##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779729_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 138658 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.995528566689263 34.0 23.0 34.0 12.0 34.0 2 27.540769375009013 33.0 23.0 34.0 12.0 34.0 3 26.53765379566992 32.0 21.0 34.0 11.0 34.0 4 28.776861053815864 33.0 23.0 34.0 12.0 34.0 5 28.37748272728584 34.0 23.0 34.0 11.0 34.0 6 30.639047151985462 36.0 26.0 38.0 11.0 38.0 7 31.584755297206076 37.0 27.0 38.0 12.0 38.0 8 30.829854750537294 36.0 26.0 38.0 11.0 38.0 9 32.28222677378874 37.0 31.0 38.0 12.0 38.0 10-11 31.980405025314084 37.0 31.0 38.0 11.0 38.0 12-13 31.026421122474 35.5 27.0 38.0 11.0 38.0 14-15 31.029392462028877 36.5 26.5 38.0 11.0 38.0 16-17 30.68471346766865 35.5 26.5 38.0 11.0 38.0 18-19 31.239243318091994 36.0 26.5 38.0 11.5 38.0 20-21 30.11619596417084 35.0 24.0 38.0 11.0 38.0 22-23 30.16378788097333 35.5 26.0 38.0 11.0 38.0 24-25 31.323017784765394 36.5 28.5 38.0 11.0 38.0 26-27 29.905786178943877 35.0 24.0 38.0 11.0 38.0 28-29 31.98349896868554 37.0 30.0 38.0 11.0 38.0 30-31 32.46635967632592 37.0 31.0 38.0 11.0 38.0 32-33 32.562084409121724 37.0 31.0 38.0 11.0 38.0 34-35 32.6132498665782 37.0 32.0 38.0 11.0 38.0 36-37 30.52855226528581 36.0 25.0 38.0 11.0 38.0 38-39 28.767398923971207 34.0 22.0 37.5 11.0 38.0 40-41 29.91674119055518 35.0 24.5 37.5 11.0 38.0 42-43 30.960103275685498 36.0 27.5 38.0 11.0 38.0 44-45 32.66498507118233 37.0 32.0 38.0 11.0 38.0 46-47 31.216092832725124 36.0 28.5 38.0 11.0 38.0 48-49 30.65585469284138 35.5 25.0 38.0 11.0 38.0 50-51 28.448026799751908 34.0 21.0 37.5 11.0 38.0 52-53 31.791656449681952 36.5 29.0 38.0 11.0 38.0 54-55 30.818301143821486 36.0 27.0 38.0 11.0 38.0 56-57 31.288447114483116 36.5 27.5 38.0 11.0 38.0 58-59 32.398090986455884 37.0 31.5 38.0 11.0 38.0 60-61 32.903362950569026 37.5 34.0 38.0 11.0 38.0 62-63 32.76198993206306 37.5 33.0 38.0 11.0 38.0 64-65 32.47150182463327 37.5 32.0 38.0 11.0 38.0 66-67 30.371871799679788 36.0 24.5 38.0 11.0 38.0 68-69 30.460326847351034 36.0 25.0 38.0 11.0 38.0 70-71 30.085498132094795 35.0 24.0 38.0 11.0 38.0 72-73 28.92698582122921 34.0 22.5 37.5 11.0 38.0 74-75 30.984548313115724 35.5 26.5 38.0 11.0 38.0 76 31.37246318279508 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 1.0 4 1.0 5 0.0 6 1.0 7 0.0 8 0.0 9 1.0 10 0.0 11 6.0 12 37.0 13 237.0 14 607.0 15 1067.0 16 1724.0 17 2835.0 18 3668.0 19 4099.0 20 3555.0 21 2966.0 22 2505.0 23 2307.0 24 2373.0 25 2524.0 26 2720.0 27 3127.0 28 3824.0 29 4546.0 30 5424.0 31 6821.0 32 8381.0 33 10947.0 34 14344.0 35 18035.0 36 19697.0 37 10278.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.43545990855198 19.499776428334464 10.737930736055619 29.32683292705794 2 21.163582339280822 17.16958271430426 37.914869679354965 23.75196526705996 3 20.66234908912576 17.548933346795714 36.425593907311516 25.363123656767012 4 14.521445004579647 19.14652704154857 33.2201042861161 33.11192366775568 5 14.692264420372428 28.497454167808566 39.15893781822902 17.65134359358998 6 27.1791025400626 32.99917783322996 17.37079721328737 22.45092241342007 7 27.474072898786943 25.766273853654315 21.1433887694904 25.61626447806834 8 23.642854567090982 31.181709999639395 18.365006671234358 26.810428762035265 9 23.411175859681514 16.073592199399954 20.006346642049387 40.508885298869146 10-11 24.476210395736118 23.420697712995754 27.24895963304076 24.854132258227374 12-13 24.14544169458398 19.68107548673492 29.479962640683432 26.69352017799767 14-15 23.885543254841153 22.32627745122787 23.866070462659117 29.92210883127186 16-17 25.13027266203395 22.97883542550928 26.037583437611566 25.853308474845203 18-19 21.972680196748744 23.129516638539098 27.94329770507883 26.95450545963333 20-21 24.552666690707152 22.632072409938335 27.2849879196567 25.53027297969781 22-23 25.18562325780988 21.652019948865707 27.70952259032343 25.452834203000986 24-25 22.400761597045925 24.952400184629585 24.425196168936072 28.22164204938841 26-27 23.5659602395866 23.85408440343153 27.27443195545795 25.30552340152392 28-29 23.049933107594 24.66328418274068 26.63796243207085 25.64882027759447 30-31 22.63888989059018 24.633798042595544 26.7026317497638 26.024680317050482 32-33 22.779560780354117 24.56348490858606 26.512567163102663 26.14438714795716 34-35 23.010627057707772 24.41410546281972 26.613441226637242 25.961826252835262 36-37 24.499105674638663 21.940902403138793 30.164007731586995 23.39598419063555 38-39 24.243167319973892 20.788151759602176 33.248709913561505 21.71997100686243 40-41 23.34721696327149 23.279782189286166 26.04568976397829 27.327311083464057 42-43 21.08787606694289 23.86418137037478 27.38081071432435 27.66713184835798 44-45 20.924747933705483 22.73428822825162 29.356888369610683 26.984075468432213 46-47 23.350402077097833 21.503011070642962 29.586383469763085 25.560203382496123 48-49 22.934509406542208 22.1332314005777 30.363459991994436 24.56879920088566 50-51 25.392251964415145 20.759153146850625 31.36789646206939 22.480698426664837 52-53 19.913020273632736 23.74633076817667 29.334381513562636 27.00626744462796 54-55 22.173779773173944 22.42224265700222 28.888047456771424 26.515930113052416 56-57 21.824672748909162 22.982943276477588 28.47174642097292 26.72063755364033 58-59 19.86260615567696 24.04428337029624 28.778420872324695 27.314689601702096 60-61 19.7553613864778 23.214704280815127 28.63252640575247 28.397407926954603 62-63 19.6728523724694 24.015347666476742 28.53129755576872 27.780502405285134 64-65 20.190040027406152 24.319353791785367 27.30373949731348 28.186866683495005 66-67 19.10500939419183 25.323928322857274 23.774698069592752 31.796364213358142 68-69 19.381273737858297 25.460690287000396 23.9897997092845 31.168236265856798 70-71 19.21746813075855 25.43192513658246 23.07531418474243 32.27529254791656 72-73 18.777023299087293 25.502421503964918 21.871788306822403 33.84876689012539 74-75 20.215647031247183 25.291646382142407 23.763365247651503 30.72934133895891 76 20.374751175605113 24.51316966217581 24.20231947609843 30.909759686120648 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.5 10 0.5 11 0.5 12 1.0 13 0.5 14 0.5 15 0.5 16 1.5 17 3.0 18 4.0 19 9.5 20 19.0 21 24.0 22 32.5 23 57.5 24 97.0 25 120.0 26 176.5 27 272.5 28 420.0 29 528.0 30 596.0 31 848.0 32 1283.0 33 1534.0 34 1803.0 35 2439.0 36 3157.0 37 3508.0 38 4053.0 39 5102.5 40 5958.5 41 6868.0 42 7426.0 43 7812.5 44 8330.0 45 8598.0 46 8735.0 47 8570.5 48 8255.0 49 7759.0 50 7414.0 51 7002.0 52 6172.0 53 5331.0 54 4908.0 55 4529.0 56 3764.5 57 3126.5 58 2874.0 59 2721.0 60 2420.5 61 2193.5 62 2114.0 63 2059.5 64 1895.5 65 1812.0 66 1772.0 67 1706.0 68 1663.5 69 1544.0 70 1444.0 71 1421.0 72 1363.5 73 1208.0 74 1037.0 75 964.0 76 844.5 77 669.5 78 526.5 79 439.0 80 370.5 81 257.5 82 172.5 83 132.0 84 98.0 85 56.5 86 34.5 87 20.0 88 12.5 89 6.5 90 7.5 91 4.5 92 2.0 93 2.0 94 1.0 95 1.5 96 3.0 97 2.0 98 1.5 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 7.211989210864141E-4 5 0.0 6 0.0 7 0.0 8 0.002163596763259242 9 0.0014423978421728282 10-11 0.00360599460543207 12-13 0.003245395144888863 14-15 0.002163596763259242 16-17 0.004687792987061692 18-19 0.0028847956843456564 20-21 0.002163596763259242 22-23 0.002524196223802449 24-25 0.0014423978421728282 26-27 0.001802997302716035 28-29 0.001802997302716035 30-31 0.00360599460543207 32-33 0.002163596763259242 34-35 0.001802997302716035 36-37 0.004327193526518484 38-39 0.003245395144888863 40-41 0.003966594065975278 42-43 0.001802997302716035 44-45 0.0028847956843456564 46-47 0.002163596763259242 48-49 0.003245395144888863 50-51 0.002524196223802449 52-53 0.00360599460543207 54-55 0.003966594065975278 56-57 0.002163596763259242 58-59 0.003966594065975278 60-61 0.003245395144888863 62-63 0.00360599460543207 64-65 0.002163596763259242 66-67 0.00613019082923452 68-69 0.024881362777481285 70-71 0.003966594065975278 72-73 0.003245395144888863 74-75 0.003966594065975278 76 0.004327193526518484 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 138658.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.16774444900696 #Duplication Level Percentage of deduplicated Percentage of total 1 95.3903457364524 88.8730335447622 2 3.2087703711803903 5.979077958753596 3 0.7817938668968701 2.185139136085457 4 0.31658447855911076 1.1798184717966942 5 0.14183486394397993 0.6607217178946196 6 0.06886763476251095 0.3849745317816701 7 0.03891777673462464 0.2538117034134512 8 0.020954722185382177 0.15618433612540988 9 0.01197398261311808 0.10040300569222542 >10 0.019956566671626794 0.2268355936946961 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0028847956843456564 0.0 10 0.0 0.0 0.0 0.005048392447604898 0.0 11 0.0 0.0 0.0 0.005769591368691313 0.0 12 0.0 0.0 0.0 0.005769591368691313 0.0 13 0.0 0.0 0.0 0.005769591368691313 0.0 14 0.0 0.0 0.0 0.005769591368691313 0.0 15 0.0 0.0 0.0 0.007211989210864141 0.0 16 0.0 0.0 0.0 0.007933188131950555 0.0 17 0.0 0.0 0.0 0.007933188131950555 0.0 18 0.0 0.0 0.0 0.008654387053036968 0.0 19 0.0 0.0 0.0 0.010096784895209796 0.0 20 0.0 0.0 0.0 0.013702779500641867 0.0 21 0.0 0.0 0.0 0.016587575184987522 0.0 22 0.0 0.0 0.0 0.020193569790419592 0.0 23 0.0 0.0 0.0 0.02307836547476525 0.0 24 0.0 0.0 0.0 0.03029035468562939 0.0 25 0.0 0.0 0.0 0.033175150369975044 0.0 26 0.0 0.0 0.0 0.03533874713323429 0.0 27 0.0 0.0 0.0 0.059138311529085955 0.0 28 0.0 0.0 0.0 0.08654387053036969 0.0 29 0.0 0.0 0.0 0.11539182737382625 0.0 30 0.0 0.0 0.0 0.1485669777438013 0.0 31 0.0 0.0 0.0 0.1687605475342209 0.0 32 0.0 0.0 0.0 0.20121449898310953 0.0 33 0.0 0.0 0.0 0.2416016385639487 0.0 34 0.0 0.0 0.0 0.297855154408689 0.0 35 0.0 0.0 0.0 0.3995442022818734 0.0 36 0.0 0.0 0.0 0.4839244760489838 0.0 37 0.0 0.0 0.0 0.7334593027448831 0.0 38 0.0 0.0 0.0 1.0140056830474982 0.0 39 0.0 0.0 0.0 1.381095933880483 0.0 40 0.0 0.0 0.0 1.7618889642141096 0.0 41 0.0 0.0 0.0 2.2934125690547966 0.0 42 0.0 0.0 0.0 2.798973012736373 0.0 43 0.0 0.0 0.0 3.370883757157899 0.0 44 0.0 0.0 0.0 3.975248453028314 0.0 45 0.0 0.0 0.0 4.3574838812041135 0.0 46 0.0 0.0 0.0 4.842129556174184 0.0 47 0.0 0.0 0.0 5.429185477938525 0.0 48 0.0 0.0 0.0 5.879934803617534 0.0 49 0.0 0.0 0.0 6.280200204820494 0.0 50 0.0 0.0 0.0 6.888170895296341 0.0 51 0.0 0.0 0.0 7.494699187930014 0.0 52 0.0 0.0 0.0 8.075985518325664 0.0 53 0.0 0.0 0.0 8.75679729983124 0.0 54 0.0 0.0 0.0 9.447705866232024 0.0 55 0.0 0.0 0.0 9.897733992989947 0.0 56 0.0 0.0 0.0 10.36579209277503 0.0 57 0.0 0.0 7.211989210864141E-4 10.81221422492752 0.0 58 0.0 0.0 7.211989210864141E-4 11.24421237865828 0.0 59 0.0 0.0 7.211989210864141E-4 11.721646064417488 0.0 60 0.0 0.0 7.211989210864141E-4 12.034646396168991 0.0 61 0.0 0.0 7.211989210864141E-4 12.346204330078322 0.0 62 0.0 0.0 7.211989210864141E-4 12.576987984825974 0.0 63 0.0 0.0 7.211989210864141E-4 12.882776327366614 0.0 64 0.0 0.0 0.0014423978421728282 13.221739820277229 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTGG 15 0.0022214046 69.99495 45 GCCGTAT 70 0.0 59.995678 54 TCGGTGG 130 0.0 59.226498 45 CTGTCGT 25 2.3845349E-4 55.99596 52 TCTCGGT 125 0.0 53.19616 43 TACGGCC 20 0.0069214078 52.534103 67 ACGTTAC 20 0.006941194 52.496216 41 CGACTTT 20 0.006941194 52.496216 25 TGGGACC 20 0.006941194 52.496216 4 GTAACAC 20 0.006941194 52.496216 18 CTCGGTG 145 0.0 50.686 44 ATCTCGG 105 0.0 49.99639 42 GTGTACA 30 5.8635196E-4 46.6633 36 CTCTCGG 60 4.8894435E-9 46.6633 42 TAGATCT 85 1.8189894E-12 45.290848 39 CGGTGGT 140 0.0 44.996758 46 CTGTGTA 55 1.3021963E-7 44.542244 34 CGCCGTA 80 2.910383E-11 43.746845 53 TGCCGTA 40 4.575777E-5 43.746845 53 CCGTATC 100 0.0 41.99697 55 >>END_MODULE