##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779736_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 163024 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.54101236627736 34.0 34.0 34.0 34.0 34.0 2 33.55555010305231 34.0 34.0 34.0 34.0 34.0 3 33.56988541564432 34.0 34.0 34.0 34.0 34.0 4 33.61259078417902 34.0 34.0 34.0 34.0 34.0 5 33.612406762194524 34.0 34.0 34.0 34.0 34.0 6 37.14840759642752 38.0 38.0 38.0 36.0 38.0 7 37.149241829423886 38.0 38.0 38.0 36.0 38.0 8 36.99104426342134 38.0 37.0 38.0 35.0 38.0 9 36.99405608990087 38.0 37.0 38.0 35.0 38.0 10-11 36.901983756992834 38.0 37.0 38.0 35.0 38.0 12-13 36.87215072627343 38.0 37.0 38.0 34.5 38.0 14-15 36.903339385611936 38.0 37.0 38.0 35.0 38.0 16-17 36.88702583668662 38.0 37.0 38.0 34.5 38.0 18-19 36.88650444106389 38.0 37.0 38.0 34.5 38.0 20-21 36.9023303317303 38.0 37.0 38.0 35.0 38.0 22-23 36.822035405829816 38.0 37.0 38.0 34.0 38.0 24-25 36.833545980959855 38.0 37.0 38.0 34.0 38.0 26-27 36.73907522818726 38.0 37.0 38.0 34.0 38.0 28-29 36.69366780351359 38.0 37.0 38.0 34.0 38.0 30-31 36.606113210324864 38.0 37.0 38.0 34.0 38.0 32-33 36.60588318284424 38.0 37.0 38.0 34.0 38.0 34-35 36.57796398076357 38.0 37.0 38.0 34.0 38.0 36-37 36.64005913239768 38.0 37.0 38.0 34.0 38.0 38-39 36.30318848758465 38.0 37.0 38.0 34.0 38.0 40-41 36.5371601727353 38.0 37.0 38.0 34.0 38.0 42-43 36.66204975954461 38.0 37.0 38.0 34.0 38.0 44-45 36.647398542545886 38.0 37.0 38.0 34.0 38.0 46-47 36.680264868976344 38.0 37.0 38.0 34.0 38.0 48-49 36.670876680734125 38.0 37.0 38.0 34.0 38.0 50-51 36.63087030130533 38.0 37.0 38.0 34.0 38.0 52-53 36.62260158013544 38.0 37.0 38.0 34.0 38.0 54-55 36.61660859750711 38.0 37.0 38.0 34.0 38.0 56-57 36.638847654333105 38.0 37.0 38.0 34.0 38.0 58-59 36.586152959073516 38.0 37.0 38.0 34.0 38.0 60-61 36.650775345961335 38.0 37.0 38.0 34.0 38.0 62-63 36.640709343409554 38.0 37.0 38.0 34.0 38.0 64-65 36.64090870055943 38.0 37.0 38.0 34.0 38.0 66-67 36.61058494454804 38.0 37.0 38.0 34.0 38.0 68-69 36.484505348905685 38.0 37.0 38.0 34.0 38.0 70-71 35.95225856315635 38.0 37.0 38.0 32.5 38.0 72-73 35.20742344685445 38.0 37.0 38.0 26.0 38.0 74-75 35.12560727254883 38.0 37.0 38.0 25.0 38.0 76 34.571615222298554 38.0 36.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 4.0 22 9.0 23 19.0 24 39.0 25 95.0 26 151.0 27 324.0 28 569.0 29 1045.0 30 1718.0 31 2653.0 32 4190.0 33 6769.0 34 10648.0 35 18225.0 36 26330.0 37 90235.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.46412798115615 18.58622043380116 11.19283050348415 30.756821081558545 2 20.530105996663067 18.481941309255077 36.22411424084797 24.76383845323388 3 18.35741976641476 21.431813720679163 32.816027088036115 27.394739424869957 4 13.639709490627148 21.15823437039945 35.48741289626067 29.71464324271273 5 13.048998920404358 33.94469525959368 38.31460398468937 14.691701835312593 6 28.00998625969183 39.746295024045544 17.353886544312495 14.889832171950143 7 27.787933065070174 28.13512120914712 20.730689959760525 23.346255766022182 8 23.95107468838944 37.46687604279125 18.070958877220534 20.51109039159878 9 23.276940818529788 16.68956718029247 19.053022867798607 40.98046913337913 10-11 24.19889096084012 26.338759937187163 27.275738541564433 22.186610560408283 12-13 24.03388458141133 21.40267690646776 27.224519089213857 27.338919422907054 14-15 22.223721660614387 21.83328835018157 22.224948473844343 33.7180415153597 16-17 25.56280056924134 27.583668662282857 22.920858278535675 23.93267248994013 18-19 25.247202865835703 24.968716262636175 24.128349200117775 25.655731671410344 20-21 21.762439886151732 24.769359112768672 23.732088526842674 29.73611247423692 22-23 22.584098046913336 27.681507017371676 23.898628422808912 25.835766512906076 24-25 25.307623417410934 28.021640985376383 23.771959956816175 22.898775640396508 26-27 24.770279222691137 28.46360045146727 24.67366768083227 22.092452645009324 28-29 22.17464913141623 24.784694278143096 28.21823780547649 24.822418784964174 30-31 24.530130532927664 23.86918490529002 29.159510256158605 22.44117430562371 32-33 21.962103739326725 25.236161546766123 27.771677789773285 25.03005692413387 34-35 21.898616154676613 30.909866031995286 25.533357051722444 21.658160761605654 36-37 25.361296496221414 28.373122975758168 24.123441947197957 22.142138580822458 38-39 21.618289331632152 25.29842231818628 28.17744626558053 24.90584208460104 40-41 21.352377564039653 23.170208067523802 29.270843556776917 26.206570811659635 42-43 24.616620865639415 23.225721366179215 28.973034645205615 23.184623122975758 44-45 20.953356560997154 26.547624889586807 29.511605653155364 22.987412896260672 46-47 23.985425458828146 22.87945333202473 27.145696339189325 25.9894248699578 48-49 23.581190499558346 22.76413288840907 26.744528412994406 26.91014819903818 50-51 20.57335116301894 22.92423201491805 30.140347433506726 26.362069388556286 52-53 19.102708803611737 23.046913337913434 33.57787810383747 24.27249975463735 54-55 18.695100107959565 23.312825105505937 30.959245264500936 27.032829522033563 56-57 22.083864952399644 23.08034399842968 27.555758661301404 27.28003238786927 58-59 19.157301992344685 23.583950829325744 32.42958092060065 24.829166257728925 60-61 22.020684071057023 26.85432819707528 26.971182157228384 24.153805574639318 62-63 18.41538669153008 31.35151879477868 25.17206055550103 25.061033958190205 64-65 18.719022965943665 32.23298410050054 23.917644027873198 25.1303489056826 66-67 18.544202080675237 31.922293650014723 23.539478849739915 25.99402541957013 68-69 18.366620865639415 32.10723574443027 23.521996761213074 26.004146628717244 70-71 19.06805132986554 31.054936696437334 23.735462263225045 26.141549710472077 72-73 19.539454313475314 28.794226616939838 23.92899205025027 27.73732701933458 74-75 19.594047502208266 28.232039454313473 24.431985474531356 27.741927568946906 76 19.76886838747669 27.959686917263717 24.665079988222594 27.606364707037002 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.5 14 3.0 15 4.5 16 7.5 17 9.0 18 13.0 19 21.5 20 38.0 21 50.0 22 54.0 23 98.5 24 185.0 25 231.0 26 302.5 27 398.0 28 519.5 29 617.0 30 782.5 31 1035.5 32 1614.5 33 2106.0 34 2392.0 35 3080.5 36 3938.5 37 4394.0 38 5002.5 39 8155.0 40 11689.5 41 12487.0 42 12294.0 43 11727.5 44 11294.0 45 10923.5 46 10420.0 47 10435.5 48 9772.5 49 8613.0 50 8132.0 51 7702.5 52 6281.5 53 4936.5 54 4583.0 55 4035.0 56 3118.0 57 2357.0 58 1965.0 59 1720.5 60 1469.5 61 1366.0 62 1269.0 63 1223.0 64 1129.0 65 1111.5 66 1206.5 67 1271.0 68 1268.5 69 1281.5 70 1217.5 71 1138.0 72 1171.0 73 1153.0 74 1038.0 75 974.0 76 881.5 77 729.0 78 629.5 79 590.0 80 499.5 81 347.0 82 223.5 83 162.0 84 138.0 85 85.5 86 50.0 87 43.0 88 34.5 89 17.0 90 6.0 91 3.0 92 2.0 93 1.5 94 1.5 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 163024.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.943762881538913 #Duplication Level Percentage of deduplicated Percentage of total 1 51.48436899915508 16.44604475414663 2 20.276134879791073 12.953920895082932 3 9.85098701897227 9.440327804495045 4 4.9638989169675085 6.342624398861517 5 2.8573623166141795 4.563745215428403 6 1.8857055073354327 3.614191775444106 7 1.4651662954143945 3.276204730591815 8 1.059989246485905 2.708803611738149 9 0.892925723941931 2.567106683678477 >10 5.144404332129964 28.29399352242615 >50 0.09025270758122744 1.763544018058691 >100 0.021122974114755357 1.3047158700559427 >500 0.003840540748137338 0.8323927765237019 >1k 0.001920270374068669 0.6845617823142605 >5k 0.001920270374068669 5.207822161154186 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 8490 5.207822161154186 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 1116 0.6845617823142605 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 701 0.4299980370988321 Illumina PCR Primer Index 9 (95% over 21bp) CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 656 0.40239473942487 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 393 0.2410687996859358 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 392 0.24045539307095887 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 259 0.1588723132790264 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 251 0.1539650603592109 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0018402198449308078 0.0 5 0.0 0.0 0.0 0.0030670330748846794 0.0 6 0.0 0.0 0.0 0.0036804396898616155 0.0 7 0.0 0.0 0.0 0.004293846304838552 0.0 8 0.0 0.0 0.0 0.004293846304838552 0.0 9 0.0 0.0 0.0 0.006747472764746295 0.0 10 0.0 0.0 0.0 0.008587692609677103 0.0 11 0.0 0.0 0.0 0.008587692609677103 0.0 12 0.0 0.0 0.0 0.008587692609677103 0.0 13 0.0 0.0 0.0 0.00920109922465404 0.0 14 0.0 0.0 0.0 0.010427912454607911 0.0 15 0.0 0.0 0.0 0.011654725684561782 0.0 16 0.0 0.0 0.0 0.011654725684561782 0.0 17 0.0 0.0 0.0 0.012268132299538718 0.0 18 0.0 0.0 0.0 0.01349494552949259 0.0 19 0.0 0.0 0.0 0.01349494552949259 0.0 20 0.0 0.0 0.0 0.015335165374423398 0.0 21 0.0 0.0 0.0 0.01656197860437727 0.0 22 0.0 0.0 0.0 0.02269604475414663 0.0 23 0.0 0.0 0.0 0.025763077829031308 0.0 24 0.0 0.0 0.0 0.026376484444008245 0.0 25 0.0 0.0 0.0 0.028216704288939052 0.0 26 0.0 0.0 0.0 0.03005692413386986 0.0 27 0.0 0.0 0.0 0.0631808813426244 0.0 28 0.0 0.0 0.0 0.09446461870644814 0.0 29 0.0 0.0 0.0 0.12881538914515653 0.0 30 0.0 0.0 0.0 0.15764550004907252 0.0 31 0.0 0.0 0.0 0.1981303366375503 0.0 32 0.0 0.0 0.0 0.2373883599960742 0.0 33 0.0 0.0 0.0 0.287074295809206 0.0 34 0.0 0.0 0.0 0.3741780351359309 0.0 35 0.0 0.0 0.0 0.4845912258317794 0.0 36 0.0 0.0 0.0 0.6876288153891451 0.0 37 0.0 0.0 0.0 1.06303366375503 0.0 38 0.0 0.0 0.0 1.5279958779075473 0.0 39 0.0 0.0 0.0 2.0561389734026894 0.0 40 0.0 0.0 0.0 2.727819216802434 0.0 41 0.0 0.0 0.0 3.5283148493473355 0.0 42 0.0 0.0 0.0 4.4453577387378544 0.0 43 0.0 0.0 0.0 5.417607223476298 0.0 44 0.0 0.0 0.0 6.300912749043086 0.0 45 0.0 0.0 0.0 7.232677397193052 0.0 46 0.0 0.0 0.0 8.185297870252233 0.0 47 0.0 0.0 0.0 9.079031308273628 0.0 48 0.0 0.0 0.0 9.9813524389047 0.0 49 0.0 0.0 0.0 10.880606536460888 0.0 50 0.0 0.0 0.0 11.776793600942193 0.0 51 0.0 0.0 0.0 12.733707920306212 0.0 52 0.0 0.0 0.0 13.739694768868388 0.0 53 0.0 0.0 0.0 14.80027480616351 0.0 54 0.0 0.0 0.0 15.768843851212091 0.0 55 0.0 0.0 0.0 16.668711355383255 0.0 56 0.0 0.0 0.0 17.480248306997744 0.0 57 0.0 0.0 0.0 18.236578663264304 0.0 58 0.0 0.0 0.0 19.012538031210127 0.0 59 0.0 0.0 0.0 19.778069486701344 0.0 60 0.0 0.0 0.0 20.58224555893611 0.0 61 0.0 0.0 0.0 21.322013936598292 0.0 62 0.0 0.0 0.0 22.12680341544803 0.0 63 0.0 0.0 0.0 22.972691137501226 0.0 64 0.0 0.0 0.0 23.83698105800373 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTAGAG 15 0.0022214714 70.0 18 TTAATAC 45 2.6844646E-8 54.444447 3 ATGGACA 20 0.0069413926 52.5 8 GAACGTA 20 0.0069413926 52.5 1 GCGATAA 20 0.0069413926 52.5 11 GGTGCAA 20 0.0069413926 52.5 23 TAGGACG 20 0.0069413926 52.5 4 CAATACG 20 0.0069413926 52.5 69 ACCCAGA 20 0.0069413926 52.5 12 GAGGCAC 20 0.0069413926 52.5 22 CTATAAC 55 2.2664608E-9 50.90909 4 ATCTCGT 1330 0.0 47.894737 37 TCTCGTA 1340 0.0 47.537315 38 TCTTCTG 1395 0.0 47.419353 50 CTCGTAT 1385 0.0 47.256313 39 CGTATGC 1400 0.0 47.25 41 CCGTCTT 1400 0.0 47.25 47 TCGTATG 1400 0.0 47.25 40 CGTCTTC 1405 0.0 47.081852 48 TATGCCG 1405 0.0 47.081852 43 >>END_MODULE