FastQCFastQC Report
Wed 25 May 2016
SRR1779737_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779737_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62692
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCATGTG150.002215772669.99441532
CTTGGTT150.002215772669.99441528
GTAGATT207.8734556E-569.99441538
ACGTGTA150.002215772669.99441534
CGTACCA150.002215772669.99441556
CGTGTAT207.8734556E-569.99441535
GCGTGTA150.002215772669.99441534
TTTGAGC150.002215772669.99441526
CGACTTG150.002215772669.99441525
TCGCGTA207.8734556E-569.99441534
ACGACTT252.8110753E-669.99441524
TCATTAA453.765308E-1062.2172660
ACGCTTC453.765308E-1062.2172615
CTCTCGG401.0461008E-861.24511342
GACGACT352.9320654E-759.99521323
TCGCTGG308.292283E-658.32868245
CACGTGT308.292283E-658.32868233
TGTGTAG308.292283E-658.32868235
AAGTGTA308.292283E-658.32868234
GCCGTAT601.8189894E-1258.32868254
Produced by FastQC (version 0.11.5)