##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779727_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 42799 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.982663146335195 23.0 12.0 32.0 12.0 34.0 2 22.901890231080166 23.0 12.0 32.0 12.0 34.0 3 22.796303651954485 23.0 11.0 32.0 11.0 34.0 4 21.959788780111683 23.0 12.0 32.0 11.0 34.0 5 22.628753008247855 23.0 11.0 32.0 11.0 34.0 6 22.986401551438117 23.0 11.0 34.0 11.0 37.0 7 23.99913549381995 26.0 12.0 34.0 12.0 38.0 8 23.29545082829038 26.0 11.0 34.0 11.0 38.0 9 24.82543984672539 26.0 12.0 34.0 12.0 38.0 10-11 23.644617864903385 25.5 11.0 34.0 11.0 38.0 12-13 24.33107081941167 26.5 11.0 35.0 11.0 37.5 14-15 22.843816444309446 23.0 11.0 34.0 11.0 37.0 16-17 23.143683263627658 24.5 11.0 33.5 11.0 37.5 18-19 23.571520362625293 25.5 11.5 34.0 11.0 37.0 20-21 22.725262272483 23.0 11.0 33.0 11.0 37.0 22-23 23.00822449122643 24.5 11.0 32.5 11.0 37.5 24-25 22.729900231313813 22.5 11.0 33.5 11.0 37.0 26-27 22.163251477838266 22.5 11.0 32.0 10.0 37.0 28-29 22.45150587630552 22.0 11.0 34.0 10.5 37.5 30-31 22.87650412392813 23.0 11.0 34.0 11.0 38.0 32-33 23.09014229304423 23.0 11.0 34.0 11.0 38.0 34-35 23.14915068109068 23.0 11.0 34.0 11.0 38.0 36-37 22.88568658146218 23.5 11.0 33.0 11.0 37.0 38-39 23.162351924110375 24.5 11.0 33.5 11.0 37.0 40-41 22.05640318699035 22.0 11.0 31.5 11.0 37.0 42-43 22.490992780205147 23.0 11.0 33.0 11.0 37.0 44-45 23.192656370475945 24.0 11.0 34.0 11.0 38.0 46-47 22.916364868338043 23.5 11.0 33.5 11.0 37.5 48-49 22.2058459309797 22.0 11.0 33.0 11.0 37.0 50-51 21.852391411014274 22.5 11.0 31.0 11.0 36.5 52-53 22.152223182784645 22.0 11.0 33.5 11.0 37.0 54-55 22.0433888642258 22.0 11.0 32.5 11.0 37.0 56-57 22.373676955069044 22.5 11.0 32.5 11.0 37.5 58-59 22.435968130096498 22.0 11.0 34.0 11.0 38.0 60-61 23.02729035725134 23.0 11.0 34.0 11.0 38.0 62-63 23.027056706932406 23.0 11.0 34.0 11.0 38.0 64-65 23.09257225636113 23.5 11.0 34.0 11.0 38.0 66-67 22.584744970676887 23.0 11.0 34.0 11.0 37.0 68-69 22.316818149956774 22.5 11.0 34.0 11.0 37.0 70-71 22.34200565433772 23.0 11.0 33.5 11.0 37.0 72-73 22.175763452417115 23.0 11.0 31.0 11.0 37.0 74-75 21.69884810392766 21.0 11.0 32.0 11.0 37.0 76 21.420500478983154 21.0 11.0 31.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 12.0 12 52.0 13 305.0 14 880.0 15 1463.0 16 2417.0 17 3818.0 18 4899.0 19 5280.0 20 4371.0 21 3182.0 22 2192.0 23 1557.0 24 1193.0 25 912.0 26 688.0 27 618.0 28 636.0 29 595.0 30 626.0 31 669.0 32 788.0 33 1028.0 34 1186.0 35 1416.0 36 1331.0 37 684.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.07764200098133 15.397556017663963 14.705951073623217 46.81885090773149 2 11.872050095798869 11.456142810411702 54.44880601897285 22.22300107481658 3 13.61947709058623 10.446505759480363 53.391434379307924 22.542582770625483 4 12.315708310941845 24.591696067665133 27.43054744269726 35.66204817869576 5 11.467557653216197 17.98406504824879 49.83294002196313 20.715437276571883 6 18.25276291502138 36.56393840977593 16.63356620481787 28.54973247038482 7 17.241459881302866 20.456563390812654 19.17846628347119 43.123510444413284 8 14.580120566381607 34.95023131922053 16.933034253937098 33.53661386046077 9 15.185289032197765 15.12220197205477 17.482125332959484 52.21038366278798 10-11 16.722744053460442 21.950792093088463 30.835553063227255 30.49091079022384 12-13 15.029907939623346 14.580120566381607 36.667601289779896 33.72237020421515 14-15 23.380765456329737 21.58044768447124 23.044301135567082 31.994485723631943 16-17 29.247862049628488 15.491378101780457 21.846815271741672 33.41394457684939 18-19 16.214542735641853 14.674751156596102 32.92910883686154 36.18159727090051 20-21 29.556287676994252 14.33828683583345 23.399457918594326 32.70596756857797 22-23 31.992149165848872 12.791485583438478 21.673909995794197 33.54245525491845 24-25 17.37581195382962 23.260432730501428 20.47408757418571 38.889667741483244 26-27 28.248983597364365 21.88186363848778 21.592130473386607 28.27702229076125 28-29 20.247441469227535 20.728772372540774 24.32823963736623 34.69554652086546 30-31 18.591990279919624 20.6948922846862 26.67297537268097 34.040142062713215 32-33 20.62129071451937 18.70998644796486 26.844712369736907 33.82401046777887 34-35 19.45418010187392 19.810505163792698 26.025748866769476 34.70956586756391 36-37 28.59245759147624 13.324220757979344 32.20360764521706 25.879714005327354 38-39 28.341277629795787 10.548390111687462 38.672367867657364 22.437964390859385 40-41 22.939156035328754 23.83172110846301 24.005794663302023 29.223328192906212 42-43 14.231973456703583 24.912379083134724 29.275900743025375 31.579746717136313 44-45 14.957474648348054 15.54044581522501 34.77732604327305 34.724753493153884 46-47 27.80036450301416 14.576615729706996 26.502406654516562 31.12061311276228 48-49 25.9696714799757 14.8546661058928 32.56226926491892 26.613393149212577 50-51 42.05219870087387 12.306649843450629 23.733585681573903 21.90756577410159 52-53 14.51252993749635 18.86441965068053 32.63274723990887 33.99030317191425 54-55 25.788588251787463 15.782279545773168 25.561942146829292 32.867190055610074 56-57 25.694257842163676 16.720602838950875 24.379928734155033 33.205210584730416 58-59 15.221505677835411 20.50563110425721 30.936025047899435 33.336838170007944 60-61 15.121033693163232 17.423711388382635 30.587877938221414 36.86737698023272 62-63 15.025234824057199 20.916865274078226 29.88691060329922 34.17098929856535 64-65 14.855834384784336 22.768587317164354 29.108836861535586 33.26674143651572 66-67 12.75176410112622 35.43857189588299 18.79410252815552 33.01556147483527 68-69 13.647039577466435 33.089893548650956 19.34002500613468 33.923041867747926 70-71 12.384924529183607 34.819384083368384 17.5522220664517 35.243469320996304 72-73 11.425767559231739 39.65372213654844 16.42483293611851 32.49567736810131 74-75 14.38969110706108 26.98490583672134 21.31524837609234 37.31015468012524 76 13.89317257815786 24.21374830599561 22.877237254077293 39.01584186176924 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.5 17 1.0 18 1.0 19 3.0 20 7.0 21 9.0 22 11.5 23 14.5 24 21.0 25 27.0 26 41.5 27 66.0 28 100.0 29 124.0 30 165.5 31 241.5 32 309.0 33 342.0 34 411.5 35 574.0 36 758.0 37 849.0 38 907.5 39 1074.0 40 1282.0 41 1462.5 42 1543.0 43 1648.5 44 1856.5 45 2018.5 46 2078.0 47 2055.0 48 2029.5 49 2032.0 50 2037.0 51 2024.5 52 1926.5 53 1764.5 54 1688.0 55 1682.5 56 1618.0 57 1487.0 58 1415.0 59 1391.5 60 1305.0 61 1220.5 62 1199.0 63 1175.0 64 1120.5 65 1018.0 66 935.5 67 925.0 68 873.5 69 751.0 70 678.0 71 676.0 72 611.5 73 492.0 74 433.0 75 429.0 76 363.0 77 272.0 78 185.0 79 123.0 80 129.0 81 101.5 82 57.5 83 47.0 84 40.5 85 24.5 86 9.5 87 4.0 88 4.5 89 2.5 90 1.0 91 1.0 92 0.0 93 1.5 94 1.5 95 0.5 96 1.0 97 0.5 98 1.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0023365031893268534 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0023365031893268534 8 0.0023365031893268534 9 0.0023365031893268534 10-11 0.0023365031893268534 12-13 0.0023365031893268534 14-15 0.0023365031893268534 16-17 0.0023365031893268534 18-19 0.0023365031893268534 20-21 0.0023365031893268534 22-23 0.0023365031893268534 24-25 0.0023365031893268534 26-27 0.0023365031893268534 28-29 0.0023365031893268534 30-31 0.0023365031893268534 32-33 0.0023365031893268534 34-35 0.0023365031893268534 36-37 0.0023365031893268534 38-39 0.0023365031893268534 40-41 0.0023365031893268534 42-43 0.0023365031893268534 44-45 0.0023365031893268534 46-47 0.0023365031893268534 48-49 0.0023365031893268534 50-51 0.0023365031893268534 52-53 0.0035047547839902804 54-55 0.0023365031893268534 56-57 0.0035047547839902804 58-59 0.0023365031893268534 60-61 0.0023365031893268534 62-63 0.0023365031893268534 64-65 0.0023365031893268534 66-67 0.0023365031893268534 68-69 0.02219678029860511 70-71 0.0023365031893268534 72-73 0.0023365031893268534 74-75 0.0023365031893268534 76 0.0023365031893268534 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 42799.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.59812145143579 #Duplication Level Percentage of deduplicated Percentage of total 1 99.62934290473174 99.22895394752214 2 0.3378140615103104 0.6729129185261338 3 0.03284303375794684 0.09813313395172785 4 0.0 0.0 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0023365031893268534 0.0 2 0.0 0.0 0.0 0.0023365031893268534 0.0 3 0.0 0.0 0.0 0.0023365031893268534 0.0 4 0.0 0.0 0.0 0.007009509567980561 0.0 5 0.0 0.0 0.0 0.016355522325287974 0.0 6 0.0 0.0 0.0 0.016355522325287974 0.0 7 0.0 0.0 0.0 0.018692025514614827 0.0 8 0.0 0.0 0.0 0.018692025514614827 0.0 9 0.0 0.0 0.0 0.018692025514614827 0.0 10 0.0 0.0 0.0 0.018692025514614827 0.0 11 0.0 0.0 0.0 0.018692025514614827 0.0 12 0.0 0.0 0.0 0.018692025514614827 0.0 13 0.0 0.0 0.0 0.023365031893268533 0.0 14 0.0 0.0 0.0 0.025701535082595386 0.0 15 0.0 0.0 0.0 0.028038038271922243 0.0 16 0.0 0.0 0.0 0.028038038271922243 0.0 17 0.0 0.0 0.0 0.028038038271922243 0.0 18 0.0 0.0 0.0 0.028038038271922243 0.0 19 0.0 0.0 0.0 0.028038038271922243 0.0 20 0.0 0.0 0.0 0.0350475478399028 0.0 21 0.0 0.0 0.0 0.03972055421855651 0.0 22 0.0 0.0 0.0 0.058412579733171335 0.0 23 0.0 0.0 0.0 0.06308558611182505 0.0 24 0.0 0.0 0.0 0.07944110843711302 0.0 25 0.0 0.0 0.0 0.07944110843711302 0.0 26 0.0 0.0 0.0 0.08645061800509357 0.0 27 0.0 0.0 0.0 0.10747914670903526 0.0 28 0.0 0.0 0.0 0.1401901913596112 0.0 29 0.0 0.0 0.0 0.17757424238884087 0.0 30 0.0 0.0 0.0 0.20327577747143624 0.0 31 0.0 0.0 0.0 0.22897731255403164 0.0 32 0.0 0.0 0.0 0.27337087315124187 0.0 33 0.0 0.0 0.0 0.33879296245239376 0.0 34 0.0 0.0 0.0 0.37384051029229654 0.0 35 0.0 0.0 0.0 0.4813196570013318 0.0 36 0.0 0.0 0.0 0.5887988037103671 0.0 37 0.0 0.0 0.0 0.7990840907497839 0.0 38 0.0 0.0 0.0 1.0117058809785275 0.0 39 0.0 0.0 0.0 1.2710577349938084 0.0 40 0.0 0.0 0.0 1.514054066683801 0.0 41 0.0 0.0 0.0 1.7406948760485057 0.0 42 0.0 0.0 0.0 2.0023832332531133 0.0 43 0.0 0.0 0.0 2.1893034883992617 0.0 44 0.0 0.0 0.0 2.4369728264679082 0.0 45 0.0 0.0 0.0 2.623893081614056 0.0 46 0.0 0.0 0.0 2.834178368653473 0.0 47 0.0 0.0 0.0 3.060819178018178 0.0 48 0.0 0.0 0.0 3.203345872567116 0.0 49 0.0 0.0 0.0 3.3084885160868245 0.0 50 0.0 0.0 0.0 3.46036122339307 0.0 51 0.0 0.0 0.0 3.6776560200004673 0.0 52 0.0 0.0 0.0 3.810836701792098 0.0 53 0.0 0.0 0.0 4.053833033482091 0.0 54 0.0 0.0 0.0 4.252435804574874 0.0 55 0.0 0.0 0.0 4.439356059721021 0.0 56 0.0 0.0 0.0 4.549171709619384 0.0 57 0.0 0.0 0.0 4.6636603658963995 0.0 58 0.0 0.0 0.0 4.7641300030374545 0.0 59 0.0 0.0 0.0 4.885628168882451 0.0 60 0.0 0.0 0.0 4.972078786887544 0.0 61 0.0 0.0 0.0 5.058529404892638 0.0 62 0.0 0.0 0.0 5.1309610037617706 0.0 63 0.0 0.0 0.0 5.208065609009556 0.0 64 0.0 0.0 0.0 5.266478188742727 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGGTG 95 0.0 70.00001 44 CTAGAAA 15 0.0022102403 70.0 29 TGATACC 15 0.0022102403 70.0 2 GGTGTAG 25 2.7944516E-6 70.0 35 ATGGCGG 20 7.841763E-5 70.0 45 GACGTAA 15 0.0022102403 70.0 23 TCTTAGG 15 0.0022102403 70.0 45 TTGTCAT 20 7.841763E-5 70.0 2 GTCTAGA 15 0.0022102403 70.0 36 CACGAGT 15 0.0022102403 70.0 33 GCGTTGA 15 0.0022102403 70.0 36 AGAGTAG 20 7.841763E-5 70.0 35 TCGTGTA 40 1.2914825E-10 70.0 34 GGTGGAA 15 0.0022102403 70.0 47 TCTAACG 25 2.7944516E-6 70.0 11 ATGACCA 15 0.0022102403 70.0 62 GCTAGAA 15 0.0022102403 70.0 28 GAGCCAG 15 0.0022102403 70.0 48 CGTGTTT 15 0.0022102403 70.0 35 GATCTTG 20 7.841763E-5 70.0 41 >>END_MODULE