 0.0 11 0.0 0.0 0.0 7.979126604801838E-4 0.0 12 0.0 0.0 0.0 7.979126604801838E-4 0.0 13 0.0 0.0 0.0 0.0015958253209603676 0.0 14 0.0 0.0 0.0 0.0023937379814405516 0.0 15 0.0 0.0 0.0 0.0023937379814405516 0.0 16 0.0 0.0 0.0 0.0023937379814405516 0.0 17 0.0 0.0 0.0 0.0023937379814405516 0.0 18 0.0 0.0 0.0 0.0023937379814405516 0.0 19 0.0 0.0 0.0 0.005585388623361287 0.0 20 0.0 0.0 0.0 0.00638330128384147 0.0 21 0.0 0.0 0.0 0.007181213944321654 0.0 22 0.0 0.0 0.0 0.02074572917248478 0.0 23 0.0 0.0 0.0 0.021543641832964963 0.0 24 0.0 0.0 0.0 0.027926943116806435 0.0 25 0.0 0.0 0.0 0.029522768437766803 0.0 26 0.0 0.0 0.0 0.029522768437766803 0.0 27 0.0 0.0 0.0 0.029522768437766803 0.0 28 0.0 0.0 0.0 0.03111859375872717 0.0 29 0.0 0.0 0.0 0.03750189504256864 0.0 30 0.0 0.0 0.0 0.04149145834496956 0.0 31 0.0 0.0 0.0 0.0446831089868903 0.0 32 0.0 0.0 0.0 0.05346014825217232 0.0 33 0.0 0.0 0.0 0.057449711554573235 0.0 34 0.0 0.0 0.0 0.07181213944321654 0.0 35 0.0 0.0 0.0 0.08697247999234003 0.0 36 0.0 0.0 0.0 0.11011194714626538 0.0 37 0.0 0.0 0.0 0.19548860181764505 0.0 38 0.0 0.0 0.0 0.27926943116806435 0.0 39 0.0 0.0 0.0 0.38938137831432973 0.0 40 0.0 0.0 0.0 0.5346014825217231 0.0 41 0.0 0.0 0.0 0.729292171678888 0.0 42 0.0 0.0 0.0 0.9231849481755727 0.0 43 0.0 0.0 0.0 1.1434088424681035 0.0 44 0.0 0.0 0.0 1.4346469635433705 0.0 45 0.0 0.0 0.0 1.6556687704963815 0.0 46 0.0 0.0 0.0 1.9157882978129215 0.0 47 0.0 0.0 0.0 2.2509116152145987 0.0 48 0.0 0.0 0.0 2.5142227931730594 0.0 49 0.0 0.0 0.0 2.730457124163189 0.0 50 0.0 0.0 0.0 3.0935073846816725 0.0 51 0.0 0.0 0.0 3.4972511908846458 0.0 52 0.0 0.0 0.0 3.8666847526869708 0.0 53 0.0 0.0 0.0 4.3366553097097995 0.0 54 0.0 0.0 0.0 4.845723587096156 0.0 55 0.0 0.0 0.0 5.211167585596081 0.0 56 0.0 0.0 0.0 5.614113479138574 0.0 57 0.0 0.0 0.0 5.981951215619938 0.0 58 0.0 0.0 0.0 6.2604227341275225 0.0 59 0.0 0.0 0.0 6.59873770217112 0.0 60 0.0 0.0 0.0 6.815769945821731 0.0 61 0.0 0.0 0.0 7.059133307268186 0.0 62 0.0 0.0 0.0 7.24903652046247 0.0 63 0.0 0.0 0.0 7.505964397137089 0.0 64 0.0 0.0 0.0 7.7341674180344215 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAG 20 7.901122E-5 70.00001 62 ATTCGGT 15 0.0022202684 70.0 1 CAACGAT 20 0.0069376617 52.500004 39 GAGCGTC 20 0.0069376617 52.500004 23 TGCGAAC 20 0.0069376617 52.500004 26 TGAGCGT 20 0.0069376617 52.500004 22 CGGTGGT 30 5.85926E-4 46.666664 46 TACACCG 30 5.85926E-4 46.666664 5 TACAGAT 40 4.571292E-5 43.750004 5 ACACCGA 35 0.0012514922 40.0 6 GTAATAG 35 0.0012514922 40.0 51 GGTATAG 35 0.0012514922 40.0 1 TCGTATG 35 0.0012514922 40.0 9 CTCTCGG 35 0.0012514922 40.0 42 GCTCTCG 40 0.0024112435 35.000004 41 CCGGTGG 40 0.0024112435 35.000004 45 TCGGTGG 55 2.978365E-4 31.81818 45 TACCATT 45 0.0042939675 31.111109 27 AGTGTTG 45 0.0042939675 31.111109 45 CCACAGT 45 0.0042939675 31.111109 70 >>END_MODULE