##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779726_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 52898 Sequences flagged as poor quality 0 Sequence length 76 %GC 51 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.65730273356271 34.0 34.0 34.0 34.0 34.0 2 33.634334001285495 34.0 34.0 34.0 34.0 34.0 3 33.655847101969826 34.0 34.0 34.0 34.0 34.0 4 33.708079700555786 34.0 34.0 34.0 34.0 34.0 5 33.722428069114144 34.0 34.0 34.0 34.0 34.0 6 37.39846497032024 38.0 38.0 38.0 37.0 38.0 7 37.408295209648756 38.0 38.0 38.0 37.0 38.0 8 37.30052175885667 38.0 38.0 38.0 36.0 38.0 9 37.32182691217059 38.0 38.0 38.0 37.0 38.0 10-11 37.19263488222617 38.0 38.0 38.0 36.0 38.0 12-13 37.20217210480547 38.0 38.0 38.0 36.0 38.0 14-15 37.222853416008164 38.0 38.0 38.0 36.0 38.0 16-17 37.08005028545503 38.0 38.0 38.0 35.5 38.0 18-19 37.0473741918409 38.0 38.0 38.0 35.0 38.0 20-21 37.11703656092858 38.0 38.0 38.0 35.5 38.0 22-23 37.13529812091194 38.0 38.0 38.0 36.0 38.0 24-25 36.999499035880376 38.0 38.0 38.0 35.0 38.0 26-27 36.86382282884041 38.0 37.5 38.0 34.5 38.0 28-29 36.70969601875307 38.0 37.0 38.0 34.0 38.0 30-31 36.47017845665242 38.0 37.0 38.0 34.0 38.0 32-33 36.2992079095618 38.0 37.0 38.0 34.0 38.0 34-35 36.03145676585126 38.0 37.0 38.0 33.0 38.0 36-37 36.30894362735831 38.0 37.0 38.0 34.0 38.0 38-39 33.81657151499111 37.0 34.0 38.0 24.0 38.0 40-41 35.88496729554993 37.5 36.5 38.0 32.5 38.0 42-43 36.76798744754055 38.0 37.0 38.0 34.5 38.0 44-45 36.80394343831525 38.0 37.0 38.0 34.5 38.0 46-47 36.84720594351393 38.0 37.0 38.0 35.0 38.0 48-49 36.765633861393624 38.0 37.0 38.0 34.5 38.0 50-51 36.570607584407725 38.0 37.0 38.0 34.0 38.0 52-53 36.57264924949904 38.0 37.0 38.0 34.0 38.0 54-55 36.597508412416346 38.0 37.0 38.0 34.0 38.0 56-57 36.57470981889675 38.0 37.0 38.0 34.0 38.0 58-59 36.36139362546788 38.0 37.0 38.0 34.0 38.0 60-61 36.367991228401834 38.0 37.0 38.0 34.0 38.0 62-63 36.48728685394533 38.0 37.0 38.0 34.0 38.0 64-65 36.564057242239784 38.0 37.0 38.0 34.0 38.0 66-67 36.3465631970963 38.0 37.0 38.0 34.0 38.0 68-69 35.81874551022723 38.0 36.5 38.0 31.0 38.0 70-71 31.951207985179025 36.0 29.0 38.0 19.0 38.0 72-73 25.466208552308217 24.0 11.0 38.0 10.0 38.0 74-75 24.68787099701312 23.5 11.0 38.0 11.0 38.0 76 24.492476086052402 24.0 11.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 3.0 22 2.0 23 8.0 24 19.0 25 44.0 26 91.0 27 193.0 28 278.0 29 502.0 30 758.0 31 1336.0 32 2053.0 33 3260.0 34 5830.0 35 14335.0 36 11833.0 37 12350.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.225679609815117 6.508752693863662 11.42009149684298 62.84547619947824 2 10.737646035766947 6.113652690082801 62.716926915951454 20.431774358198798 3 10.826496275851639 8.592007259253657 62.412567582895385 18.168928881999317 4 8.57121252221256 50.14745358992778 21.592498771220082 19.68883511663957 5 9.420015879617377 20.473363832280995 59.126999130401906 10.979621157699725 6 17.252070021550907 58.70543309765964 11.079813981625014 12.96268289916443 7 15.165034594880714 18.05172218231313 9.811335022118039 56.97190820068811 8 13.030738402208023 59.96824076524633 7.264924949903588 19.736095882642065 9 10.949374267458127 13.792581950168248 5.397179477484971 69.86086430488866 10-11 14.516616885326478 34.521153918862716 30.646716321978147 20.31551287383266 12-13 13.712238647964007 7.610873757041854 36.268857045634995 42.40803054935915 14-15 14.493931717645282 6.22613331316874 11.52217475140837 67.7577602177776 16-17 40.70097168134901 29.945366554501113 5.553140005293206 23.800521758856668 18-19 42.04884872774018 12.340731218571591 5.536126129532307 40.074293924155924 20-21 16.51574728723203 7.3792960036296265 5.649551967938296 70.45540474120004 22-23 15.663163068547014 32.98990510038187 5.334795266361677 46.01213656470944 24-25 41.28133388785965 33.14113955158985 5.227040719875988 20.350485840674505 26-27 41.866422170970544 36.89553480282808 6.518204847064162 14.719838179137207 28-29 15.687738666868311 36.61953192937351 7.199705092820144 40.49302431093803 30-31 13.066656584369921 13.15267117849446 32.61654504896215 41.16412718817347 32-33 13.538319029074824 32.049415856932214 10.41060153502968 44.00166357896329 34-35 14.233997504631555 9.854814926840334 32.6912170592461 43.219970509282014 36-37 38.542099890355026 29.461416310635563 11.170554652349805 20.825929146659607 38-39 16.10552383833037 11.84354796022534 33.36893644372188 38.681991757722415 40-41 13.537373813754774 6.216681159968241 37.14979772392151 43.096147302355476 42-43 38.64040228364021 6.598548149268403 35.44179364059133 19.319255926500055 44-45 14.889031721426141 31.709138341714244 38.55722333547582 14.844606601383795 46-47 37.8199553858369 8.596733335853909 15.8162879503951 37.7670233279141 48-49 36.738629059699804 6.370751257136376 10.899277855495482 45.99134182766834 50-51 15.577148474422472 7.0040455215698145 36.89648001814814 40.52232598585958 52-53 10.72252259064615 6.797988581798934 62.2386479640062 20.24084086354872 54-55 10.80948240009074 6.687398389353094 42.007259253657985 40.49585995689819 56-57 36.18662331279066 6.780974706038036 16.885326477371546 40.14707550379977 58-59 14.095996067904268 8.938901281711974 57.623161556202504 19.341941094181255 60-61 36.16015728382926 34.100533101440504 15.935385080721387 13.803924534008846 62-63 12.158304661801958 66.43823963098794 7.157170403417899 14.246285303792202 64-65 9.669552724110552 69.46292865514764 6.614616809709252 14.252901811032553 66-67 10.042912775530265 69.72947937540171 6.259215849370486 13.96839199969753 68-69 10.054255359370865 69.67182124087867 6.440697190820069 13.833226208930395 70-71 10.450300578471776 64.78127717494046 8.095769216227456 16.672653030360316 72-73 11.395515898521683 51.24390336118568 13.012779311127073 24.347801429165564 74-75 12.371923324133236 45.09905856554123 15.50720254073878 27.021815569586753 76 12.416348444175583 45.14159325494347 15.361639381451095 27.080418919429842 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.5 17 1.0 18 0.5 19 0.5 20 1.0 21 1.0 22 4.0 23 5.5 24 4.0 25 4.0 26 3.0 27 7.0 28 12.5 29 13.0 30 13.0 31 18.0 32 31.0 33 39.0 34 38.0 35 38.0 36 46.5 37 54.0 38 64.0 39 249.0 40 4685.5 41 9488.0 42 10029.0 43 8693.0 44 5737.0 45 2997.0 46 1877.0 47 1294.5 48 504.0 49 246.5 50 197.0 51 165.0 52 163.0 53 205.0 54 217.0 55 293.5 56 420.5 57 543.5 58 616.0 59 757.5 60 954.5 61 1081.0 62 1152.0 63 1227.5 64 1295.0 65 1276.0 66 1239.0 67 1213.0 68 1204.5 69 1164.0 70 1101.0 71 1070.0 72 993.5 73 880.5 74 814.5 75 785.0 76 729.0 77 634.5 78 506.0 79 416.0 80 348.5 81 248.0 82 198.0 83 181.0 84 133.5 85 73.0 86 41.0 87 22.0 88 15.5 89 7.5 90 3.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 52898.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.5151423494272 #Duplication Level Percentage of deduplicated Percentage of total 1 63.132547973623765 16.10835948429052 2 22.88656738534489 11.679080494536656 3 8.772319774764762 6.714809633634541 4 3.2377565384900353 3.3044727588944762 5 0.9705860561606282 1.2382320692653788 6 0.288953100689042 0.44236076978335664 7 0.11113580795732383 0.19849521721048055 8 0.05927243091057272 0.12098756096638814 9 0.037045269319107954 0.08506937880449167 >10 0.34081647773579316 1.8885402094597148 >50 0.02963621545528636 0.5179779953873492 >100 0.08890864636585907 4.8773110514575215 >500 0.02222716159146477 4.039850277893304 >1k 0.01481810772764318 7.54659911527846 >5k 0.0 0.0 >10k+ 0.00740905386382159 41.237853983137356 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 21814 41.237853983137356 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 2516 4.756323490491134 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 1476 2.7902756247873266 No Hit ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT 812 1.5350296797610496 RNA PCR Primer, Index 42 (95% over 22bp) TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 709 1.3403153238307688 No Hit CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 616 1.1645052743014859 RNA PCR Primer, Index 32 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT 485 0.9168588604484101 No Hit CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 371 0.7013497674770313 No Hit CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 246 0.46504593746455447 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC 236 0.44614163106355625 No Hit TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC 193 0.36485311353926425 RNA PCR Primer, Index 32 (95% over 21bp) CTTAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 180 0.3402775152179667 No Hit TATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCT 179 0.3383870845778668 RNA PCR Primer, Index 42 (95% over 21bp) CTTATACACATCTCCGAGCCCACGAGACATCACTCGAACTCGTATGCCGT 164 0.3100306249763696 No Hit TCTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCG 162 0.30624976369617 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGAGCTCGTATGCCGT 135 0.255208136413475 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACTCGATATCGTATGCCGT 128 0.2419751219327763 No Hit CTTATACACATCTCCGAGCCCACGAGACATCACCCGATCTCGTATGCCGT 101 0.19093349465008128 No Hit CCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 80 0.15123445120798518 No Hit TCTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT 79 0.14934402056788537 No Hit CTTATACACATCTCCGAGCCCACGAGACATCCCTCGATCTCGTATGCCGT 62 0.11720669968618852 No Hit CTCTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG 53 0.10019282392529018 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.007561722560399259 0.0 5 0.0 0.0 0.0 0.007561722560399259 0.0 6 0.0 0.0 0.0 0.007561722560399259 0.0 7 0.0 0.0 0.0 0.007561722560399259 0.0 8 0.0 0.0 0.0 0.009452153200499074 0.0 9 0.0 0.0 0.0 0.009452153200499074 0.0 10 0.0 0.0 0.0 0.013233014480698703 0.0 11 0.0 0.0 0.0 0.013233014480698703 0.0 12 0.0 0.0 0.0 0.013233014480698703 0.0 13 0.0 0.0 0.0 0.022685167681197778 0.0 14 0.0 0.0 0.0 0.022685167681197778 0.0 15 0.0 0.0 0.0 0.02835645960149722 0.0 16 0.0 0.0 0.0 0.03402775152179666 0.0 17 0.0 0.0 0.0 0.03402775152179666 0.0 18 0.0 0.0018904306400998148 0.0 0.039699043442096106 0.0 19 0.0 0.0018904306400998148 0.0 0.04347990472229574 0.0 20 0.0 0.0018904306400998148 0.0 0.04347990472229574 0.0 21 0.0 0.0018904306400998148 0.0 0.04726076600249537 0.0 22 0.0 0.0018904306400998148 0.0 0.05860334984309426 0.0 23 0.0 0.0018904306400998148 0.0 0.07183636432379296 0.0 24 0.0 0.0018904306400998148 0.0 0.07183636432379296 0.0 25 0.0 0.0018904306400998148 0.0 0.08506937880449167 0.0 26 0.0 0.0018904306400998148 0.0 0.09263110136489092 0.0 27 0.0 0.0018904306400998148 0.0 0.1682483269688835 0.0 28 0.0 0.0018904306400998148 0.0 0.20794737041097963 0.0 29 0.0 0.0018904306400998148 0.0 0.31381148625656924 0.0 30 0.0 0.0018904306400998148 0.0 0.39131914250066163 0.0 31 0.0 0.0018904306400998148 0.0 0.4763885213051533 0.0 32 0.0 0.0018904306400998148 0.0 0.5784717758705433 0.0 33 0.0 0.0018904306400998148 0.0 0.7070210593973307 0.0 34 0.0 0.0018904306400998148 0.0 0.9452153200499074 0.0 35 0.0 0.0018904306400998148 0.0 1.2268894854247798 0.0 36 0.0 0.0018904306400998148 0.0 1.7807856629740255 0.0 37 0.0 0.0018904306400998148 0.0 2.5275057658134523 0.0 38 0.0 0.0018904306400998148 0.0 3.3044727588944762 0.0 39 0.0 0.0018904306400998148 0.0 4.056864153654202 0.0 40 0.0 0.0018904306400998148 0.0 4.813036409694129 0.0 41 0.0 0.0018904306400998148 0.0 5.427426367726568 0.0 42 0.0 0.0018904306400998148 0.0 6.034254603198609 0.0 43 0.0 0.0018904306400998148 0.0 6.667548867632046 0.0 44 0.0 0.0018904306400998148 0.0 7.367008204468978 0.0 45 0.0 0.0018904306400998148 0.0 7.996521607622216 0.0 46 0.0 0.0018904306400998148 0.0 8.643048886536352 0.0 47 0.0 0.0018904306400998148 0.0 9.212068509206397 0.0 48 0.0 0.0018904306400998148 0.0 9.714923059472948 0.0 49 0.0 0.0018904306400998148 0.0 10.178078566297403 0.0 50 0.0 0.0018904306400998148 0.0 10.626110628001058 0.0 51 0.0 0.0018904306400998148 0.0 11.12896517826761 0.0 52 0.0 0.0018904306400998148 0.0 11.493818291806873 0.0 53 0.0 0.0018904306400998148 0.0 11.870013989186736 0.0 54 0.0 0.0018904306400998148 0.0 12.180044614163107 0.0 55 0.0 0.0018904306400998148 0.0 12.609172369465764 0.0 56 0.0 0.0018904306400998148 0.0 12.96268289916443 0.0 57 0.0 0.0018904306400998148 0.0 13.323755151423494 0.0 58 0.0 0.0018904306400998148 0.0 13.713183863284057 0.0 59 0.0 0.0018904306400998148 0.0 14.038337933381225 0.0 60 0.0 0.0018904306400998148 0.0 14.323792960036297 0.0 61 0.0 0.0018904306400998148 0.0 14.662180044614162 0.0 62 0.0 0.0018904306400998148 0.0 14.964648947030133 0.0 63 0.0 0.0018904306400998148 0.0 15.227418806004009 0.0 64 0.0 0.0018904306400998148 0.0 15.51476426329918 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATATC 20 7.858949E-5 70.0 35 AATCTAA 20 7.858949E-5 70.0 70 TCGATAT 20 7.858949E-5 70.0 34 GATATCG 20 7.858949E-5 70.0 36 TATCGTA 20 7.858949E-5 70.0 38 GAAAAAC 15 0.0022131465 70.0 60 GCTCGTA 25 2.8036447E-6 70.0 38 AACAGAA 15 0.0022131465 70.0 70 TTTACAC 40 1.3096724E-10 70.0 2 ATATCGT 20 7.858949E-5 70.0 37 AATAAAC 15 0.0022131465 70.0 70 TCTTAAT 30 1.0054828E-7 70.0 1 CTCGATA 20 7.858949E-5 70.0 33 TCTTTAT 90 0.0 66.11111 1 ATCGTAT 35 2.921588E-7 60.0 39 AAACAGA 30 8.270461E-6 58.333332 69 TTTATAC 110 0.0 57.272724 3 CTTTATA 105 0.0 56.66667 2 AAATCTA 25 2.3701537E-4 55.999996 69 AACAAAT 20 0.0069155786 52.5 70 >>END_MODULE