##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779725_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 51981 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.861256997749177 23.0 12.0 32.0 12.0 34.0 2 22.698851503433946 23.0 12.0 32.0 12.0 34.0 3 22.64213847367307 23.0 11.0 32.0 11.0 34.0 4 22.037513706931378 23.0 12.0 32.0 11.0 34.0 5 22.535041649833595 23.0 11.0 32.0 11.0 34.0 6 23.10045978338239 24.0 11.0 34.0 11.0 37.0 7 24.180238933456454 26.0 12.0 34.0 12.0 38.0 8 23.229853215598006 25.0 11.0 34.0 11.0 38.0 9 24.930493834285603 26.0 12.0 35.0 12.0 38.0 10-11 23.862190030972855 26.0 11.0 34.0 11.0 38.0 12-13 24.400819530212964 26.5 11.0 35.0 11.0 38.0 14-15 22.996633385275388 23.5 11.0 34.0 11.0 37.5 16-17 23.219868798214733 24.5 11.0 33.5 11.0 37.5 18-19 23.60686597025836 25.5 11.5 34.0 11.0 38.0 20-21 22.83044766356938 23.0 11.0 33.5 11.0 37.0 22-23 23.070208345356956 24.5 11.0 32.5 11.0 37.5 24-25 22.90102152709644 23.0 11.0 34.0 11.0 37.5 26-27 22.28077566803255 22.5 11.0 32.5 10.0 37.0 28-29 22.66440622535157 22.5 11.0 34.0 11.0 38.0 30-31 23.07925011061734 23.0 11.0 34.0 11.0 38.0 32-33 23.30119659106212 23.0 11.0 34.0 11.0 38.0 34-35 23.393249456532196 23.5 11.0 34.0 11.0 38.0 36-37 23.061435909274543 23.5 11.0 34.0 11.0 37.0 38-39 23.286094919297437 24.5 11.0 33.5 11.0 37.0 40-41 22.251688116811913 22.5 11.0 33.0 11.0 37.0 42-43 22.640493641907618 23.0 11.0 33.5 11.0 37.5 44-45 23.39239337450222 25.0 11.0 34.0 11.0 38.0 46-47 23.08619495584925 24.0 11.0 34.0 11.0 37.5 48-49 22.360785671687733 22.5 11.0 33.5 11.0 37.0 50-51 21.980685250379945 22.5 11.0 31.0 11.0 37.0 52-53 22.311546526615494 22.5 11.0 33.5 11.0 37.5 54-55 22.298945768646234 23.0 11.0 32.5 11.0 37.5 56-57 22.564167676651085 22.5 11.0 33.5 11.0 37.5 58-59 22.694397953098246 23.0 11.0 34.0 11.0 38.0 60-61 23.25798849579654 23.0 11.0 34.0 11.0 38.0 62-63 23.332698485985265 23.5 11.0 34.0 11.0 38.0 64-65 23.259710278755698 23.5 11.0 34.0 11.0 38.0 66-67 22.825878686443126 23.5 11.0 34.0 11.0 37.5 68-69 22.494382562859506 23.0 11.0 34.0 11.0 37.0 70-71 22.48826494295993 23.0 11.0 33.5 11.0 37.0 72-73 22.314576479867647 23.0 11.0 31.5 11.0 37.0 74-75 21.934331775071662 21.5 11.0 32.5 11.0 37.0 76 21.615032415690347 21.0 11.0 32.0 11.0 37.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 1.0 4 2.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 18.0 12 77.0 13 394.0 14 1040.0 15 1889.0 16 3048.0 17 4584.0 18 5838.0 19 6196.0 20 5159.0 21 3733.0 22 2705.0 23 1780.0 24 1359.0 25 989.0 26 826.0 27 749.0 28 770.0 29 774.0 30 812.0 31 895.0 32 1005.0 33 1247.0 34 1576.0 35 1902.0 36 1748.0 37 865.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.804851772763126 15.771147149920164 18.02196956580289 42.40203151151382 2 12.06979473269079 13.803120370904754 52.321040380138896 21.80604451626556 3 12.037090475366 13.379888805525095 52.563436640310876 22.019584078798022 4 11.810084453935092 25.75941209288009 25.343875646870973 37.08662780631384 5 11.277197437525249 20.31896269790885 47.86171870491141 20.54212115965449 6 17.898847655874263 36.09780496719955 17.731478809565033 28.271868567361153 7 17.537177045458918 19.984225005290394 19.199322829495394 43.2792751197553 8 14.740851898880294 35.13217130324368 18.79256608565162 31.334410712224404 9 14.715841317480471 14.912078186925237 19.110008080341682 51.262072415252604 10-11 16.961820752811256 22.396760198928405 30.973383225756802 29.668035822503537 12-13 15.647004501904652 14.859171187810228 37.00219323559968 32.49163107468544 14-15 23.470506752856977 22.245950209704105 22.61437531263227 31.669167724806652 16-17 29.247951056216092 15.780714917849858 21.786140290122745 33.1851937358113 18-19 16.063526876755553 15.389203124398785 32.83119781445996 35.7160721843857 20-21 29.58213894072606 15.080128513438119 23.15742896169607 32.18030358413975 22-23 31.552772326753626 13.74331447920274 21.2686136442341 33.435299549809535 24-25 17.229404748162686 23.711955057909115 20.625072145907883 38.43356804802032 26-27 28.145020104272877 22.19742588352989 21.745320225475673 27.912233786721565 28-29 19.883412212859287 21.10989264688907 24.689291623379123 34.317403516872524 30-31 18.33931336995104 21.613744144213474 26.42919668709178 33.61774579874371 32-33 20.626034091346337 19.019585209126937 26.513140174689294 33.84124052483743 34-35 19.40225285454563 19.44361611050723 26.180055215137028 34.97407581981011 36-37 28.223479164261807 13.641348262726538 32.00681057370426 26.128361999307398 38-39 28.185963292162068 10.86613567278464 38.32198237715957 22.625918657893724 40-41 22.451060555047857 24.62604011351065 23.8410850848925 29.081814246548987 42-43 14.401423692944062 25.19647924582752 29.18762926266173 31.214467798566687 44-45 15.341253426963592 16.217594151315474 33.831946515319125 34.609205906401804 46-47 27.769440917311172 14.864942860440955 26.137019508253488 31.228596713994385 48-49 26.14567701719959 15.321866943706953 31.79710646812113 26.735349570972332 50-51 42.11260424983407 12.716796367728964 23.294246659676595 21.876352722760373 52-53 14.959357414265789 18.889904285508152 32.4255687557116 33.72516954451446 54-55 26.111046981415214 15.916349224671977 25.385740120820348 32.586863673092466 56-57 25.770270400261648 16.793481920409402 24.34179516530873 33.09445251402022 58-59 15.589137816597248 20.725877045316814 30.710774647209902 32.97421049087603 60-61 15.295079601750757 18.16170458371411 30.366985714972827 36.17623009956231 62-63 15.120820347069913 21.56489283927816 29.589441686867524 33.72484512678441 64-65 15.253422087978683 23.04318131535154 28.74842482949681 32.954971767172964 66-67 12.793997402722331 35.63945938146313 18.98994757346929 32.57659564234525 68-69 13.911554152875066 33.305750134708646 19.52120698945424 33.26148872296205 70-71 12.942975874408402 34.749317018738694 17.968178844895917 34.33952826195698 72-73 11.603947824079418 39.845703951671865 16.38481665319943 32.165531571049286 74-75 14.892839278156142 26.928700604101735 21.80153141713802 36.3769287006041 76 14.710069644849744 24.433414136750166 23.61576051406364 37.24075570433645 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.0 6 1.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 0.5 15 0.5 16 1.0 17 2.0 18 2.0 19 4.0 20 10.5 21 15.0 22 24.0 23 34.0 24 54.5 25 74.0 26 85.0 27 112.0 28 159.5 29 191.0 30 244.0 31 338.0 32 418.5 33 458.0 34 564.5 35 763.5 36 961.5 37 1067.0 38 1163.5 39 1371.5 40 1619.0 41 1838.5 42 1922.0 43 2030.0 44 2262.0 45 2426.0 46 2466.0 47 2485.0 48 2480.0 49 2410.5 50 2365.0 51 2328.5 52 2220.0 53 2126.0 54 2104.0 55 1997.0 56 1837.5 57 1764.0 58 1743.0 59 1698.5 60 1582.5 61 1457.0 62 1403.0 63 1398.0 64 1367.0 65 1253.0 66 1140.0 67 1115.0 68 1053.0 69 902.5 70 790.0 71 766.0 72 703.5 73 607.5 74 505.0 75 436.0 76 392.5 77 324.5 78 248.5 79 197.0 80 155.0 81 99.5 82 66.0 83 46.0 84 41.5 85 27.0 86 15.5 87 14.0 88 9.5 89 3.0 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.005771339527904426 9 0.005771339527904426 10-11 0.004809449606587022 12-13 0.005771339527904426 14-15 0.005771339527904426 16-17 0.005771339527904426 18-19 0.005771339527904426 20-21 0.003847559685269618 22-23 0.005771339527904426 24-25 0.005771339527904426 26-27 0.003847559685269618 28-29 0.005771339527904426 30-31 0.004809449606587022 32-33 0.005771339527904426 34-35 0.004809449606587022 36-37 0.005771339527904426 38-39 0.005771339527904426 40-41 0.006733229449221832 42-43 0.006733229449221832 44-45 0.006733229449221832 46-47 0.005771339527904426 48-49 0.005771339527904426 50-51 0.004809449606587022 52-53 0.006733229449221832 54-55 0.005771339527904426 56-57 0.004809449606587022 58-59 0.004809449606587022 60-61 0.006733229449221832 62-63 0.005771339527904426 64-65 0.004809449606587022 66-67 0.006733229449221832 68-69 0.03270425732479175 70-71 0.005771339527904426 72-73 0.005771339527904426 74-75 0.005771339527904426 76 0.005771339527904426 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 51981.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.55945441603663 #Duplication Level Percentage of deduplicated Percentage of total 1 99.61740609058587 99.17854600719494 2 0.33235430514762715 0.6617802658663743 3 0.04057814190755912 0.12119813008599296 4 0.009661462358942649 0.03847559685269618 5 0.0 0.0 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.003847559685269618 0.0 5 0.0 0.0 0.0 0.007695119370539236 0.0 6 0.0 0.0 0.0 0.007695119370539236 0.0 7 0.0 0.0 0.0 0.007695119370539236 0.0 8 0.0 0.0 0.0 0.007695119370539236 0.0 9 0.0 0.0 0.0 0.009618899213174045 0.0 10 0.0 0.0 0.0 0.011542679055808852 0.0 11 0.0 0.0 0.0 0.01923779842634809 0.0 12 0.0 0.0 0.0 0.01923779842634809 0.0 13 0.0 0.0 0.0 0.01923779842634809 0.0 14 0.0 0.0 0.0 0.023085358111617705 0.0 15 0.0 0.0 0.0 0.025009137954252515 0.0 16 0.0 0.0 0.0 0.025009137954252515 0.0 17 0.0 0.0 0.0 0.025009137954252515 0.0 18 0.0 0.0 0.0 0.026932917796887324 0.0 19 0.0 0.0 0.0 0.03270425732479175 0.0 20 0.0 0.0 0.0 0.03270425732479175 0.0 21 0.0 0.0 0.0 0.03462803716742656 0.0 22 0.0 0.0 0.0 0.06925607433485312 0.0 23 0.0 0.0 0.0 0.06925607433485312 0.0 24 0.0 0.0 0.0 0.0865700929185664 0.0 25 0.0 0.0 0.0 0.09041765260383601 0.0 26 0.0 0.0 0.0 0.09618899213174044 0.0 27 0.0 0.0 0.0 0.1327408091418018 0.0 28 0.0 0.0 0.0 0.14813104788288028 0.0 29 0.0 0.0 0.0 0.17891152536503724 0.0 30 0.0 0.0 0.0 0.20776822300455935 0.0 31 0.0 0.0 0.0 0.22700602143090745 0.0 32 0.0 0.0 0.0 0.2981858756083954 0.0 33 0.0 0.0 0.0 0.35397549104480486 0.0 34 0.0 0.0 0.0 0.4174602258517535 0.0 35 0.0 0.0 0.0 0.5309632365672072 0.0 36 0.0 0.0 0.0 0.6290760085415825 0.0 37 0.0 0.0 0.0 0.8310728920182374 0.0 38 0.0 0.0 0.0 1.0523075739212404 0.0 39 0.0 0.0 0.0 1.2831611550374176 0.0 40 0.0 0.0 0.0 1.5371000942652122 0.0 41 0.0 0.0 0.0 1.7948865931782767 0.0 42 0.0 0.0 0.0 1.994959696812297 0.0 43 0.0 0.0 0.0 2.237355956984283 0.0 44 0.0 0.0 0.0 2.4566668590446508 0.0 45 0.0 0.0 0.0 2.5624747503895655 0.0 46 0.0 0.0 0.0 2.7548527346530465 0.0 47 0.0 0.0 0.0 2.96839229718551 0.0 48 0.0 0.0 0.0 3.1145995652257557 0.0 49 0.0 0.0 0.0 3.2781208518497142 0.0 50 0.0 0.0 0.0 3.4955079740674475 0.0 51 0.0 0.0 0.0 3.685962178488294 0.0 52 0.0 0.0 0.0 3.8744926030665052 0.0 53 0.0 0.0 0.0 4.074565706700525 0.0 54 0.0 0.0 0.0 4.261172351436102 0.0 55 0.0 0.0 0.0 4.418922298532156 0.0 56 0.0 0.0 0.0 4.561282006887132 0.0 57 0.0 0.0 0.0 4.657470999018872 0.0 58 0.0 0.0 0.0 4.772897789576961 0.0 59 0.0 0.0 0.0 4.909486158404032 0.0 60 0.0 0.0 0.0 5.013370269906312 0.0 61 0.0 0.0 0.0 5.1057117023527825 0.0 62 0.0 0.0 0.0 5.173043996845001 0.0 63 0.0 0.0 0.0 5.273080548662011 0.0 64 0.0 0.0 0.0 5.348107962524769 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAGAC 15 0.0022128 70.00097 37 ATCTAGG 25 2.8027025E-6 70.00097 42 GCTGGTT 15 0.0022128 70.00097 47 TTGTCGC 25 2.8027025E-6 70.00097 49 CCGTGGT 25 2.8027025E-6 70.00097 46 TAACGTG 15 0.0022128 70.00097 32 GCGTTTA 15 0.0022128 70.00097 34 TAGCCGT 15 0.0022128 70.00097 52 CATTACA 25 2.8027025E-6 70.00097 61 TATTGGT 15 0.0022128 70.00097 43 GTGTGGA 25 2.8027025E-6 70.00097 36 TTAAGGT 25 2.8027025E-6 70.00097 43 GTGTATC 15 0.0022128 70.00097 36 AGATTTC 15 0.0022128 70.00097 40 CTCTGTG 25 2.8027025E-6 70.00097 44 TCATAAA 15 0.0022128 70.00097 64 TAGTGTA 25 2.8027025E-6 70.00097 34 ATTTGTA 15 0.0022128 70.00097 34 GCGTCAG 15 0.0022128 70.00097 48 TACCGCT 15 0.0022128 70.00097 13 >>END_MODULE