##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779734_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 108406 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.52134568197332 34.0 34.0 34.0 34.0 34.0 2 33.53510875781783 34.0 34.0 34.0 34.0 34.0 3 33.54715606147261 34.0 34.0 34.0 34.0 34.0 4 33.609864767632786 34.0 34.0 34.0 34.0 34.0 5 33.59672896334151 34.0 34.0 34.0 34.0 34.0 6 37.1419017397561 38.0 38.0 38.0 36.0 38.0 7 37.152030330424516 38.0 38.0 38.0 36.0 38.0 8 36.96897773185986 38.0 37.0 38.0 35.0 38.0 9 36.97849750013837 38.0 37.0 38.0 35.0 38.0 10-11 36.889909230116416 38.0 37.0 38.0 35.0 38.0 12-13 36.86242458904489 38.0 37.0 38.0 34.5 38.0 14-15 36.9006420308839 38.0 37.0 38.0 35.0 38.0 16-17 36.86419109643377 38.0 37.0 38.0 34.5 38.0 18-19 36.86275667398483 38.0 37.0 38.0 34.0 38.0 20-21 36.88751083888346 38.0 37.0 38.0 35.0 38.0 22-23 36.812473479327714 38.0 37.0 38.0 34.0 38.0 24-25 36.79723447041677 38.0 37.0 38.0 34.0 38.0 26-27 36.67183089496891 38.0 37.0 38.0 34.0 38.0 28-29 36.61061195874767 38.0 37.0 38.0 34.0 38.0 30-31 36.5010885006365 38.0 37.0 38.0 34.0 38.0 32-33 36.55121948969614 38.0 37.0 38.0 34.0 38.0 34-35 36.36938914820213 38.0 37.0 38.0 34.0 38.0 36-37 36.4306403704592 38.0 37.0 38.0 34.0 38.0 38-39 36.12303285795989 38.0 37.0 38.0 34.0 38.0 40-41 36.431336826374924 38.0 37.0 38.0 34.0 38.0 42-43 36.57647639429552 38.0 37.0 38.0 34.0 38.0 44-45 36.55412062062985 38.0 37.0 38.0 34.0 38.0 46-47 36.58000479678247 38.0 37.0 38.0 34.0 38.0 48-49 36.571661162666274 38.0 37.0 38.0 34.0 38.0 50-51 36.49454827223585 38.0 37.0 38.0 34.0 38.0 52-53 36.47663874693283 38.0 37.0 38.0 34.0 38.0 54-55 36.469042303931516 38.0 37.0 38.0 34.0 38.0 56-57 36.50981956718263 38.0 37.0 38.0 34.0 38.0 58-59 36.42271645480877 38.0 37.0 38.0 34.0 38.0 60-61 36.48737615999114 38.0 37.0 38.0 34.0 38.0 62-63 36.51070973931333 38.0 37.0 38.0 34.0 38.0 64-65 36.53938896371049 38.0 37.0 38.0 34.0 38.0 66-67 36.48419367931665 38.0 37.0 38.0 34.0 38.0 68-69 36.29099404092024 38.0 37.0 38.0 34.0 38.0 70-71 35.437415825692305 38.0 36.5 38.0 29.0 38.0 72-73 34.12304669483239 38.0 36.0 38.0 21.5 38.0 74-75 33.93879028836042 38.0 36.0 38.0 21.0 38.0 76 33.385670534841246 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 0.0 20 1.0 21 2.0 22 9.0 23 23.0 24 36.0 25 87.0 26 159.0 27 295.0 28 485.0 29 870.0 30 1385.0 31 2006.0 32 3182.0 33 4978.0 34 7885.0 35 13643.0 36 18120.0 37 55239.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.47763038946184 17.055329040828 11.122078113757542 34.34496245595262 2 19.50353301477778 17.015663339667547 38.60026197811929 24.88054166743538 3 18.448240872276443 19.46940206261646 35.021124292013354 27.061232773093742 4 13.607180414368209 23.396306477501245 33.08488460048336 29.911628507647176 5 13.953102226814016 31.812814788849327 39.00245373872295 15.231629245613712 6 28.439385273877832 40.04667638322602 16.24541077062155 15.268527572274598 7 27.130417135582903 27.455122410198697 18.30618231463203 27.108278139586368 8 23.586332859804806 38.92219987823552 16.50646643174732 20.98500083021235 9 22.21187019168681 16.369942623102045 17.10790915631976 44.31027802889139 10-11 23.825249524934044 26.401213954947146 26.835230522295817 22.938305997823 12-13 23.620002582882865 19.320425068723132 27.80058299356124 29.25898935483276 14-15 22.232625500433556 19.77427448665203 20.200911388668523 37.792188624245895 16-17 27.78951349556298 26.779883032304486 20.748390310499417 24.682213161633122 18-19 27.629467003671383 23.318819991513383 21.32031437374315 27.73139863107208 20-21 21.96372894489235 22.073501466708485 21.193476375846355 34.76929321255281 22-23 22.679095253030276 27.18069110565836 21.266350571001606 28.873863070309763 24-25 27.80750142981016 27.724941423906422 20.947180045384943 23.520377100898475 26-27 27.784439975647103 28.630334114347917 21.310167333911405 22.275058576093574 28-29 22.31472427725403 28.530247403280264 22.278748408759665 26.876279910706046 30-31 27.514159732856115 23.67350515654115 26.91179455011715 21.90054056048558 32-33 26.744829621976645 28.111912624762468 23.948397690164754 21.194860063096137 34-35 22.897256609412764 27.982307252366105 27.792742099145805 21.32769403907533 36-37 21.356751471320777 26.982823828939356 29.36368835673302 22.296736343006845 38-39 21.086471228529785 23.01579248381086 28.711049203918606 27.18668708374075 40-41 21.145969780270466 21.16165156910134 29.305573492242125 28.386805158386068 42-43 26.57555854841983 21.23452576425659 28.802833791487558 23.387081895836022 44-45 21.39641717248123 26.233787797723373 29.454550486135457 22.915244543659945 46-47 26.38322602069996 20.926885965721453 24.837186133608842 27.852701879969743 48-49 25.869878051030387 20.52607789236758 24.157795693965276 29.446248362636755 50-51 21.16488017268417 20.67966717709352 29.617364352526614 28.5380882976957 52-53 19.70601258232939 20.788056011659872 35.28771470213826 24.218216703872482 54-55 19.38269099496338 20.901979595225356 31.08822389904618 28.627105510765087 56-57 24.60887773739461 20.708724609338965 25.82836743353689 28.854030219729538 58-59 20.038097522277365 21.46929136763648 33.98889360367507 24.503717506411085 60-61 24.58489382506503 27.05293064959504 24.98155083666956 23.380624688670366 62-63 18.930686493367528 34.929800933527666 22.537959153552386 23.601553419552424 64-65 18.76187664889397 35.737413058317806 21.502038632548015 23.99867166024021 66-67 18.72682323856613 35.43669169603159 21.232219618840286 24.604265446562 68-69 18.641957087246094 35.79414423555892 21.231297160673762 24.332601516521226 70-71 19.183440030994596 34.267475969964764 21.50895706879693 25.040126930243712 72-73 19.951386454624284 31.1684777595336 22.07119532129218 26.808940464549934 74-75 20.10082467760087 30.487242403556998 22.51628138663912 26.89565153220301 76 20.31068391048466 30.69756286552405 22.501522055974764 26.490231168016532 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 3.5 15 4.5 16 11.0 17 20.0 18 22.5 19 24.0 20 23.5 21 24.0 22 38.0 23 72.0 24 101.5 25 111.0 26 149.5 27 224.0 28 365.0 29 470.0 30 536.5 31 662.0 32 931.0 33 1141.0 34 1305.0 35 1725.5 36 2297.0 37 2612.0 38 4717.0 39 7738.5 40 8290.5 41 7322.0 42 6718.0 43 6273.5 44 5760.5 45 5572.0 46 5452.0 47 5483.0 48 5318.5 49 4849.5 50 4576.0 51 4308.5 52 3561.5 53 2961.5 54 2841.0 55 2661.5 56 2272.0 57 1883.0 58 1704.0 59 1600.5 60 1467.0 61 1360.0 62 1283.0 63 1300.5 64 1281.0 65 1292.0 66 1363.0 67 1386.0 68 1363.5 69 1282.5 70 1231.5 71 1239.0 72 1226.0 73 1193.5 74 1077.0 75 980.0 76 922.0 77 780.0 78 634.5 79 573.0 80 517.0 81 395.5 82 260.0 83 190.0 84 163.5 85 110.5 86 61.5 87 39.0 88 28.0 89 13.5 90 6.5 91 3.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 108406.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.11678320388171 #Duplication Level Percentage of deduplicated Percentage of total 1 54.901239393869716 22.02461118388281 2 22.451654441352986 18.013763075844512 3 9.935845846076019 11.957825212626608 4 4.686242498102969 7.519878973488553 5 2.389109889857205 4.79217017508256 6 1.4072524086550622 3.387266387469328 7 0.926671112235278 2.60225448775898 8 0.6875301800455288 2.2065199343209785 9 0.4920784566212146 1.7766544287216575 >10 2.0763871323783025 12.361861889563308 >50 0.016096024282002346 0.37820784827408077 >100 0.020694888362574444 1.9002638230356255 >500 0.004598864080572099 1.3412541741232036 >1k 0.0022994320402860494 1.163219747984429 >5k 0.0022994320402860494 8.574248657823368 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT 9295 8.574248657823368 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 1261 1.163219747984429 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 773 0.7130601627216205 Illumina PCR Primer Index 10 (95% over 23bp) CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 681 0.6281940114015829 No Hit CTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 407 0.37544047377451434 Illumina PCR Primer Index 10 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 380 0.35053410327841633 No Hit CTTTACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 339 0.31271331845100825 Illumina PCR Primer Index 10 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACAGTAGATTACCTCGTATGCCGT 187 0.1724996771396417 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC 165 0.15220559747615445 No Hit TTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC 159 0.14667084847702155 Illumina PCR Primer Index 10 (95% over 21bp) TATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCT 148 0.13652380864527794 Illumina PCR Primer Index 10 (95% over 22bp) CTTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 141 0.1300666014796229 No Hit CTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG 134 0.12360939431396785 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 9.224581665221482E-4 0.0 4 0.0 0.0 0.0 0.0027673744995664446 0.0 5 0.0 0.0 0.0 0.004612290832610741 0.0 6 0.0 0.0 0.0 0.004612290832610741 0.0 7 0.0 0.0 0.0 0.004612290832610741 0.0 8 0.0 0.0 0.0 0.004612290832610741 0.0 9 0.0 0.0 0.0 0.007379665332177186 0.0 10 0.0 0.0 0.0 0.011991956164787926 0.0 11 0.0 0.0 0.0 0.016604246997398667 0.0 12 0.0 0.0 0.0 0.016604246997398667 0.0 13 0.0 0.0 0.0 0.016604246997398667 0.0 14 0.0 0.0 0.0 0.017526705163920814 0.0 15 0.0 0.0 0.0 0.019371621496965113 0.0 16 0.0 0.0 0.0 0.019371621496965113 0.0 17 0.0 0.0 0.0 0.022138995996531557 0.0 18 0.0 0.0 0.0 0.023983912329575852 0.0 19 0.0 0.0 0.0 0.0267512868291423 0.0 20 0.0 0.0 0.0 0.03136357766175304 0.0 21 0.0 0.0 0.0 0.03597586849436378 0.0 22 0.0 0.0 0.0 0.03874324299393023 0.0 23 0.0 0.0 0.0 0.04151061749349667 0.0 24 0.0 0.0 0.0 0.04612290832610741 0.0 25 0.0 0.0 0.0 0.05073519915871815 0.0 26 0.0 0.0 0.0 0.055347489991328894 0.0 27 0.0 0.0 0.0 0.0802538604874269 0.0 28 0.0 0.0 0.0 0.11346235448222423 0.0 29 0.0 0.0 0.0 0.14667084847702155 0.0 30 0.0 0.0 0.0 0.1872590078039961 0.0 31 0.0 0.0 0.0 0.24352895596184712 0.0 32 0.0 0.0 0.0 0.3062561112853532 0.0 33 0.0 0.0 0.0 0.37082818294190356 0.0 34 0.0 0.0 0.0 0.4750659557589063 0.0 35 0.0 0.0 0.0 0.5894507684076528 0.0 36 0.0 0.0 0.0 0.7887017323764367 0.0 37 0.0 0.0 0.0 1.1604523734848624 0.0 38 0.0 0.0 0.0 1.5368153054258988 0.0 39 0.0 0.0 0.0 1.9620685201926094 0.0 40 0.0 0.0 0.0 2.546906997767651 0.0 41 0.0 0.0 0.0 3.2138442521631645 0.0 42 0.0 0.0 0.0 3.9222921240521744 0.0 43 0.0 0.0 0.0 4.636274744940317 0.0 44 0.0 0.0 0.0 5.3078242901684405 0.0 45 0.0 0.0 0.0 5.956312381233511 0.0 46 0.0 0.0 0.0 6.638008966293379 0.0 47 0.0 0.0 0.0 7.431322989502426 0.0 48 0.0 0.0 0.0 8.09826024389794 0.0 49 0.0 0.0 0.0 8.81962253011826 0.0 50 0.0 0.0 0.0 9.441359334354187 0.0 51 0.0 0.0 0.0 10.159031787908418 0.0 52 0.0 0.0 0.0 10.961570392782688 0.0 53 0.0 0.0 0.0 11.785325535486965 0.0 54 0.0 0.0 0.0 12.537128941202516 0.0 55 0.0 0.0 0.0 13.220670442595429 0.0 56 0.0 0.0 0.0 13.89590982048964 0.0 57 0.0 0.0 0.0 14.49643008689556 0.0 58 0.0 0.0 0.0 15.142150803461064 0.0 59 0.0 0.0 0.0 15.743593528033504 0.0 60 0.0 0.0 0.0 16.32935446377507 0.0 61 0.0 0.0 0.0 16.9344870210136 0.0 62 0.0 0.0 0.0 17.511945833256462 0.0 63 0.0 0.0 0.0 18.15951146615501 0.0 64 0.0 0.0 0.0 18.8172241388853 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTTAT 65 0.0 64.61539 1 TCACGCA 20 0.006935148 52.500004 30 AGCCGAA 20 0.006935148 52.500004 12 TTAGATT 20 0.006935148 52.500004 30 CACGCAA 20 0.006935148 52.500004 31 TGCGGAT 20 0.006935148 52.500004 4 TACTGTA 20 0.006935148 52.500004 16 GTCCGGA 20 0.006935148 52.500004 34 ATCGCTC 20 0.006935148 52.500004 68 TCAGTGG 20 0.006935148 52.500004 70 CTTGTAC 30 5.85574E-4 46.666664 3 TTGTACT 30 5.85574E-4 46.666664 4 CCCAAAG 30 5.85574E-4 46.666664 61 CTTTATA 90 0.0 46.666664 2 CCGTCTT 1600 0.0 43.968746 47 TCTTCTG 1605 0.0 43.831776 50 CGTCTTC 1610 0.0 43.695652 48 TATGCCG 1610 0.0 43.695652 43 GTCTTCT 1610 0.0 43.695652 49 CGTATGC 1615 0.0 43.560375 41 >>END_MODULE