##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779735_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 43387 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.44363519026437 34.0 34.0 34.0 34.0 34.0 2 33.470624841542396 34.0 34.0 34.0 34.0 34.0 3 33.51688293728536 34.0 34.0 34.0 34.0 34.0 4 33.550049554013874 34.0 34.0 34.0 34.0 34.0 5 33.55265402078964 34.0 34.0 34.0 34.0 34.0 6 37.04289303247516 38.0 37.0 38.0 35.0 38.0 7 37.05709083365985 38.0 37.0 38.0 35.0 38.0 8 36.86279300251228 38.0 37.0 38.0 35.0 38.0 9 36.841634591006525 38.0 37.0 38.0 34.0 38.0 10-11 36.7423421762279 38.0 37.0 38.0 34.0 38.0 12-13 36.72386890082282 38.0 37.0 38.0 34.0 38.0 14-15 36.75188420494618 38.0 37.0 38.0 34.0 38.0 16-17 36.630995459469425 38.0 37.0 38.0 34.0 38.0 18-19 36.6362274413995 38.0 37.0 38.0 34.0 38.0 20-21 36.71728858874778 38.0 37.0 38.0 34.0 38.0 22-23 36.62389655887708 38.0 37.0 38.0 34.0 38.0 24-25 36.57944776085003 38.0 37.0 38.0 34.0 38.0 26-27 36.377590061539166 38.0 37.0 38.0 34.0 38.0 28-29 36.29445456012169 38.0 37.0 38.0 34.0 38.0 30-31 36.356915665982896 38.0 37.0 38.0 34.0 38.0 32-33 36.026885933574576 38.0 37.0 38.0 32.5 38.0 34-35 35.86722981538249 38.0 36.5 38.0 31.5 38.0 36-37 35.79569917256321 38.0 36.0 38.0 31.0 38.0 38-39 34.51864613824417 38.0 34.0 38.0 24.5 38.0 40-41 35.676562103856 38.0 36.5 38.0 31.5 38.0 42-43 36.214799363864756 38.0 37.0 38.0 34.0 38.0 44-45 36.21138820383986 38.0 37.0 38.0 34.0 38.0 46-47 36.244209094890174 38.0 37.0 38.0 34.0 38.0 48-49 36.194562887500865 38.0 37.0 38.0 33.5 38.0 50-51 36.00507064328025 38.0 37.0 38.0 32.0 38.0 52-53 36.037453615138176 38.0 37.0 38.0 33.5 38.0 54-55 36.03262497983267 38.0 37.0 38.0 33.0 38.0 56-57 36.04558969276512 38.0 37.0 38.0 32.5 38.0 58-59 35.8777053034319 38.0 37.0 38.0 32.0 38.0 60-61 35.94095005416369 38.0 37.0 38.0 32.0 38.0 62-63 36.030469956438566 38.0 37.0 38.0 32.5 38.0 64-65 36.11291400649964 38.0 37.0 38.0 34.0 38.0 66-67 36.022679604489824 38.0 37.0 38.0 32.0 38.0 68-69 35.60689837969899 38.0 36.0 38.0 30.5 38.0 70-71 34.11261437757854 38.0 34.5 38.0 24.5 38.0 72-73 31.591409869315694 38.0 26.5 38.0 11.0 38.0 74-75 31.312167239034736 38.0 25.0 38.0 11.0 38.0 76 30.805471685066955 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 2.0 22 8.0 23 11.0 24 22.0 25 59.0 26 128.0 27 203.0 28 355.0 29 613.0 30 883.0 31 1202.0 32 1843.0 33 2791.0 34 4442.0 35 7029.0 36 6873.0 37 16921.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.875607900984164 15.894161845714155 12.512964712932446 40.71726554036923 2 15.944868278516605 15.412450734090857 45.81556687487035 22.827114112522185 3 16.643234148477653 18.219743241062993 41.752137737110196 23.38488487334916 4 13.105308041579274 29.594118053794915 30.149583976767236 27.150989927858575 5 12.86790974254961 30.62438057482656 42.37905363357688 14.12865604904695 6 25.173439048562933 43.73429829211515 15.064420218037661 16.027842441284257 7 22.68882384124277 26.397307949385763 17.645838615253417 33.268029594118055 8 19.807776522921614 43.6351902643649 15.901076359278123 20.655956853435363 9 19.43669762832185 16.394311660174708 15.43319427478277 48.735796436720676 10-11 21.671237928411735 28.28727499020444 27.361882591559684 22.67960448982414 12-13 21.675847604121053 16.09929241477862 29.60679466199553 32.6180653191048 14-15 21.074284924055593 16.88524212321663 18.359185931269735 43.68128702145804 16-17 30.914790144513333 26.99080369695992 16.448475349759146 25.645930808767602 18-19 31.119920713577798 20.645585083089404 16.9163574342545 31.318136769078297 20-21 21.61592181989997 18.293498052412012 16.919814691036485 43.17076543665153 22-23 21.724249199068847 28.290732246986423 16.627100283495054 33.35791827044967 24-25 31.108396524304517 28.63761034411229 16.831078433632193 23.422914697951 26-27 30.79263373821652 30.59672252057068 17.839444995044598 20.771198746168206 28-29 21.479936386475213 29.667872865143934 19.38138151981008 29.470809228570772 30-31 20.89681240924701 19.858482955724067 36.492497752783095 22.752206882245833 32-33 31.025422361536865 17.33122824809275 21.61015972526333 30.033189665107056 34-35 31.065757023993363 18.290040795630027 18.276211768502083 32.36799041187452 36-37 32.55122502131975 26.148385461082814 19.047180030884828 22.25320948671261 38-39 21.120381681148732 19.982944199875536 28.479728951068296 30.41694516790744 40-41 19.760527346901146 17.47067093829949 30.650886210155114 32.11791550464425 42-43 29.726646230437687 17.59858943923295 29.908728420955587 22.766035909373773 44-45 20.327517459146748 27.024223845852447 31.298545647313713 21.349713047687093 46-47 29.142369834282157 18.219743241062993 22.558600502454652 30.079286422200198 48-49 28.590361168091828 16.799963122594324 20.57298269066771 34.03669301864613 50-51 20.66287136699933 17.214833936432573 30.904418374167374 31.217876322400716 52-53 18.44446493189204 17.084610597644456 40.50867771452278 23.96224675594072 54-55 18.457141540092657 17.107658976191026 32.855463618134465 31.579735865581853 56-57 28.322999976951625 17.35888630234863 23.522022725701248 30.796090994998504 58-59 20.20766589070459 19.10480097725125 37.49971189526817 23.187821236775992 60-61 27.58084218775209 29.624080945905458 21.815290294327795 20.979786572014657 62-63 18.30156498490331 42.71210270357481 18.069928780510292 20.916403531011593 64-65 17.490262060064072 43.75504183280706 17.773757116186875 20.98093899094199 66-67 17.65851522345403 43.83455873879273 17.154908152211494 21.352017885541752 68-69 17.417659667642383 43.79998617097287 17.574388641759054 21.207965519625695 70-71 17.74840389978565 41.1736234355913 18.295802890266668 22.782169774356372 72-73 18.727959988014845 35.17874017562864 20.25837232350704 25.83492751284947 74-75 18.904280083896097 32.188213059211286 21.552538778896903 27.35496807799571 76 19.466660520432388 32.70564915758176 21.0016825316339 26.826007790351948 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 3.0 16 8.0 17 10.0 18 15.5 19 27.0 20 37.5 21 42.0 22 48.5 23 81.5 24 121.0 25 134.0 26 159.5 27 208.0 28 258.0 29 285.0 30 332.0 31 405.5 32 484.5 33 537.0 34 595.0 35 714.5 36 808.0 37 840.0 38 889.5 39 1015.0 40 1230.5 41 2600.0 42 3830.0 43 4282.0 44 4358.0 45 3358.5 46 2735.0 47 2290.5 48 1611.5 49 1236.0 50 1095.0 51 1001.5 52 821.0 53 728.0 54 722.0 55 677.5 56 625.5 57 598.0 58 578.0 59 574.5 60 615.5 61 690.5 62 721.0 63 702.5 64 719.0 65 755.0 66 766.5 67 777.0 68 786.0 69 788.0 70 792.5 71 804.0 72 777.0 73 753.5 74 692.5 75 628.0 76 578.0 77 508.5 78 397.0 79 305.0 80 278.5 81 222.0 82 156.0 83 120.0 84 92.0 85 53.0 86 32.5 87 23.0 88 16.0 89 6.0 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 43387.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.93401249222117 #Duplication Level Percentage of deduplicated Percentage of total 1 66.1061655126937 32.34839929010994 2 21.153030945315813 20.7020536105285 3 7.790495030851114 11.436605434807662 4 2.722434176440111 5.328785119966811 5 1.1257124016767932 2.754281236315025 6 0.32499646742970184 0.9542028718279669 7 0.26376524892845365 0.9034964390255146 8 0.11775234327163112 0.46096757093138496 9 0.08007159342470915 0.3526401917625095 >10 0.23550468654326223 1.8507847972895106 >50 0.023550468654326223 0.9518980339733099 >100 0.0423908435777872 4.522091870836887 >500 0.009420187461730487 3.385806808491023 >1k 0.0 0.0 >5k 0.004710093730865244 14.047986724133956 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 6095 14.047986724133956 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 834 1.9222347707838754 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 635 1.4635720377071473 RNA PCR Primer, Index 30 (95% over 22bp) CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 396 0.9127157904441423 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 303 0.6983658699610482 No Hit CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 290 0.6684029778505082 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 262 0.6038675179201143 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 212 0.4886256251872681 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 130 0.29962892110540024 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 129 0.29732408325074333 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 123 0.2834950561228018 No Hit TATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCT 117 0.2696660289948602 RNA PCR Primer, Index 30 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAGCTCGTATGCCGT 93 0.214349920483094 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 92 0.2120450826284371 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 86 0.19821605550049554 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCG 82 0.18899670408186786 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATATCGTATGCCGT 60 0.13829027127941548 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.006914513563970774 0.0 2 0.0 0.0 0.0 0.006914513563970774 0.0 3 0.0 0.0 0.0 0.006914513563970774 0.0 4 0.0 0.0 0.0 0.011524189273284625 0.0 5 0.0 0.0 0.0 0.011524189273284625 0.0 6 0.0 0.0 0.0 0.011524189273284625 0.0 7 0.0 0.0 0.0 0.013829027127941549 0.0 8 0.0 0.0 0.0 0.013829027127941549 0.0 9 0.0 0.0 0.0 0.016133864982598473 0.0 10 0.0 0.0 0.0 0.016133864982598473 0.0 11 0.0 0.0 0.0 0.018438702837255398 0.0 12 0.0 0.0 0.0 0.018438702837255398 0.0 13 0.0 0.0 0.0 0.020743540691912324 0.0 14 0.0 0.0 0.0 0.020743540691912324 0.0 15 0.0 0.0 0.0 0.020743540691912324 0.0 16 0.0 0.0 0.0 0.020743540691912324 0.0 17 0.0 0.0 0.0 0.020743540691912324 0.0 18 0.0 0.0 0.0 0.02304837854656925 0.0 19 0.0 0.0 0.0 0.02304837854656925 0.0 20 0.0 0.0 0.0 0.025353216401226175 0.0 21 0.0 0.0 0.0 0.025353216401226175 0.0 22 0.0 0.0 0.0 0.029962892110540023 0.0 23 0.0 0.0 0.0 0.032267729965196945 0.0 24 0.0 0.0 0.0 0.03457256781985387 0.0 25 0.0 0.0 0.0 0.03457256781985387 0.0 26 0.0 0.0 0.0 0.04148708138382465 0.0 27 0.0 0.0 0.0 0.059925784221080046 0.0 28 0.0 0.0 0.0 0.11524189273284624 0.0 29 0.0 0.0 0.0 0.17747251480858323 0.0 30 0.0 0.0 0.0 0.2235692719017217 0.0 31 0.0 0.0 0.0 0.2650563532855464 0.0 32 0.0 0.0 0.0 0.3434208403438818 0.0 33 0.0 0.0 0.0 0.4356143545301588 0.0 34 0.0 0.0 0.0 0.583123977228202 0.0 35 0.0 0.0 0.0 0.7490723027635006 0.0 36 0.0 0.0 0.0 1.1178463595086086 0.0 37 0.0 0.0 0.0 1.4635720377071473 0.0 38 0.0 0.0 0.0 1.8553944729988245 0.0 39 0.0 0.0 0.0 2.2564362597091296 0.0 40 0.0 0.0 0.0 2.6851361006753174 0.0 41 0.0 0.0 0.0 3.0838730495309656 0.0 42 0.0 0.0 0.0 3.588632539700832 0.0 43 0.0 0.0 0.0 3.982759812847166 0.0 44 0.0 0.0 0.0 4.43681287021458 0.0 45 0.0 0.0 0.0 4.971535252494987 0.0 46 0.0 0.0 0.0 5.556964067577846 0.0 47 0.0 0.0 0.0 6.151612234079333 0.0 48 0.0 0.0 0.0 6.534215317952382 0.0 49 0.0 0.0 0.0 6.997487726738424 0.0 50 0.0 0.0 0.0 7.426187567704612 0.0 51 0.0 0.0 0.0 7.859497084380114 0.0 52 0.0 0.0 0.0 8.33429368243944 0.0 53 0.0 0.0 0.0 8.70998225274852 0.0 54 0.0 0.0 0.0 9.090280498766912 0.0 55 0.0 0.0 0.0 9.525894853297071 0.0 56 0.0 0.0 0.0 9.910802775024777 0.0 57 0.0 0.0 0.0 10.316454237444395 0.0 58 0.0 0.0 0.0 10.71058151059073 0.0 59 0.0 0.0 0.0 11.04017332380667 0.0 60 0.0 0.0 0.0 11.51957959757531 0.0 61 0.0 0.0 0.0 11.888353654320419 0.0 62 0.0 0.0 0.0 12.204116440408418 0.0 63 0.0 0.0 0.0 12.568280821444212 0.0 64 0.0 0.0 0.0 12.994675824555742 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACAC 25 2.7951155E-6 70.00001 2 ATCCTCG 15 0.0022104513 70.0 37 TACCAAC 15 0.0022104513 70.0 9 TAGGATA 15 0.0022104513 70.0 4 CTATACA 40 1.0353688E-8 61.25 1 TCTTAAT 30 8.245432E-6 58.333332 1 TCTTTAT 70 0.0 55.0 1 ACTCTAC 20 0.006907221 52.5 10 AAACAAG 20 0.006907221 52.5 68 TGCTATC 20 0.006907221 52.5 2 AAGATTT 20 0.006907221 52.5 36 CGTTTGG 20 0.006907221 52.5 67 TTTATAC 75 0.0 51.333336 3 CTTTACA 35 2.0540985E-5 50.0 1 TTACACA 35 2.0540985E-5 50.0 3 CTTTATA 80 0.0 48.125 2 CGGACCT 30 5.8166776E-4 46.666664 34 ATCTCGT 1020 0.0 42.205883 37 TCTCGTA 1020 0.0 42.205883 38 GGATCTC 1015 0.0 42.068966 35 >>END_MODULE