FastQCFastQC Report
Wed 25 May 2016
SRR1779726_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779726_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52898
Sequences flagged as poor quality0
Sequence length76
%GC55

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTTAGAT207.862632E-569.9933837
TCTTGGT353.6252459E-969.9933843
TAACGCT252.80522E-669.9933813
CTTGGTG353.6252459E-969.9933844
ATGTATA207.862632E-569.9933828
ATCTTGG252.80522E-669.9933842
TGCCTAC750.069.9933819
CGTAACA207.862632E-569.9933856
GTGGTAG401.3096724E-1069.9933848
AAGTGTA252.80522E-669.9933834
AGATCTT150.002213977569.9933740
CTCCGTA150.002213977569.9933753
TTAGACT150.002213977569.9933738
ACCGACG150.002213977569.9933720
ATATGTG150.002213977569.9933732
ATATGTA150.002213977569.9933726
GTCTAGA150.002213977569.9933736
CAATTAT150.002213977569.9933756
GCCATAT150.002213977569.9933723
GCCGAAA150.002213977569.9933723
Produced by FastQC (version 0.11.5)