##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779736_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 163024 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.400198743743253 34.0 32.0 34.0 21.0 34.0 2 28.591557071351456 34.0 23.0 34.0 12.0 34.0 3 27.42823756011385 33.0 23.0 34.0 11.0 34.0 4 30.09596746491314 34.0 31.0 34.0 21.0 34.0 5 29.621712140543725 34.0 31.0 34.0 11.0 34.0 6 32.20091520266955 37.0 31.0 38.0 12.0 38.0 7 33.23596525664933 37.0 34.0 38.0 21.0 38.0 8 32.459938413975856 37.0 31.0 38.0 12.0 38.0 9 33.85921704779664 37.0 34.0 38.0 21.0 38.0 10-11 33.67977414368437 38.0 34.0 38.0 21.0 38.0 12-13 32.50551145843557 37.5 30.0 38.0 17.0 38.0 14-15 32.68899671214054 37.0 32.5 38.0 16.0 38.0 16-17 32.317048410050056 37.0 30.0 38.0 16.5 38.0 18-19 32.93810727254883 37.0 32.5 38.0 16.0 38.0 20-21 31.74298569535774 36.5 29.0 38.0 16.0 38.0 22-23 31.715796447148886 36.5 28.5 38.0 16.0 38.0 24-25 33.08853911080577 37.0 32.5 38.0 21.0 38.0 26-27 31.557022278928255 37.0 28.5 38.0 11.0 38.0 28-29 33.84025971636078 37.5 34.0 38.0 22.0 38.0 30-31 34.28964446952595 38.0 35.5 38.0 23.0 38.0 32-33 34.37049759544607 38.0 36.0 38.0 23.0 38.0 34-35 34.426602831484935 38.0 36.0 38.0 23.5 38.0 36-37 32.141865614878796 37.0 30.0 38.0 16.0 38.0 38-39 30.20771174796349 35.0 24.5 38.0 11.0 38.0 40-41 31.648959662381 36.5 29.0 38.0 11.0 38.0 42-43 32.753757115516734 37.0 30.5 38.0 17.0 38.0 44-45 34.47788055746393 38.0 35.5 38.0 24.5 38.0 46-47 32.91999644224163 37.5 31.0 38.0 18.0 38.0 48-49 32.36637243596035 37.0 30.0 38.0 17.0 38.0 50-51 29.987066321523212 35.0 23.5 38.0 11.0 38.0 52-53 33.68384102954166 37.0 34.0 38.0 22.0 38.0 54-55 32.64854561291589 37.0 30.5 38.0 17.0 38.0 56-57 33.09683236824026 37.5 31.5 38.0 17.5 38.0 58-59 34.283430660516245 38.0 35.0 38.0 23.5 38.0 60-61 34.721372313279026 38.0 36.0 38.0 25.0 38.0 62-63 34.61521003042496 38.0 36.0 38.0 24.5 38.0 64-65 34.30659289429777 38.0 35.0 38.0 23.0 38.0 66-67 32.03097396702326 37.0 29.0 38.0 11.0 38.0 68-69 32.18240259102954 37.0 29.5 38.0 11.0 38.0 70-71 31.68653388458141 37.0 28.0 38.0 11.0 38.0 72-73 30.380572799097067 35.5 24.5 38.0 11.0 38.0 74-75 32.813229953871826 37.0 31.5 38.0 17.0 38.0 76 33.27844366473648 37.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 4.0 12 25.0 13 149.0 14 411.0 15 732.0 16 1245.0 17 1874.0 18 2506.0 19 2595.0 20 2411.0 21 2026.0 22 1708.0 23 1584.0 24 1743.0 25 1844.0 26 2272.0 27 2782.0 28 3491.0 29 4261.0 30 5604.0 31 7435.0 32 10156.0 33 13869.0 34 19356.0 35 25863.0 36 30121.0 37 16955.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 40.95593286878006 19.26648836981058 11.434512709785063 28.343066051624298 2 21.96425066247914 17.33732456570812 37.12091471194425 23.577510059868487 3 20.74418490529002 18.876975169300223 34.56055550103052 25.818284424379236 4 13.950706644420455 18.688045931887327 35.23836981058004 32.12287761311218 5 14.240234566689566 31.14940131514378 38.71025125134949 15.900112866817157 6 27.77443811954068 33.83857591520267 17.466139954853276 20.920846010403377 7 28.11119835116302 27.437064481303363 21.42629306114437 23.02544410638924 8 24.420630344370696 31.993841322030153 18.250910919998528 25.33461741360062 9 23.810283274650047 16.66523536700568 20.75425402706383 38.77022733128044 10-11 24.992485630685618 24.49899092754921 27.179933873550034 23.32858956821514 12-13 25.2505796763627 21.169228693059832 28.25845591392573 25.321735716651737 14-15 23.244715437180258 23.141355154519022 24.333218829360455 29.280710578940266 16-17 23.772543246227457 24.457428536375904 27.49723960250276 24.272788614893877 18-19 22.430614554611232 24.49017148150079 27.96151404271242 25.117699921175557 20-21 23.195335598876227 24.238139637594927 28.411196034890995 24.155328728637855 22-23 23.842867351852362 23.564989893971042 28.965197842002432 23.62694491217416 24-25 22.500506063561584 25.618164308103765 25.45929102028548 26.42203860804917 26-27 22.093337095606728 24.867195838598473 28.41579664094417 24.623670424850634 28-29 22.936168124547606 25.59317147378881 27.472672400044168 23.997988001619415 30-31 22.650149367259434 25.6289067052711 27.033020285730057 24.687923641739406 32-33 22.278963204239933 25.84137675091936 26.988771419720713 24.89088862512 34-35 23.126326508078666 25.274809534909398 27.37789991534885 24.220964041663088 36-37 23.347298814263194 23.72945816796609 30.096122585433775 22.82712043233694 38-39 23.040353820531774 22.785784609911023 32.774098963013856 21.399762606543348 40-41 23.041273950208716 23.55286605058873 26.657690290484936 26.74816970871762 42-43 21.485136975377557 24.01792396118315 27.332813976027776 27.164125087411517 44-45 21.315900049993406 23.98640670095662 29.21424474685854 25.48344850219143 46-47 22.49389652930279 22.732207922857036 30.358785930733273 24.415109617106896 48-49 22.383857343969968 23.511622700073303 30.348450971190914 23.756068984765815 50-51 22.654987225611343 22.23909116282208 32.7171569394221 22.38876467214447 52-53 20.45233574918492 24.242963308295582 29.711293978364683 25.593406964154813 54-55 21.075812318658333 24.15394335699082 29.522576845927823 25.247667478423025 56-57 21.02691661248175 24.370330384856032 29.126436922623938 25.476316080038274 58-59 19.964544553939202 24.915731974003428 29.062730989470715 26.056992482586654 60-61 19.804871166509734 24.35184532006711 29.241107713447086 26.602175799976074 62-63 19.77720661755234 24.811527349237213 28.437747284092236 26.973518749118213 64-65 20.56838954251573 24.861981818404878 27.490154703046215 27.07947393603317 66-67 19.62955351967096 23.60392468385684 25.00222366035965 31.76429813611255 68-69 20.041352737624855 24.297801065109088 24.92177338208948 30.739072815176577 70-71 20.483557333104326 23.573036602646287 24.637316664724178 31.306089399525217 72-73 20.06698502958199 23.233131826170165 23.154614575378094 33.54526856886975 74-75 21.358839171520323 24.881380676781898 24.430826608760196 29.328953542937587 76 22.029063740254323 23.888333404898756 24.964881825040948 29.117721029805978 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 1.0 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.5 16 3.0 17 5.0 18 7.0 19 12.5 20 26.0 21 36.0 22 53.5 23 82.0 24 132.0 25 171.0 26 221.5 27 341.0 28 512.0 29 614.0 30 753.5 31 1082.5 32 1536.0 33 1800.0 34 2221.5 35 3089.0 36 4040.5 37 4546.0 38 5217.5 39 6592.0 40 7951.5 41 9098.5 42 9589.0 43 9886.0 44 10469.0 45 10980.5 46 11206.0 47 11009.5 48 10452.5 49 9609.5 50 9127.0 51 8551.5 52 7353.5 53 6120.5 54 5510.0 55 5058.0 56 4062.5 57 3249.5 58 2980.0 59 2679.0 60 2210.0 61 1940.5 62 1839.0 63 1758.5 64 1640.5 65 1553.5 66 1510.5 67 1517.0 68 1459.5 69 1384.0 70 1285.5 71 1205.0 72 1168.5 73 1071.0 74 920.5 75 831.0 76 744.0 77 573.5 78 433.5 79 377.0 80 326.5 81 221.5 82 144.5 83 122.0 84 97.5 85 53.5 86 30.0 87 26.0 88 18.5 89 7.0 90 2.0 91 1.5 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 1.5 98 3.5 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.001226813229953872 9 0.001226813229953872 10-11 0.0018402198449308078 12-13 0.001226813229953872 14-15 0.001226813229953872 16-17 0.002453626459907744 18-19 0.0021469231524192754 20-21 0.001226813229953872 22-23 0.00153351653744234 24-25 6.13406614976936E-4 26-27 0.001226813229953872 28-29 0.001226813229953872 30-31 0.0018402198449308078 32-33 0.00153351653744234 34-35 0.001226813229953872 36-37 0.0018402198449308078 38-39 0.0021469231524192754 40-41 0.0021469231524192754 42-43 0.001226813229953872 44-45 0.00153351653744234 46-47 0.001226813229953872 48-49 0.00153351653744234 50-51 0.00153351653744234 52-53 0.0021469231524192754 54-55 0.0018402198449308078 56-57 0.001226813229953872 58-59 0.00153351653744234 60-61 0.0021469231524192754 62-63 0.0018402198449308078 64-65 0.001226813229953872 66-67 0.0027603297673962114 68-69 0.02208263813916969 70-71 0.0018402198449308078 72-73 0.00153351653744234 74-75 0.00153351653744234 76 0.0018402198449308078 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 163024.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 87.5617640838312 #Duplication Level Percentage of deduplicated Percentage of total 1 92.29839264079479 80.81810081730096 2 4.951641070149851 8.671488544245415 3 1.3887877362551515 3.648141123734747 4 0.5815419235987427 2.03683346876042 5 0.295512653832521 1.293780463933504 6 0.15722576395170865 0.8260179150623788 7 0.08945803121500163 0.5483172117256386 8 0.08048081927860569 0.5637634008757381 9 0.04967280883996264 0.3914494892123448 >10 0.10728655208364982 1.20210756514884 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0018402198449308078 0.0 5 0.0 0.0 0.0 0.0018402198449308078 0.0 6 0.0 0.0 0.0 0.002453626459907744 0.0 7 0.0 0.0 0.0 0.0030670330748846794 0.0 8 0.0 0.0 0.0 0.0030670330748846794 0.0 9 0.0 0.0 0.0 0.0036804396898616155 0.0 10 0.0 0.0 0.0 0.004293846304838552 0.0 11 0.0 0.0 0.0 0.004293846304838552 0.0 12 0.0 0.0 0.0 0.004293846304838552 0.0 13 0.0 0.0 0.0 0.004293846304838552 0.0 14 0.0 0.0 0.0 0.006134066149769359 0.0 15 0.0 0.0 0.0 0.006747472764746295 0.0 16 0.0 0.0 0.0 0.006747472764746295 0.0 17 0.0 0.0 0.0 0.006747472764746295 0.0 18 0.0 0.0 0.0 0.007360879379723231 0.0 19 0.0 0.0 0.0 0.007974285994700167 0.0 20 0.0 0.0 0.0 0.00920109922465404 0.0 21 0.0 0.0 0.0 0.010427912454607911 0.0 22 0.0 0.0 0.0 0.019015605064285013 0.0 23 0.0 0.0 0.0 0.020242418294238885 0.0 24 0.0 0.0 0.0 0.02269604475414663 0.0 25 0.0 0.0 0.0 0.0239228579841005 0.0 26 0.0 0.0 0.0 0.026376484444008245 0.0 27 0.0 0.0 0.0 0.051526155658062615 0.0 28 0.0 0.0 0.0 0.07299538718225537 0.0 29 0.0 0.0 0.0 0.09017077240160958 0.0 30 0.0 0.0 0.0 0.10857297085091766 0.0 31 0.0 0.0 0.0 0.12268132299538718 0.0 32 0.0 0.0 0.0 0.14415055451957995 0.0 33 0.0 0.0 0.0 0.16807341250368044 0.0 34 0.0 0.0 0.0 0.20242418294238884 0.0 35 0.0 0.0 0.0 0.2631514378251055 0.0 36 0.0 0.0 0.0 0.3300127588575915 0.0 37 0.0 0.0 0.0 0.5766022180783198 0.0 38 0.0 0.0 0.0 0.842207282363333 0.0 39 0.0 0.0 0.0 1.1924624595151634 0.0 40 0.0 0.0 0.0 1.6482235744430267 0.0 41 0.0 0.0 0.0 2.250588870350378 0.0 42 0.0 0.0 0.0 2.9326970262047305 0.0 43 0.0 0.0 0.0 3.6405682598881146 0.0 44 0.0 0.0 0.0 4.30611443713809 0.0 45 0.0 0.0 0.0 4.7845715968201 0.0 46 0.0 0.0 0.0 5.38325645303759 0.0 47 0.0 0.0 0.0 6.03592109137305 0.0 48 0.0 0.0 0.0 6.537687702424183 0.0 49 0.0 0.0 0.0 6.982407498282462 0.0 50 0.0 0.0 0.0 7.7154284031799 0.0 51 0.0 0.0 0.0 8.52819216802434 0.0 52 0.0 0.0 0.0 9.272254391991364 0.0 53 0.0 0.0 0.0 10.246957503189714 0.0 54 0.0 0.0 0.0 11.108180390617333 0.0 55 0.0 0.0 0.0 11.663926783786437 0.0 56 0.0 0.0 0.0 12.234394935714986 0.0 57 0.0 0.0 0.0 12.671753852193541 0.0 58 0.0 0.0 0.0 13.119540681126706 0.0 59 0.0 0.0 0.0 13.656884875846501 0.0 60 0.0 0.0 0.0 14.007753459613308 0.0 61 0.0 0.0 0.0 14.369663362449701 0.0 62 0.0 0.0 0.0 14.645696339189321 0.0 63 0.0 0.0 0.0 15.029688880164883 0.0 64 0.0 0.0 0.0 15.436377465894592 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTTT 30 8.348006E-6 58.333332 44 TCCGAAC 20 0.0069413926 52.5 3 TGTGGAC 20 0.0069413926 52.5 37 ACTTCGT 20 0.0069413926 52.5 33 AGCGCAT 20 0.0069413926 52.5 10 CAGTGTA 20 0.0069413926 52.5 34 AGATCTC 75 0.0 51.333332 40 AACGCTG 35 2.0795253E-5 50.0 14 CGTATCA 75 1.4551915E-11 46.666668 56 CTGTGTA 45 1.6768372E-6 46.666668 34 TTCCGCT 55 1.3033423E-7 44.545452 13 GTCGCCG 90 1.8189894E-12 42.77778 51 TCGCCGT 95 3.6379788E-12 40.526318 52 ACCTGAT 35 0.0012526017 40.0 25 TGCCTAC 70 1.9108484E-8 40.0 19 GAACCGA 35 0.0012526017 40.0 33 GATCTCG 115 0.0 39.565216 41 GTATAAA 45 9.1671885E-5 38.88889 1 TTACGCT 55 6.663915E-6 38.181816 13 CTTCCGC 65 4.8359834E-7 37.692307 12 >>END_MODULE