##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779733_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 151226 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.553522542419955 34.0 34.0 34.0 34.0 34.0 2 33.56635102429476 34.0 34.0 34.0 34.0 34.0 3 33.581685688968825 34.0 34.0 34.0 34.0 34.0 4 33.638944361419334 34.0 34.0 34.0 34.0 34.0 5 33.62231362331874 34.0 34.0 34.0 34.0 34.0 6 37.20026979487654 38.0 38.0 38.0 36.0 38.0 7 37.19618319601127 38.0 38.0 38.0 36.0 38.0 8 37.033010196659305 38.0 37.0 38.0 35.0 38.0 9 37.03865076111251 38.0 37.0 38.0 36.0 38.0 10-11 36.9578147937524 38.0 37.0 38.0 35.0 38.0 12-13 36.933787840715226 38.0 37.0 38.0 35.0 38.0 14-15 36.96726092074114 38.0 37.0 38.0 35.0 38.0 16-17 36.93522277915173 38.0 37.0 38.0 35.0 38.0 18-19 36.947862801370135 38.0 37.0 38.0 35.0 38.0 20-21 36.957097324534146 38.0 37.0 38.0 35.0 38.0 22-23 36.879022125824925 38.0 37.0 38.0 35.0 38.0 24-25 36.87063732426964 38.0 37.0 38.0 35.0 38.0 26-27 36.77986920238583 38.0 37.0 38.0 34.5 38.0 28-29 36.69809424305344 38.0 37.0 38.0 34.0 38.0 30-31 36.60064737545131 38.0 37.0 38.0 34.0 38.0 32-33 36.64337151019005 38.0 37.0 38.0 34.0 38.0 34-35 36.61036792615026 38.0 37.0 38.0 34.0 38.0 36-37 36.64735230714295 38.0 37.0 38.0 34.0 38.0 38-39 36.260328911695076 38.0 37.0 38.0 34.0 38.0 40-41 36.509158478039495 38.0 37.0 38.0 34.0 38.0 42-43 36.6326524539431 38.0 37.0 38.0 34.0 38.0 44-45 36.61654080647508 38.0 37.0 38.0 34.0 38.0 46-47 36.653277214235644 38.0 37.0 38.0 34.0 38.0 48-49 36.636041421448695 38.0 37.0 38.0 34.0 38.0 50-51 36.567015592556835 38.0 37.0 38.0 34.0 38.0 52-53 36.560326927909216 38.0 37.0 38.0 34.0 38.0 54-55 36.5604757118485 38.0 37.0 38.0 34.0 38.0 56-57 36.58057146257919 38.0 37.0 38.0 34.0 38.0 58-59 36.50921137899567 38.0 37.0 38.0 34.0 38.0 60-61 36.567862007855794 38.0 37.0 38.0 34.0 38.0 62-63 36.56423167973761 38.0 37.0 38.0 34.0 38.0 64-65 36.569207675928745 38.0 37.0 38.0 34.0 38.0 66-67 36.53321518786452 38.0 37.0 38.0 34.0 38.0 68-69 36.384599870392655 38.0 37.0 38.0 34.0 38.0 70-71 35.73739965349874 38.0 37.0 38.0 31.0 38.0 72-73 34.75467181569307 38.0 37.0 38.0 23.5 38.0 74-75 34.6430739423115 38.0 37.0 38.0 23.0 38.0 76 34.08392075436763 38.0 35.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 0.0 20 2.0 21 8.0 22 14.0 23 24.0 24 55.0 25 129.0 26 233.0 27 365.0 28 592.0 29 1075.0 30 1700.0 31 2551.0 32 4078.0 33 6090.0 34 10054.0 35 17436.0 36 23899.0 37 82920.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.37616547419094 17.011624985121607 11.373044317776044 32.2391652229114 2 20.103685874122174 18.6191527911867 36.75756814304418 24.519593191646937 3 20.08847684921905 19.24206155026252 33.732955973179216 26.936505627339212 4 14.695224366180417 21.559123431156017 31.84571436128708 31.899937841376484 5 15.111158134183276 31.209580363165063 37.30773808736593 16.371523415285733 6 30.75066456826207 37.27401372779813 16.16058085249891 15.81474085144089 7 27.560075648367345 27.63281446312142 18.40490391863833 26.402205969872906 8 24.32716596352479 38.00603070900507 17.562456191395658 20.104347136074484 9 23.413963207384974 16.292833242960867 17.766786134659384 42.526417414994775 10-11 24.87965032467962 26.00247311970164 26.24085805350932 22.877018502109426 12-13 24.747067303241508 19.784626982132703 26.872032586989008 28.596273127636785 14-15 22.91933926705725 20.91736870643937 20.739489241268036 35.423802785235345 16-17 27.104466163225897 26.614140425588197 21.138560829486995 25.142832581698915 18-19 27.0333805033526 23.81237353365162 22.211788978085778 26.942456984910002 20-21 23.22583418195284 22.55233888352532 21.841151653816144 32.3806752807057 22-23 23.22120534828667 26.925594805126103 21.602105458056155 28.251094388531072 24-25 27.534617063203413 26.99039847645246 21.57631624191607 23.89866821842805 26-27 27.381865552219857 27.243000542234803 22.25444037400976 23.120693531535583 28-29 27.065451708039625 23.280718923994552 22.91305727851031 26.74077208945552 30-31 27.36268895560287 22.697816513033473 26.72953063626625 23.209963895097406 32-33 23.398423551505694 27.015195799664077 26.658114345416795 22.928266303413434 34-35 26.178368799016045 27.171584251385344 23.834525809054 22.815521140544615 36-37 23.31973337918083 26.50172589369553 23.064155634613094 27.114385092510545 38-39 22.370161215663973 22.97521590202743 27.231428458069377 27.423194424239217 40-41 22.081851004456908 21.812386758890668 28.171412323277746 27.934349913374685 42-43 26.441220425059182 21.14021398436777 28.298043987145068 24.12052160342798 44-45 22.43198920820494 25.25524711359158 29.025101503709678 23.287662174493803 46-47 25.199701109597555 21.54788197796675 25.96147487865843 27.29094203377726 48-49 25.1114226389642 21.144842818033936 25.239707457712296 28.504027085289568 50-51 21.33297184346607 21.64839379471784 29.43409202121328 27.58454234060281 52-53 20.04549482231891 21.703609167735706 33.67840186211365 24.572494147831723 54-55 20.112943541454513 21.84015976088768 30.075185483977624 27.97171121368019 56-57 23.944956555089732 21.508206260828164 25.99718302408316 28.549654159998944 58-59 20.167167021543914 22.01803922605901 32.62104400037031 25.19374975202677 60-61 23.397101027601074 26.430640233822228 25.6113366749104 24.5609220636663 62-63 19.83918109319826 32.02161004060148 23.285678388636875 24.853530477563382 64-65 19.651052067766127 33.047227328633966 22.266343089151334 25.035377514448577 66-67 19.728750347162524 32.84785685001256 21.919841826141006 25.503550976683904 68-69 19.655350270456136 32.92985333209898 21.968444579635776 25.446351817809106 70-71 19.96482086413712 31.623860976287144 22.346025154404668 26.06529300517107 72-73 20.93092457646172 29.351764908150713 22.83006890349543 26.887241611892136 74-75 21.55251081163292 28.676616454842417 23.045309668972266 26.725563064552393 76 21.664925343525585 29.085606972346024 22.564902860619206 26.684564823509184 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.5 10 0.5 11 1.0 12 2.0 13 1.0 14 3.0 15 13.0 16 31.0 17 42.0 18 56.0 19 108.0 20 157.5 21 169.0 22 207.0 23 319.0 24 462.5 25 532.0 26 651.5 27 885.5 28 1151.5 29 1303.0 30 1538.5 31 1883.5 32 2268.5 33 2544.0 34 2790.5 35 3175.0 36 3635.0 37 3957.0 38 4137.5 39 4722.5 40 7191.0 41 9794.0 42 10333.0 43 9710.5 44 8430.5 45 7162.0 46 6551.0 47 6268.5 48 5645.0 49 5248.5 50 5193.0 51 5011.0 52 4709.0 53 4481.5 54 4374.0 55 4278.5 56 3994.5 57 3771.5 58 3737.0 59 3612.0 60 3324.5 61 3057.0 62 2952.0 63 2899.5 64 2701.0 65 2461.5 66 2321.0 67 2274.0 68 2162.0 69 2014.0 70 1928.0 71 1878.0 72 1831.5 73 1680.5 74 1498.0 75 1420.0 76 1336.0 77 1167.0 78 957.0 79 832.0 80 725.5 81 532.5 82 378.0 83 310.0 84 277.0 85 201.0 86 125.0 87 92.0 88 66.5 89 32.5 90 19.0 91 11.5 92 9.0 93 7.0 94 3.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 151226.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.93367542618333 #Duplication Level Percentage of deduplicated Percentage of total 1 59.89479259455426 32.90241096107812 2 24.907913426583526 27.365664634388263 3 10.000722247634638 16.48129289936916 4 3.465584900209452 7.615092642799519 5 1.1086501191708598 3.045111290386574 6 0.3490863567421817 1.150595797019031 7 0.10833714519584949 0.41659502995516645 8 0.051761080482461426 0.2274741115945671 9 0.02407492115463322 0.11902715141576183 >10 0.06740977923297302 0.6030709005065267 >50 0.006018730288658305 0.21689392035761046 >100 0.01083371451958495 1.428987078941452 >500 0.002407492115463322 1.0004893338447092 >1k 0.001203746057731661 0.8126909393887294 >5k 0.0 0.0 >10k+ 0.001203746057731661 6.61460330895481 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 10003 6.61460330895481 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 1229 0.8126909393887294 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 774 0.5118167510877759 RNA PCR Primer, Index 24 (95% over 23bp) CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 739 0.4886725827569333 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 456 0.30153545025326334 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 438 0.28963273511168713 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 291 0.1924272281221483 RNA PCR Primer, Index 24 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 228 0.15076772512663167 No Hit CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 160 0.10580191236956608 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 156 0.10315686456032692 RNA PCR Primer, Index 24 (95% over 22bp) CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 154 0.10183434065570734 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 6.61261952309788E-4 0.0 3 0.0 0.0 0.0 6.61261952309788E-4 0.0 4 0.0 0.0 0.0 0.005951357570788092 0.0 5 0.0 0.0 0.0 0.007273881475407668 0.0 6 0.0 0.0 0.0 0.007273881475407668 0.0 7 0.0 0.0 0.0 0.009257667332337032 0.0 8 0.0 0.0 0.0 0.009257667332337032 0.0 9 0.0 0.0 0.0 0.01587028685543491 0.0 10 0.0 0.0 0.0 0.019176596616983854 0.0 11 0.0 0.0 0.0 0.021160382473913216 0.0 12 0.0 0.0 0.0 0.021821644426223002 0.0 13 0.0 0.0 0.0 0.02380543028315237 0.0 14 0.0 0.0 0.0 0.024466692235462155 0.0 15 0.0 0.0 0.0 0.02578921614008173 0.0 16 0.0 0.0 0.0 0.027111740044701307 0.0 17 0.0 0.0 0.0 0.027111740044701307 0.0 18 0.0 0.0 0.0 0.028434263949320884 0.0 19 0.0 0.0 0.0 0.02975678785394046 0.0 20 0.0 0.0 0.0 0.031079311758560036 0.0 21 0.0 0.0 0.0 0.03240183566317961 0.0 22 0.0 0.0 0.0 0.035708145424728555 0.0 23 0.0 0.0 0.0 0.04165950299551664 0.0 24 0.0 0.0 0.0 0.043643288852446005 0.0 25 0.0 0.0 0.0 0.05223969423247325 0.0 26 0.0 0.0 0.0 0.05686852789864177 0.0 27 0.0 0.0 0.0 0.11439831774959332 0.0 28 0.0 0.0 0.0 0.14613889146046316 0.0 29 0.0 0.0 0.0 0.19441101397907767 0.0 30 0.0 0.0 0.0 0.2327642072130454 0.0 31 0.0 0.0 0.0 0.2731011863039424 0.0 32 0.0 0.0 0.0 0.32732466639334507 0.0 33 0.0 0.0 0.0 0.3789030986735085 0.0 34 0.0 0.0 0.0 0.47809239151997673 0.0 35 0.0 0.0 0.0 0.6182799254096518 0.0 36 0.0 0.0 0.0 0.8649306336212027 0.0 37 0.0 0.0 0.0 1.2610265430547658 0.0 38 0.0 0.0 0.0 1.7305225291947153 0.0 39 0.0 0.0 0.0 2.1920833719069472 0.0 40 0.0 0.0 0.0 2.800444368031952 0.0 41 0.0 0.0 0.0 3.5443640643804635 0.0 42 0.0 0.0 0.0 4.451615462949492 0.0 43 0.0 0.0 0.0 5.39457500694325 0.0 44 0.0 0.0 0.0 6.2317326385674425 0.0 45 0.0 0.0 0.0 7.033182124766905 0.0 46 0.0 0.0 0.0 7.810164918730906 0.0 47 0.0 0.0 0.0 8.519698993559308 0.0 48 0.0 0.0 0.0 9.188896089296813 0.0 49 0.0 0.0 0.0 9.75956515414016 0.0 50 0.0 0.0 0.0 10.373877507835955 0.0 51 0.0 0.0 0.0 11.111845846613678 0.0 52 0.0 0.0 0.0 11.960244931427136 0.0 53 0.0 0.0 0.0 12.917752238371708 0.0 54 0.0 0.0 0.0 13.702670175763426 0.0 55 0.0 0.0 0.0 14.445267348207318 0.0 56 0.0 0.0 0.0 15.162736566463439 0.0 57 0.0 0.0 0.0 15.823998518773227 0.0 58 0.0 0.0 0.0 16.380119820665758 0.0 59 0.0 0.0 0.0 16.917725787893616 0.0 60 0.0 0.0 0.0 17.446735349741445 0.0 61 0.0 0.0 0.0 17.979712483303135 0.0 62 0.0 0.0 0.0 18.53186621348181 0.0 63 0.0 0.0 0.0 19.20833719069472 0.0 64 0.0 0.0 0.0 19.842487402959808 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGTCT 15 0.0022211592 70.0 23 CGAGATA 15 0.0022211592 70.0 27 GCATAAC 25 2.384379E-4 55.999996 11 CGATTCT 20 0.006940425 52.5 46 TCGAGAT 20 0.006940425 52.5 26 TCTCGTA 1605 0.0 48.84735 38 CATCTCG 1600 0.0 48.781246 36 ATCTCGT 1615 0.0 48.544895 37 TATGCCG 1675 0.0 48.268658 43 CTCGTAT 1670 0.0 48.203594 39 CGTATGC 1690 0.0 48.047337 41 TCGTATG 1695 0.0 47.90561 40 ATGCCGT 1680 0.0 47.708332 44 CCGTCTT 1670 0.0 47.574852 47 TGCTTGA 1685 0.0 47.566765 55 GTATGCC 1705 0.0 47.419357 42 TGCCGTC 1695 0.0 47.286137 45 CTTGAAA 1685 0.0 47.151337 57 CGTCTTC 1680 0.0 47.083332 48 GCCGTCT 1695 0.0 47.079647 46 >>END_MODULE