##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779726_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 52898 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 23.541116866422172 23.0 12.0 33.0 12.0 34.0 2 23.800672993307874 23.0 12.0 33.0 12.0 34.0 3 23.428314870127416 23.0 11.0 32.0 11.0 34.0 4 23.268857045634995 23.0 12.0 33.0 11.0 34.0 5 23.690649930054068 23.0 11.0 34.0 11.0 34.0 6 24.494253090854098 26.0 12.0 36.0 11.0 38.0 7 25.500056712919204 27.0 12.0 36.0 12.0 38.0 8 24.601648455518166 26.0 11.0 36.0 11.0 38.0 9 26.327157926575673 28.0 12.0 37.0 12.0 38.0 10-11 25.350750500964118 27.0 11.0 37.0 11.0 38.0 12-13 25.746833528677833 27.5 11.0 36.0 11.0 38.0 14-15 24.617339029830994 26.0 11.0 35.5 11.0 38.0 16-17 24.709270671859052 26.5 11.0 35.5 11.0 38.0 18-19 25.0965537449431 26.5 11.5 36.0 11.0 38.0 20-21 24.315106431245038 25.5 11.0 35.0 11.0 38.0 22-23 24.479318688797306 25.0 11.0 35.5 11.0 38.0 24-25 24.510104351771332 25.5 11.0 35.0 11.0 38.0 26-27 23.6609890733109 23.0 11.0 34.0 10.0 38.0 28-29 24.50684335891716 26.0 11.0 36.0 11.0 38.0 30-31 24.916405157094786 26.0 11.0 37.0 11.0 38.0 32-33 25.12671556580589 26.0 11.0 37.0 11.0 38.0 34-35 25.21135959771636 26.5 11.0 37.0 11.0 38.0 36-37 24.414136640326667 25.0 11.0 35.0 11.0 38.0 38-39 24.185904949147414 25.5 11.0 34.0 11.0 37.5 40-41 23.691415554463305 25.0 11.0 34.0 11.0 37.5 42-43 24.234186547695565 26.0 11.0 35.0 11.0 38.0 44-45 25.223912057166622 26.5 11.0 37.0 11.0 38.0 46-47 24.68959128889561 26.0 11.0 35.5 11.0 38.0 48-49 23.92084766909902 25.0 11.0 35.0 11.0 38.0 50-51 23.13045861847329 23.0 11.0 34.0 11.0 37.5 52-53 24.123397860032515 25.0 11.0 35.0 11.0 38.0 54-55 23.921717267193465 24.0 11.0 35.0 11.0 38.0 56-57 24.247627509546675 24.5 11.0 35.5 11.0 38.0 58-59 24.608038111081704 25.5 11.0 36.5 11.0 38.0 60-61 25.155402850769406 26.0 11.0 37.0 11.0 38.0 62-63 25.136413474989602 26.5 11.0 37.0 11.0 38.0 64-65 25.049869560285835 26.5 11.0 37.0 11.0 38.0 66-67 24.17442058300881 25.0 11.0 34.5 11.0 38.0 68-69 23.92937351128587 25.0 11.0 34.5 11.0 38.0 70-71 23.867348481984195 25.0 11.0 34.0 11.0 38.0 72-73 23.522099134182767 24.0 11.0 34.0 11.0 37.5 74-75 23.563764225490566 24.5 11.0 34.5 11.0 37.5 76 23.273186131800824 24.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 6 1.0 7 0.0 8 0.0 9 0.0 10 0.0 11 5.0 12 67.0 13 363.0 14 949.0 15 1532.0 16 2652.0 17 3913.0 18 5123.0 19 5143.0 20 4341.0 21 3301.0 22 2348.0 23 1697.0 24 1266.0 25 1121.0 26 1034.0 27 957.0 28 980.0 29 1061.0 30 1168.0 31 1425.0 32 1619.0 33 1976.0 34 2330.0 35 2742.0 36 2593.0 37 1191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.471775870543308 14.70187908805626 13.204658021097208 43.62168702030323 2 16.560172407274376 11.628038867253961 47.9375401716511 23.87424855382056 3 15.282241294566903 12.036371885515521 47.99803395213429 24.68335286778328 4 15.771862830352754 22.4356308367046 23.537751899882796 38.25475443305985 5 14.69998865741616 19.59809444591478 44.12643200120988 21.575484895459184 6 25.10491890052554 32.6496275851639 14.524178607886876 27.72127490642368 7 23.4678059661991 19.27672123709781 16.524254225112482 40.73121857159061 8 18.92734937709133 32.91869104107983 17.426319072915287 30.727640508913552 9 19.203357468287425 13.675633778853244 16.54536174074144 50.575647012117884 10-11 21.187401932056638 20.794184925421103 28.041287785696735 29.97712535682553 12-13 19.186887353366544 13.902883988240966 33.74767229726536 33.16255636112713 14-15 25.68552389054303 20.01701403658018 21.322368731981662 32.97509334089513 16-17 30.73011191772535 14.770493042952207 21.216160012099213 33.28323502722323 18-19 19.99319412804492 14.194969326313203 29.729372063786148 36.08246448185574 20-21 30.0486790491044 14.399546292357861 22.57857176615152 32.97320289238622 22-23 32.27782293891903 13.175605421857572 20.817815755146796 33.7287558840766 24-25 21.177749421050144 21.271326622241126 19.103927406777256 38.44699654993147 26-27 28.744269577957372 20.51042109740536 21.5246467224349 29.220662602202374 28-29 23.373001994460882 19.589197773009555 22.67163233862354 34.366167893906024 30-31 21.92814133527427 19.585787070733808 24.66655953720071 33.81951205679122 32-33 23.279643073200244 18.303841500302482 24.793935269207502 33.622580157289775 34-35 22.255936176648518 18.647912885662432 24.238127646702964 34.85802329098608 36-37 29.20920296430732 13.16167574107683 30.05520266182698 27.573918632788867 38-39 28.782622668796616 10.970480088474662 36.28122843666405 23.965668806064674 40-41 24.24024728001437 22.428183871973985 23.0700154077379 30.261553440273747 42-43 17.365043055778738 22.85217358426361 27.420528768444036 32.36225459151362 44-45 17.42319689951791 15.185745344550524 32.699688061253426 34.69136969467814 46-47 27.867628292987252 14.489616515270388 26.670006522170652 30.972748669571708 48-49 26.240169388989713 15.31495765275257 30.644094071385357 27.80077888687235 50-51 38.72903945403331 13.22664801406507 24.426716070854678 23.61759646104694 52-53 16.34244555353902 19.126209921355112 30.69041137326074 33.840933151845135 54-55 25.47781537705352 16.051950016068965 25.535474601584212 32.934760005293306 56-57 25.46695402298851 17.13929219600726 24.129423774954628 33.26433000604961 58-59 17.2875332016296 20.33877477715917 28.724017657122875 33.64967436408836 60-61 17.16986482654315 17.56498723886946 29.06985537385386 36.19529256073353 62-63 17.193334026523996 20.337268765774024 28.103524874516733 34.365872333185244 64-65 17.453730835397092 21.513507382271207 26.87865096319262 34.154110819139085 66-67 15.050429620667163 32.42147252601828 18.547891597583916 33.980206255730636 68-69 16.11908971437756 30.689521504410557 18.61320424699108 34.5781845342208 70-71 14.99357229280097 32.18768905021174 17.176156987295826 35.64258166969147 72-73 13.637953361753613 36.8720047640203 15.603111737071451 33.88693013715463 74-75 16.727633631078973 25.91804905713881 20.106810340753345 37.247506971028876 76 16.605856664839216 22.90489063652003 21.413312664234265 39.075940034406486 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 1.0 15 1.0 16 0.5 17 1.0 18 1.0 19 2.0 20 7.5 21 12.0 22 15.5 23 20.0 24 26.5 25 32.0 26 36.5 27 59.5 28 95.5 29 113.0 30 138.0 31 204.5 32 299.0 33 352.0 34 434.0 35 579.5 36 715.5 37 788.0 38 860.5 39 1043.5 40 1303.0 41 1549.0 42 1646.0 43 1712.0 44 1871.5 45 1992.0 46 2019.0 47 2107.0 48 2178.5 49 2133.5 50 2105.0 51 2073.5 52 2015.0 53 1936.0 54 1884.0 55 1876.5 56 1842.5 57 1840.5 58 1865.0 59 1908.0 60 1925.5 61 1942.5 62 1985.0 63 1931.5 64 1849.5 65 1768.0 66 1655.5 67 1596.0 68 1558.0 69 1421.5 70 1218.0 71 1113.0 72 1023.0 73 883.5 74 752.5 75 671.0 76 616.0 77 486.5 78 350.0 79 288.0 80 242.0 81 157.0 82 98.0 83 78.0 84 61.5 85 36.0 86 21.0 87 15.0 88 9.5 89 2.5 90 2.5 91 2.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0018904306400998148 9 0.0018904306400998148 10-11 0.0018904306400998148 12-13 0.004726076600249537 14-15 9.452153200499074E-4 16-17 0.0037808612801996295 18-19 0.004726076600249537 20-21 9.452153200499074E-4 22-23 0.0018904306400998148 24-25 9.452153200499074E-4 26-27 9.452153200499074E-4 28-29 0.0028356459601497222 30-31 0.004726076600249537 32-33 0.0037808612801996295 34-35 0.0037808612801996295 36-37 0.0037808612801996295 38-39 0.0028356459601497222 40-41 0.004726076600249537 42-43 0.0028356459601497222 44-45 0.0056712919202994445 46-47 0.0028356459601497222 48-49 0.0037808612801996295 50-51 0.0018904306400998148 52-53 0.0037808612801996295 54-55 0.0018904306400998148 56-57 0.0037808612801996295 58-59 0.0028356459601497222 60-61 0.0056712919202994445 62-63 0.004726076600249537 64-65 0.0018904306400998148 66-67 0.004726076600249537 68-69 0.025520813641347503 70-71 0.0037808612801996295 72-73 0.0028356459601497222 74-75 9.452153200499074E-4 76 0.0018904306400998148 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 52898.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.48580286589285 #Duplication Level Percentage of deduplicated Percentage of total 1 99.53635085319044 99.0245377897085 2 0.4218447155398472 0.8393512042043176 3 0.03040322274161061 0.09074067072479111 4 0.011401208528103978 0.045370335362395556 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.007561722560399259 0.0 5 0.0 0.0 0.0 0.007561722560399259 0.0 6 0.0 0.0 0.0 0.007561722560399259 0.0 7 0.0 0.0 0.0 0.007561722560399259 0.0 8 0.0 0.0 0.0 0.009452153200499074 0.0 9 0.0 0.0 0.0 0.009452153200499074 0.0 10 0.0 0.0 0.0 0.011342583840598889 0.0 11 0.0 0.0 0.0 0.011342583840598889 0.0 12 0.0 0.0 0.0 0.015123445120798518 0.0 13 0.0 0.0 0.0 0.020794737041097962 0.0 14 0.0 0.0 0.0 0.024575598321297593 0.0 15 0.0 0.0 0.0 0.02835645960149722 0.0 16 0.0 0.0 0.0 0.03213732088169685 0.0 17 0.0 0.0 0.0 0.03213732088169685 0.0 18 0.0 0.0 0.0 0.03591818216189648 0.0 19 0.0 0.0 0.0 0.037808612801996294 0.0 20 0.0 0.0 0.0 0.037808612801996294 0.0 21 0.0 0.0 0.0 0.039699043442096106 0.0 22 0.0 0.0 0.0 0.051041627282695 0.0 23 0.0 0.0 0.0 0.05482248856289463 0.0 24 0.0 0.0 0.0 0.06049378048319407 0.0 25 0.0 0.0 0.0 0.07372679496389277 0.0 26 0.0 0.0 0.0 0.08128851752429203 0.0 27 0.0 0.0 0.0 0.1285492835267874 0.0 28 0.0 0.0 0.0 0.15879617376838442 0.0 29 0.0 0.0 0.0 0.19660478657038075 0.0 30 0.0 0.0 0.0 0.25142727513327534 0.0 31 0.0 0.0 0.0 0.276002873454573 0.0 32 0.0 0.0 0.0 0.3402775152179667 0.0 33 0.0 0.0 0.0 0.37997655866006275 0.0 34 0.0 0.0 0.0 0.4688267987447541 0.0 35 0.0 0.0 0.0 0.6351846950735377 0.0 36 0.0 0.0 0.0 0.8450224961246172 0.0 37 0.0 0.0 0.0 1.3100684335891717 0.0 38 0.0 0.0 0.0 1.73541532761163 0.0 39 0.0 0.0 0.0 2.223146432757382 0.0 40 0.0 0.0 0.0 2.712767968543234 0.0 41 0.0 0.0 0.0 3.111648833604295 0.0 42 0.0 0.0 0.0 3.519981851865855 0.0 43 0.0 0.0 0.0 3.9472191765284133 0.0 44 0.0 0.0 0.0 4.446292865514764 0.0 45 0.0 0.0 0.0 4.729857461529736 0.0 46 0.0 0.0 0.0 5.0984914363492 0.0018904306400998148 47 0.0 0.0 0.0 5.453892396687966 0.0018904306400998148 48 0.0 0.0 0.0 5.7336761314227385 0.0018904306400998148 49 0.0 0.0 0.0 5.992665129116412 0.0018904306400998148 50 0.0 0.0 0.0 6.33105221369428 0.0018904306400998148 51 0.0 0.0 0.0 6.758289538356838 0.0018904306400998148 52 0.0 0.0 0.0 7.0267306892510115 0.0018904306400998148 53 0.0 0.0 0.0 7.391583802790276 0.0018904306400998148 54 0.0 0.0 0.0 7.6770388294453475 0.0018904306400998148 55 0.0 0.0 0.0 7.947370410979621 0.0018904306400998148 56 0.0 0.0 0.0 8.1761125184317 0.0018904306400998148 57 0.0 0.0 0.0 8.406745056523876 0.0018904306400998148 58 0.0 0.0 0.0 8.654391470376952 0.0018904306400998148 59 0.0 0.0 0.0 8.869900563348331 0.0018904306400998148 60 0.0 0.0 0.0 8.98899769367462 0.0018904306400998148 61 0.0 0.0 0.0 9.161026881923702 0.0018904306400998148 62 0.0 0.0 0.0 9.268781428409392 0.0018904306400998148 63 0.0 0.0 0.0 9.38031683617528 0.0018904306400998148 64 0.0 0.0 0.0 9.518318272902567 0.0018904306400998148 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGAT 20 7.862632E-5 69.99338 37 TCTTGGT 35 3.6252459E-9 69.99338 43 TAACGCT 25 2.80522E-6 69.99338 13 CTTGGTG 35 3.6252459E-9 69.99338 44 ATGTATA 20 7.862632E-5 69.99338 28 ATCTTGG 25 2.80522E-6 69.99338 42 TGCCTAC 75 0.0 69.99338 19 CGTAACA 20 7.862632E-5 69.99338 56 GTGGTAG 40 1.3096724E-10 69.99338 48 AAGTGTA 25 2.80522E-6 69.99338 34 AGATCTT 15 0.0022139775 69.99337 40 CTCCGTA 15 0.0022139775 69.99337 53 TTAGACT 15 0.0022139775 69.99337 38 ACCGACG 15 0.0022139775 69.99337 20 ATATGTG 15 0.0022139775 69.99337 32 ATATGTA 15 0.0022139775 69.99337 26 GTCTAGA 15 0.0022139775 69.99337 36 CAATTAT 15 0.0022139775 69.99337 56 GCCATAT 15 0.0022139775 69.99337 23 GCCGAAA 15 0.0022139775 69.99337 23 >>END_MODULE