##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779740_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 56029 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.543093755019722 33.0 23.0 34.0 12.0 34.0 2 27.364900319477414 32.0 23.0 34.0 12.0 34.0 3 26.262078566456655 32.0 21.0 34.0 11.0 34.0 4 28.642363775901764 33.0 23.0 34.0 12.0 34.0 5 28.112334683824447 33.0 23.0 34.0 11.0 34.0 6 30.441914008816862 36.0 26.0 38.0 11.0 38.0 7 31.248014421103356 36.0 27.0 38.0 12.0 38.0 8 30.665744525156615 36.0 26.0 38.0 11.0 38.0 9 32.19937889307323 37.0 31.0 38.0 12.0 38.0 10-11 31.893644362740723 37.0 29.5 38.0 11.0 38.0 12-13 30.791500829927358 35.5 26.5 38.0 11.0 38.0 14-15 30.962697888593407 35.5 26.5 38.0 11.0 38.0 16-17 30.543093755019722 35.5 26.5 38.0 11.0 38.0 18-19 31.07344410930054 36.0 26.5 38.0 11.5 38.0 20-21 30.00454229059951 35.0 24.0 37.5 11.0 38.0 22-23 29.972478537900017 35.5 24.5 37.5 11.0 38.0 24-25 31.276071320209176 36.0 27.0 38.0 11.0 38.0 26-27 29.836888040122076 35.0 24.0 38.0 11.0 38.0 28-29 32.094424315979225 37.0 31.0 38.0 11.0 38.0 30-31 32.645112352531726 37.0 31.5 38.0 11.0 38.0 32-33 32.73204947437934 37.0 32.0 38.0 11.0 38.0 34-35 32.8018436880901 37.0 33.0 38.0 11.0 38.0 36-37 30.496028842206712 35.5 25.0 38.0 11.0 38.0 38-39 28.57803101965054 34.0 21.0 37.0 11.0 38.0 40-41 29.84424137500223 34.0 24.5 37.0 11.0 38.0 42-43 31.092184404504806 36.0 27.5 37.5 11.0 38.0 44-45 32.88969997679773 37.0 33.0 38.0 16.0 38.0 46-47 31.365846258187723 36.0 28.5 38.0 16.0 38.0 48-49 30.709561120134218 35.5 27.0 38.0 11.0 38.0 50-51 28.286128611968802 34.0 21.0 37.5 11.0 38.0 52-53 31.875546591943454 36.5 29.0 38.0 11.0 38.0 54-55 30.989442967034925 36.0 27.0 38.0 11.0 38.0 56-57 31.438005318674257 36.5 28.0 38.0 11.0 38.0 58-59 32.66423637759018 37.0 32.0 38.0 11.0 38.0 60-61 33.190856520730335 37.0 34.0 38.0 20.0 38.0 62-63 33.09031929893448 37.0 34.0 38.0 16.0 38.0 64-65 32.791099252172984 37.5 32.5 38.0 16.0 38.0 66-67 30.419729068875046 36.0 24.5 38.0 11.0 38.0 68-69 30.470934694533188 35.5 25.0 38.0 11.0 38.0 70-71 30.01648253582966 35.0 24.0 38.0 11.0 38.0 72-73 28.777213585821627 34.0 22.0 37.0 11.0 38.0 74-75 31.132877616948367 35.5 28.0 37.5 11.0 38.0 76 31.603151939174356 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 2.0 12 11.0 13 69.0 14 198.0 15 334.0 16 526.0 17 854.0 18 1134.0 19 1327.0 20 1233.0 21 1151.0 22 1030.0 23 1035.0 24 1148.0 25 1254.0 26 1386.0 27 1594.0 28 1851.0 29 2147.0 30 2619.0 31 3222.0 32 3993.0 33 4960.0 34 6274.0 35 7198.0 36 6725.0 37 2753.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.46734726659408 20.751753556194114 13.739313569758519 30.041585607453282 2 17.221438897713686 18.26197147905549 43.79339270734798 20.723196915882845 3 18.10490995734352 20.243088400649665 39.36711345910154 22.284888182905284 4 13.632226168591266 20.264505880883114 34.737368148637316 31.365899801888308 5 13.194952613824984 30.528833282764285 40.15420585768084 16.12200824572989 6 25.49572542790341 35.69936996912313 17.47487908047618 21.33002552249728 7 23.612771957379213 27.55358832033411 23.200485462885293 25.63315425940138 8 20.25951310059256 34.81830513314772 20.37909616620261 24.54308560005711 9 22.056828728492896 16.425715713571787 22.97065752837867 38.54679802955665 10-11 23.3775969158278 25.43906618119512 28.408117369886487 22.7752195330906 12-13 22.30224173627472 21.162632969229673 31.31291497108589 25.222210323409723 14-15 23.232133933033484 24.727814664096524 24.702827157849647 27.337224245020348 16-17 24.652852145355894 24.609124009423862 26.574212893553224 24.163810951667024 18-19 20.910973084886127 24.582351681302207 29.38530734632684 25.12136788748483 20-21 24.6216177625473 23.675662168915544 27.685264510601844 24.017455557935318 22-23 24.841150853144857 23.58552866423931 27.246198329406724 24.32712215320911 24-25 21.482625069160612 26.237305680986633 25.56443984365239 26.715629406200357 26-27 23.35082458770615 25.082101806239738 27.786999357464126 23.78007424858999 28-29 22.052366673805953 26.636681659170414 26.78303705290212 24.52791461412151 30-31 21.842650103519667 26.186906546726636 27.4568073106304 24.513636039123295 32-33 22.24423502534447 25.85046762333119 27.45145284500607 24.45384450631827 34-35 21.7551938316556 25.65770686085529 27.59959306061255 24.987506246876563 36-37 23.802384522024703 24.053151995430856 30.20632540872421 21.93813807382023 38-39 23.616763047047904 22.35935603626758 33.87324195045334 20.15063896623117 40-41 22.21210823159849 25.539908617120012 26.1895837795388 26.058399371742702 42-43 20.402298850574713 26.239558792032557 27.09448847005069 26.26365388734204 44-45 20.978796316127653 25.002677232812164 28.68565717141429 25.33286927964589 46-47 23.697080031412867 24.19593774541301 28.945348754194335 23.161633468979794 48-49 23.620332690797458 24.218248018847717 29.46383950881702 22.6975797815378 50-51 26.427857499821517 22.179089026915115 30.49368173056329 20.89937174270008 52-53 20.895802098950526 25.662168915542228 28.858784893267654 24.583244092239596 54-55 23.259798672092526 24.449382451631326 27.96191190119226 24.328906975083886 56-57 23.15181694866852 24.518990504747627 27.886949382451633 24.44224316413222 58-59 20.64968096024274 25.8569452501004 28.60916514211771 24.884208647539154 60-61 20.5656100521168 25.144570571856928 28.38223745270222 25.907581923324052 62-63 20.556685942742913 26.14228599985721 28.126115513671735 25.174912543728134 64-65 20.51295780681088 26.587599057614046 27.904797601199398 24.99464553437567 66-67 18.96105518669237 27.067716141929036 24.784036553151996 29.1871921182266 68-69 19.317005248313045 27.62951194258988 25.270448784319328 27.78303402477775 70-71 19.199328906975083 27.136431784107945 24.78939101877633 28.87484829014064 72-73 18.354215749268224 26.971335760691083 24.236988648532876 30.43745984150782 74-75 20.609338188048834 26.77232812165346 25.912043978010995 26.70628971228671 76 21.12872135360891 25.710359106161206 26.6224030841722 26.538516456057685 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 3.0 14 7.0 15 15.0 16 23.0 17 25.0 18 29.0 19 58.0 20 94.5 21 106.0 22 147.5 23 217.0 24 307.5 25 370.0 26 424.5 27 555.5 28 710.5 29 789.0 30 869.5 31 1039.0 32 1265.5 33 1403.0 34 1517.0 35 1704.5 36 1915.0 37 2052.0 38 2164.0 39 2327.5 40 2465.5 41 2625.0 42 2698.0 43 2645.5 44 2650.5 45 2686.5 46 2665.0 47 2636.0 48 2493.0 49 2322.5 50 2266.0 51 2164.5 52 1970.5 53 1773.5 54 1669.0 55 1588.5 56 1443.5 57 1311.5 58 1244.0 59 1154.5 60 990.5 61 872.5 62 829.0 63 809.0 64 759.0 65 694.5 66 645.5 67 631.0 68 614.0 69 582.5 70 533.0 71 498.0 72 473.0 73 410.0 74 347.0 75 322.0 76 276.5 77 212.0 78 161.5 79 130.0 80 118.5 81 78.0 82 44.5 83 40.0 84 35.5 85 22.5 86 10.0 87 6.0 88 4.5 89 2.5 90 2.5 91 1.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.001784790019454211 9 0.001784790019454211 10-11 0.001784790019454211 12-13 0.001784790019454211 14-15 0.001784790019454211 16-17 0.001784790019454211 18-19 0.001784790019454211 20-21 0.001784790019454211 22-23 0.001784790019454211 24-25 0.0 26-27 0.001784790019454211 28-29 0.001784790019454211 30-31 0.001784790019454211 32-33 0.001784790019454211 34-35 0.001784790019454211 36-37 0.001784790019454211 38-39 0.001784790019454211 40-41 0.001784790019454211 42-43 0.001784790019454211 44-45 0.001784790019454211 46-47 0.001784790019454211 48-49 0.001784790019454211 50-51 0.001784790019454211 52-53 0.001784790019454211 54-55 0.001784790019454211 56-57 0.001784790019454211 58-59 0.0026771850291813165 60-61 0.001784790019454211 62-63 0.001784790019454211 64-65 0.001784790019454211 66-67 0.001784790019454211 68-69 0.019632690213996325 70-71 0.001784790019454211 72-73 0.001784790019454211 74-75 0.001784790019454211 76 0.001784790019454211 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 56029.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 98.79883631690731 #Duplication Level Percentage of deduplicated Percentage of total 1 98.87817038803381 97.69048171482625 2 1.0369246332827515 2.0489389423334345 3 0.07587253414264036 0.22488354245123063 4 0.009032444540790519 0.03569580038908422 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0017847900194542113 0.0 9 0.0 0.0 0.0 0.005354370058362634 0.0 10 0.0 0.0 0.0 0.007139160077816845 0.0 11 0.0 0.0 0.0 0.007139160077816845 0.0 12 0.0 0.0 0.0 0.007139160077816845 0.0 13 0.0 0.0 0.0 0.007139160077816845 0.0 14 0.0 0.0 0.0 0.010708740116725268 0.0 15 0.0 0.0 0.0 0.010708740116725268 0.0 16 0.0 0.0 0.0 0.010708740116725268 0.0 17 0.0 0.0 0.0 0.010708740116725268 0.0 18 0.0 0.0 0.0 0.010708740116725268 0.0 19 0.0 0.0 0.0 0.01427832015563369 0.0 20 0.0 0.0 0.0 0.01427832015563369 0.0 21 0.0 0.0 0.0 0.01427832015563369 0.0 22 0.0 0.0 0.0 0.024987060272358957 0.0 23 0.0 0.0 0.0 0.024987060272358957 0.0 24 0.0 0.0 0.0 0.03569580038908422 0.0 25 0.0 0.0 0.0 0.03569580038908422 0.0 26 0.0 0.0 0.0 0.03748059040853843 0.0 27 0.0 0.0 0.0 0.04283496046690107 0.0 28 0.0 0.0 0.0 0.04461975048635528 0.0 29 0.0 0.0 0.0 0.051758910564172124 0.0 30 0.0 0.0 0.0 0.062467650680897394 0.0 31 0.0 0.0 0.0 0.0642524407003516 0.0 32 0.0 0.0 0.0 0.07496118081707687 0.0 33 0.0 0.0 0.0 0.08745471095325635 0.0 34 0.0 0.0 0.0 0.0963786610505274 0.0 35 0.0 0.0 0.0 0.14813757161469954 0.0 36 0.0 0.0 0.0 0.16420068178978744 0.0 37 0.0 0.0 0.0 0.2409466526263185 0.0 38 0.0 0.0 0.0 0.28913598315158223 0.0 39 0.0 0.0 0.0 0.3408948937157543 0.0 40 0.0 0.0 0.0 0.4247800246301023 0.0 41 0.0 0.0 0.0 0.5300826357779007 0.0 42 0.0 0.0 0.0 0.6407396169840618 0.0 43 0.0 0.0 0.0 0.794231558657124 0.0 44 0.0 0.0 0.0 0.9512930803690945 0.0 45 0.0 0.0 0.0 1.0744435917114352 0.0 46 0.0 0.0 0.0 1.2261507433650431 0.0 47 0.0 0.0 0.0 1.3493012547073837 0.0 48 0.0 0.0 0.0 1.4349711756411858 0.0 49 0.0 0.0 0.0 1.5509825269057096 0.0 50 0.0 0.0 0.0 1.7026896785593175 0.0 51 0.0 0.0 0.0 1.927573221010548 0.0 52 0.0 0.0 0.0 2.122115333131057 0.0 53 0.0 0.0 0.0 2.384479465990826 0.0 54 0.0 0.0 0.0 2.627210908636599 0.0 55 0.0 0.0 0.0 2.8485248710489213 0.0 56 0.0 0.0 0.0 3.100180263791965 0.0 57 0.0 0.0 0.0 3.260811365542844 0.0 58 0.0 0.0 0.0 3.412518517196452 0.0 59 0.0 0.0 0.0 3.574934408966785 0.0 60 0.0 0.0 0.0 3.6713130700173124 0.0 61 0.0 0.0 0.0 3.80160274143747 0.0 62 0.0 0.0 0.0 3.905120562565814 0.0 63 0.0 0.0 0.0 4.053258134180513 0.0 64 0.0 0.0 0.0 4.1853325956201255 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCAAGTA 15 0.0022067805 70.056305 67 CGTATCA 15 0.0022146225 69.99376 56 CGCCGTA 15 0.0022146225 69.99376 53 TCCTTAG 15 0.0022146225 69.99376 38 GCCGTAT 15 0.0022146225 69.99376 54 CGTGTAG 20 7.866522E-5 69.99375 35 GTAGCTC 30 8.281275E-6 58.32813 38 TCTCGGT 50 9.549694E-10 55.995 43 CTCTCGG 25 2.3724277E-4 55.995 42 TCGGTGG 25 2.3724277E-4 55.995 45 ACGATAC 20 0.0068957345 52.54223 68 TTGTCGC 20 0.0069201686 52.495316 49 AGACGTC 20 0.0069201686 52.495316 53 TATCTCG 20 0.0069201686 52.495316 41 GTAGATC 20 0.0069201686 52.495316 38 CCTACGG 30 5.833926E-4 46.662502 26 TACGGTG 30 5.833926E-4 46.662502 28 GCTCTCG 30 5.833926E-4 46.662502 41 ACCTACG 30 5.833926E-4 46.662502 25 CTCGGTT 30 5.833926E-4 46.662502 44 >>END_MODULE