##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779730_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 62922 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.50014303423286 23.0 12.0 34.0 12.0 34.0 2 23.95780490130638 23.0 12.0 34.0 12.0 34.0 3 23.575379040717078 23.0 11.0 33.0 11.0 34.0 4 23.583373065064684 23.0 12.0 34.0 11.0 34.0 5 23.777168557897078 23.0 11.0 34.0 11.0 34.0 6 24.927958424716316 26.0 12.0 36.0 11.0 38.0 7 25.959298814405138 27.0 12.0 37.0 12.0 38.0 8 25.103318394202347 27.0 11.0 36.0 11.0 38.0 9 26.56967356409523 28.0 12.0 37.0 12.0 38.0 10-11 25.62784876513779 27.0 11.0 37.0 11.0 38.0 12-13 25.921744381933188 28.0 11.0 36.5 11.0 38.0 14-15 24.87826197514383 26.5 11.0 36.0 11.0 38.0 16-17 24.977352913130545 26.5 11.0 35.5 11.0 38.0 18-19 25.32890721846095 27.0 11.5 36.0 11.0 38.0 20-21 24.486268713645465 25.5 11.0 35.0 11.0 38.0 22-23 24.652228155494104 25.5 11.0 35.5 11.0 38.0 24-25 24.783009122405517 26.0 11.0 36.0 11.0 38.0 26-27 23.993730332792982 24.0 11.0 34.5 10.0 38.0 28-29 24.811917930135724 26.0 11.0 36.5 11.0 38.0 30-31 25.242768824894313 26.5 11.0 37.0 11.0 38.0 32-33 25.401266647595435 27.0 11.0 37.0 11.0 38.0 34-35 25.480491719907185 27.0 11.0 37.0 11.0 38.0 36-37 24.646824640030516 25.5 11.0 35.0 11.0 38.0 38-39 24.33114808810909 25.5 11.0 34.0 11.0 37.5 40-41 23.918351292075904 25.0 11.0 34.0 11.0 37.5 42-43 24.52119290550205 26.0 11.0 35.0 11.0 38.0 44-45 25.491735799879216 27.0 11.0 37.0 11.0 38.0 46-47 24.89800069927847 26.0 11.0 35.5 11.0 38.0 48-49 24.119282603858746 25.0 11.0 35.0 11.0 38.0 50-51 23.301865802104196 23.0 11.0 34.0 11.0 37.5 52-53 24.428872254537364 25.0 11.0 35.5 11.0 38.0 54-55 24.119274657512477 24.5 11.0 35.0 11.0 38.0 56-57 24.466847843361624 24.5 11.0 36.0 11.0 38.0 58-59 24.86196401894409 26.0 11.0 37.0 11.0 38.0 60-61 25.44123676933346 27.0 11.0 37.0 11.0 38.0 62-63 25.4468389434538 27.0 11.0 37.0 11.0 38.0 64-65 25.333778328724453 26.5 11.0 37.0 11.0 38.0 66-67 24.45706589110327 25.0 11.0 35.5 11.0 38.0 68-69 24.27191602301262 25.0 11.0 35.5 11.0 38.0 70-71 24.08459680239026 25.0 11.0 34.5 11.0 38.0 72-73 23.694915927656464 24.5 11.0 34.0 11.0 37.5 74-75 23.866882807285208 24.5 11.0 35.0 11.0 38.0 76 23.62326372334001 24.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 2.0 4 0.0 5 1.0 6 0.0 7 1.0 8 0.0 9 0.0 10 1.0 11 13.0 12 83.0 13 404.0 14 1086.0 15 1814.0 16 2974.0 17 4584.0 18 5845.0 19 6070.0 20 5141.0 21 3938.0 22 2647.0 23 1978.0 24 1492.0 25 1282.0 26 1127.0 27 1095.0 28 1149.0 29 1226.0 30 1411.0 31 1614.0 32 2061.0 33 2496.0 34 2956.0 35 3440.0 36 3445.0 37 1546.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.14243031054321 14.840596293824099 16.477543625441022 39.53942977019167 2 16.66030958965068 12.251676679062967 47.70509519722832 23.38291853405804 3 15.285591684943265 12.240551794284988 48.02453831728171 24.449318203490037 4 14.4687072883888 22.128985092654396 24.077429198054734 39.324878420902074 5 16.083404850449764 19.581386478497187 42.75452147102762 21.580687200025427 6 23.309812148374178 33.78627507072248 14.56406344362862 28.33984933727472 7 22.40746332702913 19.437071883790786 16.050285278364935 42.10517951081515 8 19.232664219075318 33.61782609386672 15.149636834660438 31.999872852397527 9 18.07749769541308 15.175307543151403 16.084427349883974 50.66276741155155 10-11 21.40563908579421 21.320607775199466 26.8508217044407 30.422931434565626 12-13 19.36693872036747 14.37460761485461 32.593993626473186 33.66446003830474 14-15 25.191118739967262 20.218852810756687 20.755256758689743 33.83477169058631 16-17 30.151704188752117 15.596366728386723 20.497945755223025 33.75398332763814 18-19 19.925935344416544 14.980609682443816 28.94243300804221 36.15102196509743 20-21 30.24364659323893 14.575883278500928 21.993356537770783 33.18711359048936 22-23 32.2763936901498 13.308697898041085 20.78436047204673 33.63054793976239 24-25 20.87684165355457 21.876539677998696 18.738377914461452 38.508240753985284 26-27 28.58630006357279 20.917832167832167 20.91942148760331 29.576446280991735 28-29 22.737964684753415 19.675296810184523 22.05851968403821 35.528218821023856 30-31 21.77454603250288 19.931656534350537 23.81849247029841 34.47530496284818 32-33 23.316671567186123 18.135365591995996 24.17095131002805 34.37701153078983 34-35 22.344162242919356 18.435106010998442 23.78731046759274 35.43342127848946 36-37 29.220572809053053 13.255348231030867 29.49394449918942 28.030134460726657 38-39 28.753526443358368 11.01442365001788 35.91846465609727 24.313585250526483 40-41 24.606031708189295 22.402352286724682 22.296658322406326 30.694957682679703 42-43 17.709277006945438 23.16708784309986 26.68033503393252 32.443300116022186 44-45 18.28902928438034 15.41224619541463 31.271108991933882 35.02761552827115 46-47 27.87437617216059 14.781938396007503 25.680250484757938 31.66343494707397 48-49 26.646587621984168 15.317556184239804 29.466130519088335 28.56972567468769 50-51 38.50328999650338 12.846880066117805 24.232334149210082 24.41749578816873 52-53 17.66374747683456 18.494206653209787 29.772557496384128 34.06948837357153 54-55 26.433612002924438 15.87780921199021 24.593915890524173 33.094662894561175 56-57 26.104612352585903 16.948250103309068 23.4002988016148 33.54683874249022 58-59 18.325585091588188 19.918146779512856 27.958834982318116 33.79743314658084 60-61 17.91075614892518 17.665196487463742 27.849962252155603 36.57408511145548 62-63 18.01088727301625 19.953113203798626 27.230897604005243 34.805101919179876 64-65 18.122506714982755 21.719989192453788 26.367234062842705 33.79027002972075 66-67 15.86747830509552 32.06634031596681 18.02186973521091 34.04431164372676 68-69 16.595920573599784 29.98839446113734 18.6054275766681 34.81025738859478 70-71 15.668261360204713 31.501819857908036 17.183750019867443 35.646168762019805 72-73 14.672949927286888 35.75180590764243 15.648020852372513 33.927223312698175 74-75 17.44067769672118 25.12198223112255 20.041640839809915 37.39569923234635 76 17.486251946978605 22.799516831431387 21.709208811468898 38.00502241012111 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 1.0 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 2.0 15 1.5 16 2.0 17 3.0 18 2.5 19 4.0 20 6.0 21 6.0 22 8.0 23 18.5 24 33.0 25 39.0 26 57.5 27 95.0 28 140.0 29 166.0 30 205.0 31 291.5 32 402.5 33 466.0 34 509.5 35 657.0 36 878.5 37 996.0 38 1071.0 39 1268.5 40 1475.5 41 1729.5 42 1899.0 43 1940.0 44 2123.5 45 2315.5 46 2365.0 47 2427.0 48 2442.0 49 2403.0 50 2411.0 51 2389.0 52 2329.0 53 2253.5 54 2216.0 55 2200.5 56 2097.5 57 2064.5 58 2119.0 59 2111.0 60 2123.0 61 2144.0 62 2145.0 63 2143.5 64 2133.0 65 2089.0 66 1959.0 67 1864.0 68 1878.0 69 1790.5 70 1632.0 71 1575.0 72 1450.0 73 1226.5 74 1063.0 75 998.0 76 923.0 77 735.5 78 558.0 79 493.0 80 422.5 81 285.0 82 178.5 83 139.0 84 112.0 85 60.0 86 28.5 87 22.0 88 16.0 89 6.0 90 3.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0015892692539970124 8 0.004767807761991036 9 0.0063570770159880495 10-11 0.0063570770159880495 12-13 0.008740980896983568 14-15 0.004767807761991036 16-17 0.005562442388989543 18-19 0.0063570770159880495 20-21 0.004767807761991036 22-23 0.0071517116429865545 24-25 0.004767807761991036 26-27 0.0031785385079940247 28-29 0.004767807761991036 30-31 0.0071517116429865545 32-33 0.005562442388989543 34-35 0.0063570770159880495 36-37 0.0063570770159880495 38-39 0.0071517116429865545 40-41 0.0071517116429865545 42-43 0.004767807761991036 44-45 0.0071517116429865545 46-47 0.0063570770159880495 48-49 0.0063570770159880495 50-51 0.0063570770159880495 52-53 0.00794634626998506 54-55 0.0063570770159880495 56-57 0.0063570770159880495 58-59 0.0071517116429865545 60-61 0.0071517116429865545 62-63 0.0071517116429865545 64-65 0.004767807761991036 66-67 0.0063570770159880495 68-69 0.033374654333937256 70-71 0.00794634626998506 72-73 0.005562442388989543 74-75 0.004767807761991036 76 0.0063570770159880495 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 62922.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.08458090969772 #Duplication Level Percentage of deduplicated Percentage of total 1 99.21887530876079 98.31060678300118 2 0.6720559458505758 1.3318076348494963 3 0.0866134154556828 0.257461619147516 4 0.016039521380682 0.06357077015988048 5 0.0032079042761364 0.01589269253997012 6 0.0016039521380682 0.009535615523982072 7 0.0016039521380682 0.011124884777979085 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0031785385079940243 0.0 6 0.0 0.0 0.0 0.0031785385079940243 0.0 7 0.0 0.0 0.0 0.0031785385079940243 0.0 8 0.0 0.0 0.0 0.0031785385079940243 0.0 9 0.0 0.0 0.0 0.006357077015988049 0.0 10 0.0 0.0 0.0 0.006357077015988049 0.0 11 0.0 0.0 0.0 0.006357077015988049 0.0 12 0.0 0.0 0.0 0.00794634626998506 0.0 13 0.0 0.0 0.0 0.01589269253997012 0.0 14 0.0 0.0 0.0 0.019071231047964148 0.0 15 0.0 0.0 0.0 0.02066050030196116 0.0 16 0.0 0.0 0.0 0.02066050030196116 0.0 17 0.0 0.0 0.0 0.02066050030196116 0.0 18 0.0 0.0 0.0 0.02066050030196116 0.0 19 0.0 0.0 0.0 0.025428308063952194 0.0 20 0.0 0.0 0.0 0.028606846571946218 0.0 21 0.0 0.0 0.0 0.033374654333937256 0.0 22 0.0 0.0 0.0 0.04608880836591335 0.0 23 0.0 0.0 0.0 0.04926734687390738 0.0 24 0.0 0.0 0.0 0.0651600394138775 0.0 25 0.0 0.0 0.0 0.06674930866787451 0.0 26 0.0 0.0 0.0 0.06833857792187152 0.0 27 0.0 0.0 0.0 0.1160166555417819 0.0 28 0.0 0.0 0.0 0.17323034868567433 0.0 29 0.0 0.0 0.0 0.21455134928959665 0.0 30 0.0 0.0 0.0 0.255872349893519 0.0 31 0.0 0.0 0.0 0.29242554273545024 0.0 32 0.0 0.0 0.0 0.36235338991131877 0.0 33 0.0 0.0 0.0 0.4322812370871873 0.0 34 0.0 0.0 0.0 0.5498871618829662 0.0 35 0.0 0.0 0.0 0.7405994723626077 0.0 36 0.0 0.0 0.0 0.912240551794285 0.0 37 0.0 0.0 0.0 1.293665172753568 0.0 38 0.0 0.0 0.0 1.6099297542989732 0.0 39 0.0 0.0 0.0 2.0183719525762056 0.0 40 0.0 0.0 0.0 2.3950287657734974 0.0 41 0.0 0.0 0.0 2.7939353485267473 0.0 42 0.0 0.0 0.0 3.1006643145481707 0.0 43 0.0 0.0 0.0 3.4391786656495342 0.0 44 0.0 0.0 0.0 3.8110676710848352 0.0 45 0.0 0.0 0.0 4.057404405454372 0.0 46 0.0 0.0 0.0 4.341883601919838 0.0 47 0.0 0.0 0.0 4.672451606751216 0.0 48 0.0 0.0 0.0 4.8647531864848546 0.0 49 0.0 0.0 0.0 5.044340612186517 0.0 50 0.0 0.0 0.0 5.365373001493913 0.0 51 0.0 0.0 0.0 5.64349512094339 0.0 52 0.0 0.0 0.0 5.896188932328915 0.0 53 0.0 0.0 0.0 6.212453513874321 0.0 54 0.0 0.0 0.0 6.461968786751852 0.0 55 0.0 0.0 0.0 6.682877213057436 0.0 56 0.0 0.0 0.0 6.919678331902991 0.0 57 0.0 0.0 0.0 7.092908680588665 0.0 58 0.0 0.0 0.0 7.245478528972378 0.0 59 0.0 0.0 0.0 7.410762531388068 0.0 60 0.0 0.0 0.0 7.539493340961826 0.0 61 0.0 0.0 0.0 7.676170496805569 0.0 62 0.0 0.0 0.0 7.747687613235434 0.0 63 0.0 0.0 0.0 7.844633037729252 0.0 64 0.0 0.0 0.0 7.930453577445091 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTGT 15 0.0022151133 70.0 33 TCCATAT 20 7.8705874E-5 70.0 23 CCGATGA 15 0.0022151133 70.0 21 TAGGTTG 15 0.0022151133 70.0 48 TAGAACG 15 0.0022151133 70.0 26 GTAGGTT 20 7.8705874E-5 70.0 47 TGAGTAT 20 7.8705874E-5 70.0 35 AGAACGG 20 7.8705874E-5 70.0 27 TATTGTG 15 0.0022151133 70.0 32 TCGTGTA 30 1.0086114E-7 70.0 34 TATTCCA 20 7.8705874E-5 70.0 20 GAAACTC 15 0.0022151133 70.0 26 TTGGTGT 20 7.8705874E-5 70.0 45 GATATCG 20 7.8705874E-5 70.0 41 GTGTACT 15 0.0022151133 70.0 36 TTCGGTG 30 1.0086114E-7 70.0 44 TAGATAT 15 0.0022151133 70.0 39 GCTAACA 15 0.0022151133 70.0 63 TGTGTAC 20 7.8705874E-5 70.0 35 CCTGAAA 15 0.0022151133 70.0 62 >>END_MODULE