##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779730_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 62922 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.67807761991037 34.0 34.0 34.0 34.0 34.0 2 33.66847843361622 34.0 34.0 34.0 34.0 34.0 3 33.68389434538 34.0 34.0 34.0 34.0 34.0 4 33.71494866660309 34.0 34.0 34.0 34.0 34.0 5 33.73891484695337 34.0 34.0 34.0 34.0 34.0 6 37.43056482629287 38.0 38.0 38.0 37.0 38.0 7 37.42595594545628 38.0 38.0 38.0 37.0 38.0 8 37.32788213979212 38.0 38.0 38.0 36.0 38.0 9 37.354550077874194 38.0 38.0 38.0 37.0 38.0 10-11 37.235426400940845 38.0 38.0 38.0 36.0 38.0 12-13 37.2342741807317 38.0 38.0 38.0 36.0 38.0 14-15 37.24880010171323 38.0 38.0 38.0 36.0 38.0 16-17 37.09159753345412 38.0 38.0 38.0 35.5 38.0 18-19 37.067353230984395 38.0 38.0 38.0 35.0 38.0 20-21 37.16426687009313 38.0 38.0 38.0 36.0 38.0 22-23 37.14412288229872 38.0 38.0 38.0 36.0 38.0 24-25 37.052199548647536 38.0 38.0 38.0 35.0 38.0 26-27 36.867852261530146 38.0 38.0 38.0 34.5 38.0 28-29 36.88901338164712 38.0 37.5 38.0 34.5 38.0 30-31 36.87950955150822 38.0 37.5 38.0 35.0 38.0 32-33 36.617717173643555 38.0 37.0 38.0 34.0 38.0 34-35 36.295246495661296 38.0 37.0 38.0 33.5 38.0 36-37 36.111574647976866 38.0 37.0 38.0 32.0 38.0 38-39 34.7383506563682 37.0 34.5 38.0 27.0 38.0 40-41 36.16699246686373 38.0 36.5 38.0 33.0 38.0 42-43 36.811647754362546 38.0 37.0 38.0 34.5 38.0 44-45 36.81834652426814 38.0 37.0 38.0 34.5 38.0 46-47 36.836027144718855 38.0 37.0 38.0 35.0 38.0 48-49 36.776826865007465 38.0 37.0 38.0 34.5 38.0 50-51 36.598558532786626 38.0 37.0 38.0 34.0 38.0 52-53 36.61096277931407 38.0 37.0 38.0 34.0 38.0 54-55 36.608491465624105 38.0 37.0 38.0 34.0 38.0 56-57 36.583500206605 38.0 37.0 38.0 34.0 38.0 58-59 36.39440895076444 38.0 37.0 38.0 34.0 38.0 60-61 36.37757858936461 38.0 37.0 38.0 34.0 38.0 62-63 36.511363275166076 38.0 37.0 38.0 34.0 38.0 64-65 36.57355932742125 38.0 37.0 38.0 34.0 38.0 66-67 36.36717682209719 38.0 37.0 38.0 34.0 38.0 68-69 35.84080289882712 38.0 37.0 38.0 31.0 38.0 70-71 32.11069260354089 36.0 29.0 38.0 18.5 38.0 72-73 25.85527319538476 24.0 15.0 38.0 10.0 38.0 74-75 25.043236070054988 24.5 11.0 38.0 11.0 38.0 76 24.94248434569785 25.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 0.0 20 2.0 21 1.0 22 4.0 23 12.0 24 25.0 25 67.0 26 108.0 27 180.0 28 345.0 29 596.0 30 949.0 31 1437.0 32 2161.0 33 3438.0 34 6434.0 35 16369.0 36 14734.0 37 16059.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.93738279139252 6.89901783160103 11.623915323734145 61.5396840532723 2 11.350561012046661 6.825911445917167 61.244079972028864 20.57944757000731 3 11.603254823432184 8.844283398493372 60.59247957789009 18.959982200184356 4 9.325831982454467 48.499729824226826 21.706239471091195 20.46819872222752 5 10.514605384444232 20.65891103270716 57.35990591526017 11.466577667588442 6 17.911064492546327 56.876768062045066 11.36168589682464 13.850481548583963 7 15.651123613362575 18.48955850100124 10.451034614284351 55.408283271351834 8 13.952194780839768 58.27850354407044 7.545850417977813 20.22345125711198 9 11.700200247926004 13.774196624392104 5.614888274371444 68.91071485331045 10-11 15.162423317758494 33.8848097644703 30.044340612186517 20.908426305584694 12-13 14.841390928451098 7.951908712374051 35.23648326499475 41.97021709418009 14-15 15.539080130955787 6.475477575410826 11.783636883760847 66.20180540987253 16-17 40.48822351482788 28.95410190394457 5.686405390801309 24.871269190426244 18-19 42.021868344935 12.826197514382887 5.548933600330568 39.603000540351545 20-21 17.43110517783923 7.427449858555037 5.836591335304027 69.30485362830171 22-23 16.60150662725279 32.27011220240934 5.591843870188487 45.53653730014939 24-25 40.69800705635549 32.40520008899908 5.488541368678682 21.408251485966755 26-27 41.51727535679095 35.04100314675313 8.035345348208892 15.406376148247036 28-29 16.78586186071644 12.26598010234894 31.20212326372334 39.74603477321128 30-31 15.020183719525763 5.8604303741139825 60.52255173071421 18.596834175646038 32-33 36.29732049203776 7.098471122977655 16.7024252248816 39.90178316010298 34-35 19.787991481516798 8.517688566796986 32.27011220240934 39.42420774927689 36-37 13.932328915164808 53.15708337306506 11.495979148787388 21.41460856298274 38-39 14.219986650138267 14.58472394393058 33.013890213279936 38.18139919265121 40-41 14.370967229267983 6.6955913670894125 36.00648421855631 42.926957185086295 42-43 38.18378309653222 6.988016909824863 34.58329360160198 20.24490639204094 44-45 15.932424271320048 30.819109373510063 37.4495407011856 15.798925653984297 46-47 37.81189409109692 8.889577572232287 15.48901814945488 37.80951018721591 48-49 37.32716696862782 6.4023711897269635 10.529703442357203 45.740758399288005 50-51 17.012332729411018 6.928419312799974 35.73710308000381 40.32214487778519 52-53 11.915546231842598 6.844188042338133 59.82406789358253 21.41619783223674 54-55 12.563968087473379 6.567655192142653 40.74568513397539 40.12269158640857 56-57 36.56034455357427 6.61136009662757 16.818441880423382 40.009853469374775 58-59 15.329296589428182 8.957916150154158 55.219160230126185 20.49362703029147 60-61 36.04383204602524 33.20857569689456 15.774291980547344 14.97330027653285 62-63 13.709831219605226 64.2056832268523 7.265344394647341 14.81914115889514 64-65 11.12250087409809 67.45812275515718 6.6304313276755344 14.788945043069196 66-67 11.391087378023585 67.64645116175583 6.5390483455707065 14.423413114649883 68-69 11.096277931407139 67.15059915450877 7.076221353421697 14.676901560662408 70-71 11.476907917739423 61.90918915482661 9.34490321350243 17.268999713931535 72-73 13.006579574711546 48.242268205079306 14.08489876354852 24.666253456660627 74-75 14.112710975493467 41.90505705476622 17.092590826737865 26.889641143002446 76 13.772607355138108 42.93728743523727 16.752487206382504 26.53761800324211 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.0 17 2.0 18 1.5 19 0.5 20 0.0 21 0.0 22 0.0 23 2.5 24 8.5 25 12.0 26 14.0 27 16.0 28 14.0 29 12.0 30 15.5 31 18.0 32 23.5 33 30.0 34 27.5 35 27.5 36 46.5 37 63.0 38 231.5 39 5190.5 40 10901.5 41 10165.5 42 8509.0 43 6627.5 44 3427.5 45 1432.5 46 756.0 47 537.0 48 259.0 49 163.5 50 127.0 51 165.5 52 222.0 53 248.0 54 256.0 55 360.5 56 556.5 57 730.0 58 812.0 59 917.0 60 1045.5 61 1137.5 62 1206.0 63 1252.5 64 1343.0 65 1377.0 66 1383.5 67 1400.0 68 1439.5 69 1479.5 70 1466.5 71 1453.0 72 1438.5 73 1344.0 74 1243.5 75 1223.0 76 1104.5 77 882.5 78 744.0 79 709.0 80 644.5 81 479.0 82 316.0 83 254.0 84 197.5 85 112.0 86 69.5 87 56.0 88 41.5 89 18.0 90 7.0 91 3.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 62922.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.525952766917772 #Duplication Level Percentage of deduplicated Percentage of total 1 55.02938593528339 12.946187343059663 2 25.035465783962714 11.779663710625854 3 11.45713706681078 8.086201964336798 4 4.931432817672094 4.6406662216712755 5 1.8847530905897452 2.217030609325832 6 0.695804904411268 0.9821683989701535 7 0.2634601094372762 0.43387050634118435 8 0.12159697358643518 0.22885477257556974 9 0.054043099371748976 0.11442738628778487 >10 0.3783016956022428 1.8133562188105907 >50 0.04728771195028035 0.9535615523982074 >100 0.06079848679321759 3.5679094752232925 >500 0.013510774842937244 2.450653189663393 >1k 0.020266162264405863 9.664346333555832 >5k 0.0 0.0 >10k+ 0.006755387421468622 40.12110231715457 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 25245 40.12110231715457 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 3122 4.961698610978672 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 1880 2.987826197514383 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 1079 1.7148215250627763 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 830 1.31909348081752 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 712 1.1315597088458726 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 428 0.6802072407107211 RNA PCR Primer, Index 48 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 343 0.5451193541209751 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 280 0.44499539111916336 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 269 0.42751342932519626 No Hit TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 255 0.4052636597692381 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 213 0.33851435110136363 No Hit TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT 180 0.28606846571946215 RNA PCR Primer, Index 48 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC 145 0.23044404182956676 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCG 132 0.2097835415276056 No Hit CCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 100 0.1589269253997012 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAACTCGTATGCCGT 96 0.15256984838371315 No Hit TCTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 94 0.14939130987571914 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAAGCTCGTATGCCGT 93 0.14780204062172214 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 90 0.14303423285973108 No Hit CTTATTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 69 0.10965957852579385 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0031785385079940243 0.0 2 0.0 0.0 0.0 0.0031785385079940243 0.0 3 0.0 0.0 0.0 0.0031785385079940243 0.0 4 0.0 0.0 0.0 0.004767807761991037 0.0 5 0.0 0.0 0.0 0.00794634626998506 0.0 6 0.0 0.0 0.0 0.00794634626998506 0.0 7 0.0 0.0 0.0 0.00794634626998506 0.0 8 0.0 0.0 0.0 0.00794634626998506 0.0 9 0.0 0.0 0.0 0.011124884777979085 0.0 10 0.0 0.0 0.0 0.011124884777979085 0.0 11 0.0 0.0 0.0 0.011124884777979085 0.0 12 0.0 0.0 0.0 0.01589269253997012 0.0 13 0.0 0.0 0.0 0.034963923587934265 0.0 14 0.0 0.0 0.0 0.04291026985791933 0.0 15 0.0 0.0 0.0 0.04449953911191634 0.0 16 0.0 0.0 0.0 0.047678077619910365 0.0 17 0.0 0.0 0.0 0.047678077619910365 0.0 18 0.0 0.0 0.0 0.052445885381901404 0.0 19 0.0 0.0 0.0 0.057213693143892436 0.0 20 0.0 0.0 0.0 0.0651600394138775 0.0 21 0.0 0.0 0.0 0.06992784717586853 0.0 22 0.0 0.0 0.0 0.07469565493785957 0.0 23 0.0 0.0 0.0 0.07628492419185659 0.0 24 0.0 0.0 0.0 0.0794634626998506 0.0 25 0.0 0.0 0.0 0.08899907822383268 0.0 26 0.0 0.0 0.0 0.09535615523982073 0.0 27 0.0 0.0 0.0 0.16687327166968627 0.0 28 0.0 0.0 0.0 0.23362258033756078 0.0 29 0.0 0.0 0.0 0.33374654333937254 0.0 30 0.0 0.0 0.0 0.39572804424525604 0.0 31 0.0 0.0 0.0 0.4958520072470678 0.0 32 0.0 0.0 0.0 0.6071008550268586 0.0 33 0.0 0.0 0.0 0.7628492419185658 0.0 34 0.0 0.0 0.0 1.0155430533040908 0.0 35 0.0 0.0 0.0 1.3238612885795111 0.0 36 0.0 0.0 0.0 1.830838180604558 0.0 37 0.0 0.0 0.0 2.495152728775309 0.0 38 0.0 0.0 0.0 3.0418613521502813 0.0 39 0.0 0.0 0.0 3.677569053749086 0.0 40 0.0 0.0 0.0 4.267187946981978 0.0 41 0.0 0.0 0.0 4.848860493944884 0.0 42 0.0 0.0 0.0 5.2970344235720415 0.0 43 0.0 0.0 0.0 5.783350815295127 0.0 44 0.0 0.0 0.0 6.333237977178094 0.0 45 0.0 0.0 0.0 6.873589523537078 0.0 46 0.0 0.0 0.0 7.391691300340104 0.0 47 0.0 0.0 0.0 7.881186230571183 0.0 48 0.0 0.0 0.0 8.243539620482503 0.0 49 0.0 0.0 0.0 8.60112520263183 0.0 50 0.0 0.0 0.0 8.99526397762309 0.0 51 0.0 0.0 0.0 9.329010520962461 0.0 52 0.0 0.0 0.0 9.705667334159754 0.0 53 0.0 0.0 0.0 10.050538762277105 0.0 54 0.0 0.0 0.0 10.347732112774546 0.0 55 0.0 0.0 0.0 10.703728425669876 0.0 56 0.0 0.0 0.0 11.029528622739264 0.0 57 0.0 0.0 0.0 11.306061472934745 0.0 58 0.0 0.0 0.0 11.576237246114237 0.0 59 0.0 0.0 0.0 11.822573980483774 0.0 60 0.0 0.0 0.0 12.0752677918693 0.0 61 0.0 0.0 0.0 12.401067988938687 0.0 62 0.0 0.0 0.0 12.615619338228283 0.0 63 0.0 0.0 0.0 12.841295572295857 0.0 64 0.0 0.0 0.0 13.070150344871427 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACCGA 15 0.0022151133 70.0 68 CCGTGAA 15 0.0022151133 70.0 36 CTTTACA 55 0.0 70.0 1 TTACACA 55 0.0 70.0 3 ACCAAAA 15 0.0022151133 70.0 70 AACTCCC 15 0.0022151133 70.0 70 AACCACA 20 7.8705874E-5 70.0 70 CTGAAAA 15 0.0022151133 70.0 58 AAAACCG 15 0.0022151133 70.0 67 AATATCC 20 7.8705874E-5 70.0 70 ATCGTAT 15 0.0022151133 70.0 39 TTTACAC 55 0.0 70.0 2 TCTTAAT 40 1.3096724E-10 70.0 1 TCTTTAT 115 0.0 66.95653 1 ACAAAAC 25 2.373642E-4 56.000004 70 AACCAAA 25 2.373642E-4 56.000004 69 CCTCTGC 25 2.373642E-4 56.000004 51 CATGATG 20 0.0069216774 52.5 25 ACTCGTA 20 0.0069216774 52.5 39 AAACTCT 20 0.0069216774 52.5 68 >>END_MODULE