##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779728_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 69053 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.63785787728267 34.0 34.0 34.0 34.0 34.0 2 33.63739446512099 34.0 34.0 34.0 34.0 34.0 3 33.65039896890794 34.0 34.0 34.0 34.0 34.0 4 33.688369802905015 34.0 34.0 34.0 34.0 34.0 5 33.68852910083559 34.0 34.0 34.0 34.0 34.0 6 37.31920408961233 38.0 38.0 38.0 36.0 38.0 7 37.318002114317984 38.0 38.0 38.0 36.0 38.0 8 37.212358623086615 38.0 38.0 38.0 36.0 38.0 9 37.25480428076985 38.0 38.0 38.0 36.0 38.0 10-11 37.137633412016854 38.0 38.0 38.0 36.0 38.0 12-13 37.11672193822136 38.0 38.0 38.0 36.0 38.0 14-15 37.140812129813334 38.0 38.0 38.0 36.0 38.0 16-17 37.055754275701275 38.0 38.0 38.0 35.5 38.0 18-19 37.05508087990384 38.0 38.0 38.0 35.0 38.0 20-21 37.09484019521237 38.0 38.0 38.0 35.5 38.0 22-23 37.04794143628807 38.0 38.0 38.0 35.0 38.0 24-25 37.01773999681404 38.0 38.0 38.0 35.0 38.0 26-27 36.92123441414566 38.0 38.0 38.0 35.0 38.0 28-29 36.769184539411754 38.0 37.5 38.0 34.5 38.0 30-31 36.54435723285013 38.0 37.0 38.0 34.0 38.0 32-33 36.62250010861223 38.0 37.0 38.0 34.0 38.0 34-35 36.63824164047905 38.0 37.0 38.0 34.0 38.0 36-37 36.60779401329414 38.0 37.0 38.0 34.0 38.0 38-39 35.31829174691903 38.0 36.0 38.0 29.0 38.0 40-41 36.34114375914153 38.0 37.0 38.0 34.0 38.0 42-43 36.78177631674221 38.0 37.0 38.0 34.5 38.0 44-45 36.77696117474983 38.0 37.0 38.0 34.5 38.0 46-47 36.8090307445006 38.0 37.0 38.0 34.5 38.0 48-49 36.785548781370835 38.0 37.0 38.0 34.5 38.0 50-51 36.65246984200542 38.0 37.0 38.0 34.0 38.0 52-53 36.6467858022099 38.0 37.0 38.0 34.0 38.0 54-55 36.64908114057319 38.0 37.0 38.0 34.0 38.0 56-57 36.671983838500864 38.0 37.0 38.0 34.0 38.0 58-59 36.520187392292875 38.0 37.0 38.0 34.0 38.0 60-61 36.58251632803788 38.0 37.0 38.0 34.0 38.0 62-63 36.62331107989515 38.0 37.0 38.0 34.0 38.0 64-65 36.646011035002104 38.0 37.0 38.0 34.0 38.0 66-67 36.5357623854141 38.0 37.0 38.0 34.0 38.0 68-69 36.18798603970863 38.0 37.0 38.0 33.5 38.0 70-71 34.134700881931266 38.0 34.0 38.0 21.0 38.0 72-73 30.7187812260148 38.0 23.0 38.0 11.0 38.0 74-75 30.281674945331847 38.0 23.0 38.0 11.0 38.0 76 29.93962608431205 37.0 23.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 2.0 22 9.0 23 17.0 24 27.0 25 42.0 26 82.0 27 172.0 28 327.0 29 566.0 30 849.0 31 1409.0 32 2030.0 33 3189.0 34 5605.0 35 12333.0 36 12470.0 37 29922.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.226738881728526 11.721431364314368 10.697580119618264 46.35424963433884 2 16.553951312759764 11.557788944723619 47.82847957366081 24.059780168855806 3 17.262103022316193 13.107323360317439 44.14724921437157 25.4833244029948 4 13.693829377434724 33.112247114535215 24.34362011788047 28.850303390149595 5 14.746643882235386 24.930126134997753 45.055247418649444 15.267982564117416 6 27.44848160108902 44.003881076854015 12.545436114289025 16.002201207767946 7 24.255282174561568 20.432131840759997 13.286895572965692 42.02569041171274 8 20.398824091639757 45.604101197630804 11.967619075203105 22.029455635526336 9 18.31781385312731 13.6561771392988 10.79605520397376 57.22995380360013 10-11 23.16409135012237 27.472376290675278 25.817850057202442 23.54568230199991 12-13 21.651485091161863 12.120400272254644 28.557774463093565 37.67034017348993 14-15 21.216312108090886 11.87131623535545 14.645272471869433 52.26709918468423 16-17 35.84275846089236 25.38702156314715 11.84886970877442 26.92135026718607 18-19 36.506017117286724 15.919655916469958 11.903175821470464 35.67115114477286 20-21 22.64709715725602 13.46501962260872 12.084920278626562 51.8029629415087 22-23 22.96134852939047 26.953209853301086 11.943724385616845 38.141717231691594 24-25 35.97164496835764 26.933659652730512 11.812665633643723 25.282029745268126 26-27 36.00278047297004 29.774231387484974 12.229736579149348 21.993251560395638 28-29 22.888940379129075 29.21741271197486 13.176111103065761 34.7175358058303 30-31 22.844771407469626 29.037840499326606 25.50215052206276 22.61523757114101 32-33 47.762588156922945 14.735782659696175 16.73714393292109 20.764485250459792 34-35 26.49052177313078 25.79467944911879 27.17260654859311 20.542192229157312 36-37 34.594441950385935 27.9256513113116 15.46348456982318 22.016422168479284 38-39 21.973701359825064 15.59599148480153 27.887999073175678 34.54230808219773 40-41 20.545812636670384 12.573675292890968 30.01607460935803 36.86443746108062 42-43 34.37070076607823 12.259423920756522 28.9335727629502 24.436302550215053 44-45 20.860064008804834 25.83595209476779 31.010962593949575 22.293021302477804 46-47 33.081111609922814 13.798097113811131 19.207710019839833 33.913081256426224 48-49 32.512707630370876 12.642463035639292 16.165119545856083 38.679709788133756 50-51 21.008500716840686 13.08560091523902 30.118170101226593 35.7877282666937 52-53 17.9485322867942 13.092841730265159 43.8112753971587 25.147350585781936 54-55 18.128828580945072 12.826379737303231 33.07314671339406 35.97164496835764 56-57 31.720562466511232 12.940784614716232 19.83621276410873 35.50244015466381 58-59 19.957858456547868 14.575036566115882 40.75782370063574 24.709281276700505 60-61 31.722010629516458 28.062502715305637 18.376464454839038 21.83902220033887 62-63 18.689267663968256 45.33981144917672 13.64531591675959 22.325604970095434 64-65 17.580698883466322 47.25717926809841 13.124701316380172 22.037420532055087 66-67 18.110726543379723 47.3809972050454 12.40496430278192 22.103311948792957 68-69 17.739272732538776 47.88640609386993 12.725732408439894 21.648588765151406 70-71 17.943463716275904 45.04293803310501 13.724964882047122 23.28863336857197 72-73 19.097649631442515 37.60444875675206 16.59377579540353 26.7041258164019 74-75 20.17870331484512 34.261364459183525 18.06583349021766 27.494098735753695 76 20.094709860541904 34.8992802629864 17.761719259119808 27.24429061735189 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.0 16 3.5 17 6.0 18 7.0 19 6.5 20 8.0 21 11.0 22 23.0 23 30.5 24 38.5 25 51.0 26 59.5 27 84.5 28 121.5 29 142.0 30 144.0 31 170.0 32 237.5 33 281.0 34 336.0 35 407.0 36 426.0 37 429.0 38 660.0 39 3890.0 40 7397.0 41 6976.0 42 6047.0 43 4999.0 44 3107.0 45 1839.0 46 1415.0 47 1279.5 48 1032.0 49 903.0 50 886.0 51 821.5 52 704.5 53 745.0 54 838.0 55 864.5 56 953.0 57 1103.0 58 1191.0 59 1270.0 60 1458.0 61 1666.5 62 1766.0 63 1769.0 64 1829.0 65 1884.0 66 1936.5 67 1991.0 68 1999.5 69 2091.5 70 2123.5 71 2072.0 72 1932.5 73 1790.5 74 1687.0 75 1586.0 76 1516.5 77 1283.0 78 1035.5 79 952.0 80 829.0 81 575.0 82 397.0 83 350.0 84 273.0 85 167.5 86 94.0 87 49.0 88 37.0 89 18.5 90 8.5 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 69053.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.968618307676714 #Duplication Level Percentage of deduplicated Percentage of total 1 57.10728752462002 22.253920901336656 2 24.757516072689434 19.295323881656117 3 10.843955553903898 12.677218947764759 4 4.214203426362927 6.568867391713611 5 1.5719647701512505 3.0628647560569418 6 0.6800698651008956 1.5900829797401996 7 0.26013601397302016 0.7095998725616556 8 0.1486491508417258 0.4634121616729179 9 0.09662194804712178 0.33887014322332126 >10 0.2527035564309339 1.597323794766339 >50 0.007432457542086291 0.1781240496430278 >100 0.04459474525251775 3.797083399707471 >500 0.0037162287710431454 1.1208781660463703 >1k 0.007432457542086291 4.270632702416984 >5k 0.0 0.0 >10k+ 0.0037162287710431454 22.075796851693628 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 15244 22.075796851693628 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 1827 2.6457938105513157 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1122 1.6248388918656684 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 774 1.1208781660463703 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 470 0.6806366124570982 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 428 0.6198137662375277 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 328 0.47499746571474083 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 299 0.43300073856313265 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 186 0.26935831897238355 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 149 0.21577628777895239 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 141 0.20419098373712943 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 135 0.19550200570576226 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 126 0.18246853865871143 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAGCTCGTATGCCGT 125 0.18102037565348356 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCG 118 0.17088323461688848 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGAACTCGTATGCCGT 117 0.16943507161166063 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.01882611906796229 0.0 2 0.0 0.0 0.0 0.01882611906796229 0.0 3 0.0 0.0 0.0 0.01882611906796229 0.0 4 0.0 0.0 0.0 0.024618771088873764 0.0 5 0.0 0.0 0.0 0.030411423109785236 0.0 6 0.0 0.0 0.0 0.030411423109785236 0.0 7 0.0 0.0 0.0 0.030411423109785236 0.0 8 0.0 0.0 0.0 0.030411423109785236 0.0 9 0.0 0.0 0.0 0.03910040114115245 0.0 10 0.0 0.0 0.0 0.04199672715160818 0.0 11 0.0 0.0 0.0 0.04199672715160818 0.0 12 0.0 0.0 0.0 0.04489305316206392 0.0 13 0.0 0.0 0.0 0.04489305316206392 0.0 14 0.0 0.0 0.0 0.04778937917251966 0.0 15 0.0 0.0 0.0 0.050685705182975396 0.0 16 0.0 0.0 0.0 0.052133868188203265 0.0 17 0.0 0.0 0.0 0.055030194198659 0.0 18 0.0 0.0 0.0 0.055030194198659 0.0 19 0.0 0.0 0.0 0.06227100922479834 0.0 20 0.0 0.0 0.0 0.06371917223002621 0.0 21 0.0 0.0 0.0 0.07240815026139343 0.0 22 0.0 0.0 0.0 0.08109712829276064 0.0 23 0.0 0.0 0.0 0.0868897803136721 0.0 24 0.0 0.0 0.0 0.09123426932935572 0.0 25 0.0 0.0 0.0 0.09413059533981145 0.0 26 0.0 0.0 0.0 0.09992324736072292 0.0 27 0.0 0.0 0.0 0.15495344155938193 0.0 28 0.0 0.0 0.0 0.23315424384168681 0.0 29 0.0 0.0 0.0 0.3229403501658147 0.0 30 0.0 0.0 0.0 0.40114115244811954 0.0 31 0.0 0.0 0.0 0.5097533778402097 0.0 32 0.0 0.0 0.0 0.6227100922479835 0.0 33 0.0 0.0 0.0 0.7747672077969097 0.0 34 0.0 0.0 0.0 1.045573689774521 0.0 35 0.0 0.0 0.0 1.3989254630501209 0.0 36 0.0 0.0 0.0 1.8608894617178109 0.0 37 0.0 0.0 0.0 2.621175039462442 0.0 38 0.0 0.0 0.0 3.378564291196617 0.0 39 0.0 0.0 0.0 4.0548564146380315 0.0 40 0.0 0.0 0.0 4.699288951964433 0.0 41 0.0 0.0 0.0 5.371236586390164 0.0 42 0.0 0.0 0.0 6.035943405789756 0.0 43 0.0 0.0 0.0 6.700650225189348 0.0 44 0.0 0.0 0.0 7.297293383343229 0.0 45 0.0 0.0 0.0 8.090886710208101 0.0 46 0.0 0.0 0.0 8.80483107178544 0.0 47 0.0 0.0 0.0 9.521671759373236 0.0 48 0.0 0.0 0.0 10.111074102500977 0.0 49 0.0 0.0 0.0 10.642549925419605 0.0 50 0.0 0.0 0.0 11.13492534719708 0.0 51 0.0 0.0 0.0 11.647575051047745 0.0 52 0.0 0.0 0.0 12.180499036971602 0.0 53 0.0 0.0 0.0 12.619292427555646 0.0 54 0.0 0.0 0.0 13.108771523322666 0.0 55 0.0 0.0 0.0 13.556253891938077 0.0 56 0.0 0.0 0.0 13.96173953340188 0.0 57 0.0 0.0 0.0 14.445425977147988 0.0 58 0.0 0.0 0.0 14.884219367732031 0.0 59 0.0 0.0 0.0 15.25205277105991 0.0 60 0.0 0.0 0.0 15.595267403298916 0.0 61 0.0 0.0 0.0 16.010890185799315 0.0 62 0.0 0.0 0.0 16.403342360216065 0.0 63 0.0 0.0 0.0 16.826205957742605 0.0 64 0.0 0.0 0.0 17.29106628242075 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCCAA 15 0.002216035 70.0 11 TAGAATG 15 0.002216035 70.0 4 ATCGTAT 15 0.002216035 70.0 39 GGAAGTC 15 0.002216035 70.0 28 ATATCGT 15 0.002216035 70.0 37 ACAGCCA 15 0.002216035 70.0 62 CTATTGT 15 0.002216035 70.0 1 CTCGAAA 15 0.002216035 70.0 57 TCTTTAT 55 0.0 70.0 1 TTGCCAC 15 0.002216035 70.0 30 TATCGTA 15 0.002216035 70.0 38 TTCTGGG 15 0.002216035 70.0 2 TCGAAAA 15 0.002216035 70.0 58 GTTGCCA 15 0.002216035 70.0 29 CTATACA 35 2.9348848E-7 60.0 1 CTTTATA 65 0.0 59.230766 2 AACTCGT 25 2.375278E-4 55.999996 37 CTTTACA 25 2.375278E-4 55.999996 1 TTTATAC 70 0.0 55.0 3 GTAGACC 65 3.6379788E-12 53.846153 33 >>END_MODULE