##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779729_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 138658 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.65691124926077 34.0 34.0 34.0 34.0 34.0 2 33.65899551414271 34.0 34.0 34.0 34.0 34.0 3 33.69500497627256 34.0 34.0 34.0 34.0 34.0 4 33.71951131561107 34.0 34.0 34.0 34.0 34.0 5 33.71673469976489 34.0 34.0 34.0 34.0 34.0 6 37.37598984551919 38.0 38.0 38.0 37.0 38.0 7 37.375304706544156 38.0 38.0 38.0 37.0 38.0 8 37.26826436267651 38.0 38.0 38.0 36.0 38.0 9 37.25699202353993 38.0 38.0 38.0 36.0 38.0 10-11 37.178136133508346 38.0 38.0 38.0 36.0 38.0 12-13 37.14753566328665 38.0 38.0 38.0 36.0 38.0 14-15 37.180580997850825 38.0 38.0 38.0 36.0 38.0 16-17 37.16112665695452 38.0 38.0 38.0 36.0 38.0 18-19 37.15851952285479 38.0 38.0 38.0 36.0 38.0 20-21 37.15168976907211 38.0 38.0 38.0 36.0 38.0 22-23 37.12783972075178 38.0 38.0 38.0 36.0 38.0 24-25 37.1120562823638 38.0 38.0 38.0 36.0 38.0 26-27 37.045197536384485 38.0 38.0 38.0 35.5 38.0 28-29 36.980668262920275 38.0 38.0 38.0 35.5 38.0 30-31 36.803274964300655 38.0 37.0 38.0 35.0 38.0 32-33 36.83991186949184 38.0 37.5 38.0 35.0 38.0 34-35 36.87329256155433 38.0 38.0 38.0 35.0 38.0 36-37 36.8492441835307 38.0 37.0 38.0 35.0 38.0 38-39 36.361760590806156 38.0 37.0 38.0 34.0 38.0 40-41 36.78210056397756 38.0 37.0 38.0 34.5 38.0 42-43 36.95099092731758 38.0 37.5 38.0 35.0 38.0 44-45 36.94391957189632 38.0 38.0 38.0 35.0 38.0 46-47 36.96585483708117 38.0 38.0 38.0 35.5 38.0 48-49 36.94972882920567 38.0 38.0 38.0 35.5 38.0 50-51 36.87715097578214 38.0 37.5 38.0 35.0 38.0 52-53 36.868983398000836 38.0 38.0 38.0 35.0 38.0 54-55 36.85551861414415 38.0 37.5 38.0 35.0 38.0 56-57 36.88204431046171 38.0 37.0 38.0 35.0 38.0 58-59 36.81178150557487 38.0 37.0 38.0 35.0 38.0 60-61 36.88161880309828 38.0 37.5 38.0 35.0 38.0 62-63 36.91249693490458 38.0 38.0 38.0 35.0 38.0 64-65 36.93589623389923 38.0 38.0 38.0 35.0 38.0 66-67 36.875917725627076 38.0 38.0 38.0 35.0 38.0 68-69 36.70630255737137 38.0 37.5 38.0 34.5 38.0 70-71 35.76475933592003 38.0 37.0 38.0 29.5 38.0 72-73 34.171977094722266 38.0 36.5 38.0 21.0 38.0 74-75 33.98321409511171 38.0 36.0 38.0 19.0 38.0 76 33.556779991057134 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 2.0 21 3.0 22 6.0 23 16.0 24 36.0 25 66.0 26 131.0 27 227.0 28 472.0 29 715.0 30 1223.0 31 1872.0 32 2955.0 33 4483.0 34 8117.0 35 15841.0 36 21068.0 37 81425.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.13885964026598 16.461365373797403 10.992513955199124 35.407261030737494 2 19.626707438445674 16.965483419636804 39.3197651776313 24.08804396428623 3 17.823710135729637 19.165861327871454 36.70686148653522 26.30356704986369 4 13.171977094722267 25.157581964257382 32.95879069364912 28.711650247371228 5 12.952732622711997 31.127666633010715 41.001601061604816 14.917999682672475 6 26.96057926697342 41.57351180602634 16.653925485727473 14.811983441272773 7 26.04105064258824 26.51992672618962 18.783625899695654 28.65539673152649 8 22.81657026641088 40.240736199858645 16.59911436772491 20.34357916600557 9 21.483794660243188 16.405833056873746 17.082317644852804 45.02805463803026 10-11 22.89193555366441 27.297379163120773 27.717477534653607 22.09320774856121 12-13 22.694687648747276 19.368157625236194 28.31030304778664 29.626851678229887 14-15 20.749974758037762 19.907975017669376 20.757907946169713 38.58414227812315 16-17 27.857750724804912 27.906792251438794 20.492867342670458 23.74258968108584 18-19 27.74812848879978 23.314197521960505 21.148437161938006 27.789236827301707 20-21 21.11273781534423 22.14729766764269 21.25048680927173 35.48947770774135 22-23 21.439801526056918 28.495651170505848 21.348209263078942 28.71633804035829 24-25 27.45099453331218 28.723550029569157 21.126079995384327 22.69937544173434 26-27 27.666633010717018 29.527686826580506 21.661930793751534 21.143749368950946 28-29 27.543668594671782 23.57995932438085 21.92228360426373 26.95408847668364 30-31 27.764716063984768 28.364032367407578 21.666979186199136 22.204272382408515 32-33 21.654718804540668 28.38098054205311 22.062196194954492 27.90210445845173 34-35 26.709962641895892 23.170318337203767 22.580377619755083 27.53934140114526 36-37 22.214008567843184 27.128979215047096 28.540726103073748 22.116286114035972 38-39 20.16219763735233 23.11190122459577 29.62000028847957 27.10590084957233 40-41 20.061590387860782 21.08821705202729 30.513205152245092 28.336987407866836 42-43 26.510551140215494 20.85779399674018 29.857635332977544 22.774019530066784 44-45 20.156788645444188 27.00709659738349 30.76923076923077 22.066883987941555 46-47 25.896450258910413 21.118868006173464 25.05661411530528 27.928067619610843 48-49 25.248453028314273 20.378917913138803 24.618485770745288 29.754143287801643 50-51 20.03779082346493 20.759350344011885 30.628236380158373 28.57462245236481 52-53 18.341530961069683 20.493588541591542 37.41796362272642 23.746916874612356 54-55 17.945953352853785 20.9814796117065 32.11715155274128 28.955415482698438 56-57 24.270867890781638 21.004197377720722 25.750046877929872 28.974887853567772 58-59 18.999624976561037 21.47153427858472 35.50318048724199 24.025660257612255 60-61 24.295028054638028 27.73839230336511 24.77174054147615 23.194839100520706 62-63 17.929365777668796 35.79598724920308 22.61283157120397 23.66181540192416 64-65 17.494482828253688 36.998947049575214 21.645343218566545 23.861226903604553 66-67 17.63511661786554 36.893291407636056 21.113819613725855 24.357772360772547 68-69 17.77575040747739 37.14715342785847 20.73843557530038 24.33866058936376 70-71 18.43672921865309 35.963665998355665 20.801901080355982 24.79770370263526 72-73 19.261420184915405 32.31295705981624 21.39075999942304 27.034862755845317 74-75 19.725872290095054 30.99208123584647 21.703760331174546 27.57828614288393 76 19.849557905061374 31.07285551500815 21.67274877756783 27.404837802362646 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 1.5 16 1.5 17 0.0 18 5.0 19 12.0 20 14.0 21 14.0 22 29.5 23 56.5 24 126.0 25 184.0 26 230.0 27 277.0 28 364.0 29 450.0 30 608.0 31 866.5 32 1250.5 33 1534.0 34 1773.0 35 2352.5 36 2951.0 37 3209.0 38 3601.5 39 4586.0 40 5755.0 41 9250.0 42 12168.0 43 12875.0 44 12839.0 45 11016.0 46 9936.0 47 9199.0 48 7805.0 49 6573.0 50 5998.0 51 5633.5 52 4666.5 53 3735.5 54 3407.0 55 3055.5 56 2511.0 57 2056.5 58 1795.0 59 1668.5 60 1547.0 61 1483.5 62 1415.0 63 1418.0 64 1436.0 65 1491.5 66 1457.0 67 1382.0 68 1350.5 69 1322.5 70 1332.5 71 1339.0 72 1339.5 73 1298.5 74 1183.5 75 1110.0 76 1061.5 77 888.0 78 701.5 79 640.0 80 558.0 81 392.5 82 268.0 83 227.0 84 178.0 85 102.5 86 54.5 87 33.0 88 27.0 89 13.0 90 2.5 91 0.5 92 1.0 93 1.5 94 1.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 138658.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.848144355176046 #Duplication Level Percentage of deduplicated Percentage of total 1 47.04483695652174 14.982907585570251 2 22.384510869565215 14.258102669878406 3 12.033514492753623 11.497353199959614 4 6.107336956521739 7.780293960680234 5 3.308423913043478 5.268358118536255 6 1.9859601449275361 3.7949487227567107 7 1.589673913043478 3.5439714982186383 8 1.0235507246376812 2.6078552986484733 9 0.7608695652173914 2.1809055373653163 >10 3.6956521739130435 18.751171948246764 >50 0.02943840579710145 0.5430627875780697 >100 0.024909420289855072 1.4827849817536674 >500 0.004528985507246377 0.914480231937573 >1k 0.004528985507246377 1.959497468591787 >5k 0.0 0.0 >10k+ 0.0022644927536231885 10.434305990278238 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 14468 10.434305990278238 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 1685 1.2152201820306077 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 1032 0.7442772865611793 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 728 0.5250328145509094 TruSeq Adapter, Index 2 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 540 0.38944741738666355 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 417 0.30073995009303467 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT 305 0.21996567093135627 No Hit CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 271 0.1954449076144182 No Hit CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 166 0.11971902090034472 No Hit TTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 151 0.10890103708404851 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 143 0.1031314457153572 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 7.211989210864141E-4 0.0 6 0.0 0.0 0.0 7.211989210864141E-4 0.0 7 0.0 0.0 0.0 0.0014423978421728282 0.0 8 0.0 0.0 0.0 0.0028847956843456564 0.0 9 0.0 0.0 0.0 0.005769591368691313 0.0 10 0.0 0.0 0.0 0.007933188131950555 0.0 11 0.0 0.0 0.0 0.010096784895209796 0.0 12 0.0 0.0 0.0 0.011539182737382626 0.0 13 0.0 0.0 0.0 0.011539182737382626 0.0 14 0.0 0.0 0.0 0.011539182737382626 0.0 15 0.0 0.0 0.0 0.013702779500641867 0.0 16 0.0 0.0 0.0 0.01586637626390111 0.0 17 0.0 0.0 0.0 0.01586637626390111 0.0 18 0.0 0.0 0.0 0.018751171948246766 0.0 19 0.0 0.0 0.0 0.020193569790419592 0.0 20 0.0 0.0 0.0 0.021635967632592422 0.0 21 0.0 0.0 0.0 0.025241962238024492 0.0 22 0.0 0.0 0.0 0.028126757922370148 0.0 23 0.0 0.0 0.0 0.03389634929106146 0.0 24 0.0 0.0 0.0 0.0411083385019256 0.0 25 0.0 0.0 0.0 0.04543553202844409 0.0 26 0.0 0.0 0.0 0.050483924476048984 0.0 27 0.0 0.0 0.0 0.08293787592493762 0.0 28 0.0 0.0 0.0 0.12044021982143115 0.0 29 0.0 0.0 0.0 0.16731814969204806 0.0 30 0.0 0.0 0.0 0.21419607956266498 0.0 31 0.0 0.0 0.0 0.2805463803026151 0.0 32 0.0 0.0 0.0 0.3548298691745157 0.0 33 0.0 0.0 0.0 0.45002812675792236 0.0 34 0.0 0.0 0.0 0.6022010991071557 0.0 35 0.0 0.0 0.0 0.7788948347733272 0.0 36 0.0 0.0 0.0 1.0529504247861645 0.0 37 0.0 0.0 0.0 1.480621384990408 0.0 38 0.0 0.0 0.0 2.030896161779342 0.0 39 0.0 0.0 0.0 2.6619452177299543 0.0 40 0.0 0.0 0.0 3.2756854995744926 0.0 41 0.0 0.0 0.0 4.058186328953252 0.0 42 0.0 0.0 0.0 4.84501435185853 0.0 43 0.0 0.0 0.0 5.665738724054869 0.0 44 0.0 0.0 0.0 6.526129036910961 0.0 45 0.0 0.0 0.0 7.333871828527744 0.0 46 0.0 0.0 0.0 8.18128056080428 0.0 47 0.0 0.0 0.0 9.053931255318842 0.0 48 0.0 0.0 0.0 9.924418353070143 0.0 49 0.0 0.0 0.0 10.740094332818877 0.0 50 0.0 0.0 0.0 11.555770312567612 0.0 51 0.0 0.0 0.0 12.318077572155952 0.0 52 0.0 0.0 0.0 13.152504723852934 0.0 53 0.0 0.0 0.0 13.942217542442556 0.0 54 0.0 0.0 0.0 14.744911941611734 0.0 55 0.0 0.0 0.0 15.510103996884421 0.0 56 0.0 0.0 0.0 16.21399414386476 0.0 57 0.0 0.0 0.0 16.949617043372903 0.0 58 0.0 0.0 0.0 17.713366700803416 0.0 59 0.0 0.0 0.0 18.421584041310275 0.0 60 0.0 0.0 0.0 19.13268617750148 0.0 61 0.0 0.0 0.0 19.851000302903547 0.0 62 0.0 0.0 0.0 20.558496444489318 0.0 63 0.0 0.0 0.0 21.228490242178598 0.0 64 0.0 0.0 0.0 21.970603931976516 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTGT 20 7.904091E-5 70.0 34 GTACACT 15 0.0022207692 70.0 36 CAGCATG 15 0.0022207692 70.0 9 CTATAAG 15 0.0022207692 70.0 38 TTAAGCC 15 0.0022207692 70.0 31 CATCGTT 20 7.904091E-5 70.0 32 CGTAAGA 15 0.0022207692 70.0 32 CACTTAC 15 0.0022207692 70.0 39 TCTTTAT 35 2.9567855E-7 60.000004 1 TACGACA 25 2.3836856E-4 55.999996 49 ACAACGA 20 0.006939215 52.5 70 GTCTGGA 20 0.006939215 52.5 58 CTTCAAG 20 0.006939215 52.5 44 GGACTTG 20 0.006939215 52.5 18 ACTCTGG 20 0.006939215 52.5 8 GAGAGGC 20 0.006939215 52.5 33 CGTAGCC 20 0.006939215 52.5 30 TAACAAG 40 7.4362833E-7 52.5 31 TCGTAAG 20 0.006939215 52.5 31 GACTGCA 20 0.006939215 52.5 7 >>END_MODULE