##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779739_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 23699 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.967087218869995 23.0 12.0 32.0 12.0 34.0 2 23.629478037047978 23.0 12.0 32.0 12.0 34.0 3 23.304865184184987 23.0 11.0 32.0 11.0 34.0 4 22.89476349213047 23.0 12.0 32.0 11.0 34.0 5 23.47710873876535 23.0 11.0 33.0 11.0 34.0 6 24.165239039621923 26.0 12.0 34.0 11.0 38.0 7 25.023081142664246 27.0 12.0 36.0 12.0 38.0 8 24.383560487784294 26.0 11.0 35.0 11.0 38.0 9 25.922190809738808 27.0 12.0 37.0 12.0 38.0 10-11 24.901641419469176 26.0 11.0 36.0 11.0 38.0 12-13 25.42318241276003 27.0 11.0 35.5 11.0 38.0 14-15 24.13422507278788 26.0 11.0 34.5 11.0 38.0 16-17 24.34457150090721 26.0 11.0 35.0 11.0 38.0 18-19 24.750854466433182 26.0 11.5 34.5 11.0 38.0 20-21 23.858896999873412 24.5 11.0 34.0 11.0 37.5 22-23 24.172412338073336 24.5 11.0 35.0 11.0 37.5 24-25 24.056584666019663 25.0 11.0 35.0 11.0 38.0 26-27 23.319633739820247 23.0 11.0 34.0 10.0 38.0 28-29 24.019663276931517 25.0 11.0 35.5 11.0 38.0 30-31 24.433836870754043 26.0 11.0 36.5 11.0 38.0 32-33 24.581817798219333 26.0 11.0 37.0 11.0 38.0 34-35 24.65694755052956 26.0 11.0 37.0 11.0 38.0 36-37 24.06675387147137 25.0 11.0 34.0 11.0 38.0 38-39 23.941200050635047 24.5 11.0 34.0 11.0 37.0 40-41 23.225178277564453 23.5 11.0 34.0 11.0 37.0 42-43 23.71000886113338 25.5 11.0 34.0 11.0 38.0 44-45 24.638951010591164 26.0 11.0 36.5 11.0 38.0 46-47 24.21038862399257 25.0 11.0 35.5 11.0 38.0 48-49 23.338664078653107 23.5 11.0 34.0 11.0 38.0 50-51 22.640702139330774 23.0 11.0 33.0 11.0 37.0 52-53 23.44309886493101 24.0 11.0 35.0 11.0 37.5 54-55 23.310456137389764 23.5 11.0 34.0 11.0 38.0 56-57 23.705472804759694 24.0 11.0 35.0 11.0 38.0 58-59 23.925819654837756 24.5 11.0 36.0 11.0 38.0 60-61 24.525887168234945 25.5 11.0 37.0 11.0 38.0 62-63 24.537723110679778 25.5 11.0 37.0 11.0 38.0 64-65 24.374214101860836 25.5 11.0 36.5 11.0 38.0 66-67 23.82811511034221 24.5 11.0 34.0 11.0 38.0 68-69 23.48472509388582 24.0 11.0 34.0 11.0 38.0 70-71 23.268597831132116 24.0 11.0 34.0 11.0 38.0 72-73 23.056500274273176 24.0 11.0 34.0 11.0 37.0 74-75 23.048968310899195 23.0 11.0 34.0 11.0 37.5 76 22.622178150976833 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 4 1.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 3.0 12 28.0 13 149.0 14 445.0 15 754.0 16 1196.0 17 1878.0 18 2396.0 19 2498.0 20 2114.0 21 1614.0 22 1186.0 23 767.0 24 565.0 25 410.0 26 400.0 27 364.0 28 395.0 29 421.0 30 450.0 31 557.0 32 628.0 33 761.0 34 984.0 35 1184.0 36 1075.0 37 476.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.460989915186293 15.042828811342252 14.211570108443395 45.28461116502806 2 13.582851597113802 11.65450018988143 52.25958901219461 22.50305920081016 3 15.650449386050044 11.14393012363391 49.81644795139035 23.389172538925692 4 13.35077429427402 23.2836828558167 26.612937254736487 36.752605595172795 5 13.131355753407318 17.92480695387991 47.55474914553356 21.389088147179205 6 21.152791257015064 35.57112114435208 15.57871640153593 27.697371197096928 7 19.439638803325035 19.802523313219965 18.47335330604667 42.284484577408335 8 16.271415309308804 33.73280445607224 15.967592201873575 34.028188032745376 9 16.803105747320448 14.866233437420878 16.959237066419107 51.37142374883956 10-11 19.03747151658368 21.147354207106083 28.74715165836779 31.068022617942443 12-13 17.16564339515159 14.070510791822265 35.1288056206089 33.63504019241724 14-15 24.423486718568686 20.581471401143535 22.104774563790958 32.890267316496825 16-17 30.669254789433708 14.8493543758967 21.28449658199004 33.19689425267955 18-19 18.746307705291585 14.00751118237826 31.16296733901595 36.083213773314206 20-21 30.108025993754744 14.100346020761245 22.48501983289729 33.30660815258671 22-23 32.291754578445435 12.536922947084141 21.225419866655415 33.945902607815 24-25 20.287775855521332 21.682349466222202 19.11262078568716 38.917253892569306 26-27 28.726052831462574 21.261287872394295 21.57988015866318 28.432779137479958 28-29 22.50986349347005 19.925311728590415 23.106947697111632 34.4578770808279 30-31 20.79922356316989 19.666216558359356 25.519031141868513 34.01552873660225 32-33 22.767744113427295 18.265254451852478 25.293273693982616 33.67372774073761 34-35 21.567220862520045 19.611359608405774 24.801671027090894 34.01974850198329 36-37 29.517258840408473 13.123470335049372 31.200945227445352 26.1583255970968 38-39 29.266182800236308 10.6591273525192 37.13393535319437 22.940754494050132 40-41 24.170816102624695 22.839480124905055 22.850029538357667 30.139674234112583 42-43 16.644513365824842 23.860159925733697 27.489081587442243 32.006245120999225 44-45 17.48844863598962 15.334303858894021 32.93246408000506 34.244783425111294 46-47 28.57142857142857 14.114817393505918 25.77167331265692 31.54208072240859 48-49 27.832985210034387 14.836382049496805 29.80568390404456 27.524948836424244 50-51 40.914845134610516 12.408220102962275 23.62224660308887 23.05468815933834 52-53 16.990885306776942 18.132331842349565 30.416068866571017 34.46071398430247 54-55 27.352519199932484 15.315638450502153 24.72149548485104 32.61034686471432 56-57 26.843471105766188 16.211996539865392 23.282064265670822 33.662468088697594 58-59 17.929783104059414 19.70630432947928 28.896953329394886 33.46695923706642 60-61 17.328466537260528 16.976116127943286 28.643767406532195 37.05164992826399 62-63 17.292598531521648 20.149379694488985 27.945396235969277 34.61262553802008 64-65 17.298928179593215 22.092581652460122 26.844037471516586 33.764452696430084 66-67 15.229133260190734 32.61034686471432 18.256814921090385 33.90370495400456 68-69 15.887219314536551 31.377680229613368 18.204457200742866 34.53064325510721 70-71 15.929614313444173 32.903620558696936 16.786226685796272 34.38053844206262 72-73 14.47168537429319 36.78791459194869 15.640560384842603 33.09983964891552 74-75 16.957127183728584 24.9810110557853 19.860325765887417 38.2015359945987 76 18.048698147444824 21.551251213233744 23.04089125205722 37.359159387264214 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.5 17 1.0 18 1.0 19 1.0 20 2.5 21 4.0 22 3.5 23 6.5 24 11.5 25 13.0 26 17.0 27 27.5 28 46.0 29 58.0 30 75.5 31 109.5 32 138.5 33 151.0 34 198.5 35 266.0 36 323.5 37 361.0 38 401.5 39 505.0 40 597.0 41 681.5 42 737.0 43 811.0 44 910.5 45 953.0 46 970.0 47 990.5 48 1013.5 49 1009.0 50 1002.0 51 987.5 52 962.0 53 915.0 54 879.0 55 852.0 56 843.5 57 819.0 58 776.0 59 763.0 60 746.0 61 742.5 62 743.0 63 736.0 64 701.0 65 680.5 66 675.5 67 663.0 68 666.5 69 638.0 70 587.5 71 569.0 72 505.0 73 413.5 74 348.0 75 310.0 76 293.0 77 233.5 78 173.0 79 155.0 80 126.0 81 79.0 82 50.5 83 40.0 84 32.0 85 17.0 86 7.5 87 5.0 88 2.5 89 0.5 90 0.5 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0042195873243596775 9 0.0042195873243596775 10-11 0.0042195873243596775 12-13 0.0021097936621798387 14-15 0.0021097936621798387 16-17 0.0042195873243596775 18-19 0.0042195873243596775 20-21 0.0042195873243596775 22-23 0.0042195873243596775 24-25 0.0 26-27 0.0042195873243596775 28-29 0.0021097936621798387 30-31 0.0042195873243596775 32-33 0.0042195873243596775 34-35 0.0042195873243596775 36-37 0.0042195873243596775 38-39 0.0042195873243596775 40-41 0.0042195873243596775 42-43 0.0021097936621798387 44-45 0.0021097936621798387 46-47 0.0021097936621798387 48-49 0.0021097936621798387 50-51 0.0042195873243596775 52-53 0.0042195873243596775 54-55 0.0042195873243596775 56-57 0.0021097936621798387 58-59 0.0042195873243596775 60-61 0.0042195873243596775 62-63 0.0042195873243596775 64-65 0.0042195873243596775 66-67 0.0042195873243596775 68-69 0.029537111270517745 70-71 0.0042195873243596775 72-73 0.0042195873243596775 74-75 0.0042195873243596775 76 0.008439174648719355 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 23699.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.68775053799739 #Duplication Level Percentage of deduplicated Percentage of total 1 99.6952380952381 99.38394025064349 2 0.2962962962962963 0.5907422254103549 3 0.008465608465608466 0.025317523946158067 4 0.0 0.0 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0042195873243596775 0.0 5 0.0 0.0 0.0 0.012658761973079033 0.0 6 0.0 0.0 0.0 0.012658761973079033 0.0 7 0.0 0.0 0.0 0.01687834929743871 0.0 8 0.0 0.0 0.0 0.01687834929743871 0.0 9 0.0 0.0 0.0 0.029537111270517745 0.0 10 0.0 0.0 0.0 0.042195873243596776 0.0 11 0.0 0.0 0.0 0.042195873243596776 0.0 12 0.0 0.0 0.0 0.04641546056795645 0.0 13 0.0 0.0 0.0 0.04641546056795645 0.0 14 0.0 0.0 0.0 0.05485463521667581 0.0 15 0.0 0.0 0.0 0.05485463521667581 0.0 16 0.0 0.0 0.0 0.05485463521667581 0.0 17 0.0 0.0 0.0 0.05907422254103549 0.0 18 0.0 0.0 0.0 0.05907422254103549 0.0 19 0.0 0.0 0.0 0.06751339718975484 0.0 20 0.0 0.0 0.0 0.06751339718975484 0.0 21 0.0 0.0 0.0 0.06751339718975484 0.0 22 0.0 0.0 0.0 0.10548968310899194 0.0 23 0.0 0.0 0.0 0.10970927043335162 0.0 24 0.0 0.0 0.0 0.12236803240643065 0.0 25 0.0 0.0 0.0 0.12236803240643065 0.0 26 0.0 0.0 0.0 0.13502679437950968 0.0 27 0.0 0.0 0.0 0.16034431832566776 0.0 28 0.0 0.0 0.0 0.1856618422718258 0.0 29 0.0 0.0 0.0 0.21941854086670323 0.0 30 0.0 0.0 0.0 0.24051647748850163 0.0 31 0.0 0.0 0.0 0.24895565213722098 0.0 32 0.0 0.0 0.0 0.2827123507320984 0.0 33 0.0 0.0 0.0 0.3206886366513355 0.0 34 0.0 0.0 0.0 0.3755432718680113 0.0 35 0.0 0.0 0.0 0.4683741930039242 0.0 36 0.0 0.0 0.0 0.5485463521667581 0.0 37 0.0 0.0 0.0 0.7299886071142242 0.0 38 0.0 0.0 0.0 0.8776741634668129 0.0 39 0.0 0.0 0.0 1.0759947677117179 0.0 40 0.0 0.0 0.0 1.2996328959027807 0.0 41 0.0 0.0 0.0 1.4895143254989662 0.0 42 0.0 0.0 0.0 1.6540782311489937 0.0 43 0.0 0.0 0.0 1.9325709945567324 0.0 44 0.0 0.0 0.0 2.1013544875311196 0.0 45 0.0 0.0 0.0 2.206844170640111 0.0 46 0.0 0.0 0.0 2.367188488965779 0.0 47 0.0 0.0 0.0 2.569728680535044 0.0 48 0.0 0.0 0.0 2.721633824211992 0.0 49 0.0 0.0 0.0 2.8060255706991857 0.0 50 0.0 0.0 0.0 2.9663698890248535 0.0 51 0.0 0.0 0.0 3.1478121439723195 0.0 52 0.0 0.0 0.0 3.3165956369467064 0.0 53 0.0 0.0 0.0 3.5275750031646904 0.0 54 0.0 0.0 0.0 3.7469935440313935 0.0 55 0.0 0.0 0.0 3.911557449681421 0.0 56 0.0 0.0 0.0 4.0508038313852905 0.0 57 0.0 0.0 0.0 4.19005021308916 0.0 58 0.0 0.0 0.0 4.2828811342250726 0.0 59 0.0 0.0 0.0 4.413688341280222 0.0 60 0.0 0.0 0.0 4.4938605004430565 0.0 61 0.0 0.0 0.0 4.624667707498206 0.0 62 0.0 0.0 0.0 4.683741930039242 0.0 63 0.0 0.0 0.0 4.776572851175155 0.0 64 0.0 0.0 0.0 4.84830583568927 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGTGG 55 0.0 70.00001 45 CGGTGTT 25 2.7558508E-6 70.00001 46 CGGTGGT 50 0.0 70.00001 46 GGTGTTC 25 2.7558508E-6 70.00001 47 ATCCCCA 15 0.0021979848 70.0 4 GTGTCTA 15 0.0021979848 70.0 36 GGCAACC 15 0.0021979848 70.0 28 TATGTAT 15 0.0021979848 70.0 27 TGTCACT 15 0.0021979848 70.0 53 CCCACGA 15 0.0021979848 70.0 21 ATTACGT 15 0.0021979848 70.0 12 AACTTAT 15 0.0021979848 70.0 56 TTCCTAC 15 0.0021979848 70.0 19 ACTTATT 20 7.769413E-5 70.0 57 AGTGTAG 35 3.5088306E-9 70.0 35 CGGCTGT 15 0.0021979848 70.0 31 GACTCTG 15 0.0021979848 70.0 14 GTTATAC 15 0.0021979848 70.0 1 CTTCCGA 30 9.8156306E-8 70.0 18 TTACGCT 35 3.5088306E-9 70.0 13 >>END_MODULE