##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779724_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 127703 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.67244309060868 34.0 34.0 34.0 34.0 34.0 2 33.67862931959312 34.0 34.0 34.0 34.0 34.0 3 33.69560621128713 34.0 34.0 34.0 34.0 34.0 4 33.71955239892563 34.0 34.0 34.0 34.0 34.0 5 33.71698393929665 34.0 34.0 34.0 34.0 34.0 6 37.39161961739348 38.0 38.0 38.0 37.0 38.0 7 37.38241858061283 38.0 38.0 38.0 37.0 38.0 8 37.27868570041424 38.0 38.0 38.0 36.0 38.0 9 37.28527129354831 38.0 38.0 38.0 36.0 38.0 10-11 37.20633031330509 38.0 38.0 38.0 36.0 38.0 12-13 37.1797765126896 38.0 38.0 38.0 36.0 38.0 14-15 37.20579391243746 38.0 38.0 38.0 36.0 38.0 16-17 37.167509768760326 38.0 38.0 38.0 36.0 38.0 18-19 37.16052089614183 38.0 38.0 38.0 36.0 38.0 20-21 37.179361487200765 38.0 38.0 38.0 36.0 38.0 22-23 37.14228326664213 38.0 38.0 38.0 36.0 38.0 24-25 37.115686397343836 38.0 38.0 38.0 36.0 38.0 26-27 37.04039059379967 38.0 38.0 38.0 35.5 38.0 28-29 37.01184780310564 38.0 38.0 38.0 35.5 38.0 30-31 36.912691949288586 38.0 38.0 38.0 35.5 38.0 32-33 36.891138031213046 38.0 38.0 38.0 35.0 38.0 34-35 36.78689224215562 38.0 37.0 38.0 34.5 38.0 36-37 36.85501906768047 38.0 37.0 38.0 35.0 38.0 38-39 36.128877160285974 38.0 37.0 38.0 34.0 38.0 40-41 36.719853879705255 38.0 37.0 38.0 34.5 38.0 42-43 36.96654737946642 38.0 37.5 38.0 35.0 38.0 44-45 36.97118705120475 38.0 38.0 38.0 35.0 38.0 46-47 36.98908404657682 38.0 38.0 38.0 35.5 38.0 48-49 36.969476049897025 38.0 38.0 38.0 35.5 38.0 50-51 36.918987807647426 38.0 38.0 38.0 35.0 38.0 52-53 36.884767781493 38.0 38.0 38.0 35.0 38.0 54-55 36.8918741141555 38.0 38.0 38.0 35.0 38.0 56-57 36.91115322271207 38.0 38.0 38.0 35.0 38.0 58-59 36.821413749089686 38.0 37.0 38.0 35.0 38.0 60-61 36.87129902978003 38.0 37.5 38.0 35.0 38.0 62-63 36.88821719145204 38.0 38.0 38.0 35.0 38.0 64-65 36.92459456708143 38.0 38.0 38.0 35.0 38.0 66-67 36.8469926313399 38.0 38.0 38.0 35.0 38.0 68-69 36.65422503778298 38.0 37.5 38.0 34.0 38.0 70-71 35.33457318935342 38.0 36.5 38.0 28.5 38.0 72-73 33.24607096152792 38.0 34.0 38.0 16.0 38.0 74-75 33.007540934825336 38.0 34.0 38.0 11.0 38.0 76 32.62115220472503 38.0 32.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 4.0 22 6.0 23 20.0 24 34.0 25 80.0 26 111.0 27 223.0 28 396.0 29 673.0 30 1065.0 31 1769.0 32 2723.0 33 4515.0 34 7714.0 35 16964.0 36 20852.0 37 70553.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.35153441970823 14.388855391024485 10.465689921145158 38.79392026812213 2 19.80376341981003 14.916642522102064 41.08360805932516 24.195985998762755 3 18.17498414289406 17.187536706263753 38.34913823481046 26.28834091603173 4 13.711502470576258 27.32433850418549 29.686851522673702 29.277307502564543 5 14.234591199893504 28.62892805963838 41.65681307408596 15.479667666382152 6 27.433967878593297 42.07497083075574 14.909594919461563 15.5814663711894 7 26.075346702896564 24.17092785604097 16.457718299491788 33.296007141570676 8 22.90392551467076 41.289554669819815 14.59480200151915 21.211717813990276 9 20.7457929727571 15.34184788141234 15.157044078839183 48.75531506699138 10-11 23.589500638199574 26.872900401713352 26.678308262139495 22.859290697947582 12-13 22.879258905429005 16.8469025786395 28.277722528053374 31.99611598787812 14-15 21.620478767139378 16.95731502000736 18.508570667877812 42.91363554497545 16-17 30.688394164585013 26.58355715997275 17.777577660665763 24.950471014776472 18-19 30.774531530191148 20.55550770146355 18.339819737985795 30.33014103035951 20-21 22.135736826856064 19.22429386936877 18.088846777287927 40.55112252648724 22-23 22.25672067218468 27.580401400123723 18.064963235006225 32.09791469268537 24-25 30.444468806527645 27.75502533221616 17.990571873800928 23.809933987455267 26-27 30.17626837270855 28.67317134288153 19.295161429253817 21.855398855156103 28-29 22.367916180512594 20.479550206338143 27.539681918200827 29.612851694948432 30-31 29.176291864717353 18.64130051760726 29.49969851922038 22.68270909845501 32-33 23.041353766160544 19.60603901239595 27.41321660415182 29.939390617291682 34-35 21.78805509659131 35.13229916290142 21.14985552414587 21.9297902163614 36-37 29.907284871929395 28.95820771634182 19.508938709349035 21.62556870237974 38-39 21.60716662881843 20.268905194083146 28.161828617965124 29.962099559133303 40-41 20.56725370586439 17.904042974714766 30.191146644949608 31.337556674471234 42-43 28.882641754696444 18.106857317369208 29.490301715699708 23.520199212234637 44-45 20.62794139526871 26.32318739575421 30.845007556596165 22.203863652380914 46-47 28.163786285365262 18.59666570088408 23.445416317549313 29.794131696201344 48-49 27.489565632757255 18.00858241388221 21.96111289476363 32.5407390585969 50-51 20.139699145673948 18.378973085988584 30.707579305106382 30.773748463231094 52-53 18.063397101086114 18.50113153175728 39.136903596626546 24.29856777053006 54-55 17.990963407280958 18.513269069638145 32.311691972780594 31.184075550300307 56-57 26.28051024643117 18.547724015880597 23.79818798305443 31.373577754633796 58-59 19.059066740797007 19.3370555116168 36.961152048111636 24.642725699474564 60-61 26.478626187325276 27.490740233197343 22.840497090906243 23.190136488571138 62-63 18.332380601865268 38.29667274848672 19.715668386803756 23.655278262844256 64-65 17.81359874082833 39.78175923823246 18.950220433349255 23.454421587589955 66-67 18.110772652169487 39.67095526338457 18.474507255115384 23.743764829330555 68-69 17.838265350070085 39.8581082668379 18.607628638324865 23.695997744767155 70-71 18.2822643164217 37.88360492705731 19.177701385245452 24.656429371275536 72-73 19.0140403905938 32.788971284934576 20.897707963007917 27.29928036146371 74-75 19.31121430193496 31.13552539877685 22.049207927769903 27.504052371518288 76 19.336272444656743 31.72909015449911 22.015927581967535 26.918709818876614 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 1.0 14 3.0 15 2.0 16 2.0 17 4.0 18 6.5 19 12.0 20 23.5 21 32.0 22 27.0 23 44.5 24 92.5 25 118.0 26 149.0 27 215.0 28 325.5 29 401.0 30 504.0 31 611.5 32 835.0 33 1054.0 34 1189.5 35 1500.0 36 1853.0 37 2031.0 38 2470.5 39 6730.0 40 11305.5 41 11117.5 42 10174.0 43 9128.0 44 7300.5 45 5993.0 46 5467.0 47 5237.5 48 4869.0 49 4544.5 50 4359.0 51 4115.0 52 3552.5 53 2945.5 54 2657.0 55 2632.5 56 2557.5 57 2430.5 58 2354.0 59 2333.0 60 2305.5 61 2290.5 62 2282.0 63 2274.0 64 2312.5 65 2312.0 66 2198.5 67 2132.0 68 2174.5 69 2061.0 70 1882.0 71 1859.0 72 1847.0 73 1749.0 74 1605.0 75 1547.0 76 1421.0 77 1194.5 78 1008.5 79 923.0 80 791.0 81 593.0 82 440.0 83 353.0 84 266.5 85 145.0 86 88.0 87 66.0 88 47.5 89 20.5 90 10.0 91 5.0 92 2.0 93 1.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 127703.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.93415972999851 #Duplication Level Percentage of deduplicated Percentage of total 1 49.59140534768681 17.820254809988803 2 24.17137004510885 17.371557441876856 3 12.0115931922683 12.948795251481954 4 5.8053128200658115 8.344361526354119 5 2.782801978687703 4.999882539955991 6 1.6016910370677069 3.453325293845877 7 1.0547189958377825 2.653030860668896 8 0.6537514437011048 1.8793607041338103 9 0.5055677831288544 1.635043812596415 >10 1.7782039268670051 9.2331425260174 >50 0.008716685916014731 0.1855868695332138 >100 0.02397088626904051 1.8065354768486253 >500 0.004358342958007366 1.0446113247143765 >1k 0.004358342958007366 2.5480998880214245 >5k 0.0 0.0 >10k+ 0.002179171479003683 14.076411673962241 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 17976 14.076411673962241 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 1967 1.5402927104296689 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1287 1.0078071775917559 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 770 0.6029615592429309 Illumina PCR Primer Index 9 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 564 0.44164976547144547 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 497 0.3891842791477099 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 382 0.29913157874129814 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 294 0.2302216862563918 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 172 0.13468751712958976 No Hit TTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 162 0.1268568475290322 No Hit TATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCT 153 0.11980924488853041 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 145 0.11354470920808438 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 135 0.10571403960752683 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCG 131 0.10258177176730382 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 7.830669600557544E-4 0.0 4 0.0 0.0 0.0 0.0031322678402230177 0.0 5 0.0 0.0 0.0 0.00548146872039028 0.0 6 0.0 0.0 0.0 0.00548146872039028 0.0 7 0.0 0.0 0.0 0.00548146872039028 0.0 8 0.0 0.0 0.0 0.00704760264050179 0.0 9 0.0 0.0 0.0 0.007830669600557543 0.0 10 0.0 0.0 0.0 0.011746004400836315 0.0 11 0.0 0.0 0.0 0.01252907136089207 0.0 12 0.0 0.0 0.0 0.014878272241059334 0.0 13 0.0 0.0 0.0 0.015661339201115086 0.0 14 0.0 0.0 0.0 0.01801054008128235 0.0 15 0.0 0.0 0.0 0.021142807921505368 0.0 16 0.0 0.0 0.0 0.021142807921505368 0.0 17 0.0 0.0 0.0 0.02192587488156112 0.0 18 0.0 0.0 0.0 0.02349200880167263 0.0 19 0.0 0.0 0.0 0.024275075761728385 0.0 20 0.0 0.0 0.0 0.02505814272178414 0.0 21 0.0 0.0 0.0 0.02505814272178414 0.0 22 0.0 0.0 0.0 0.02819041056200716 0.0 23 0.0 0.0 0.0 0.03132267840223017 0.0 24 0.0 0.0 0.0 0.032888812322341685 0.0 25 0.0 0.0 0.0 0.03837028104273196 0.0 26 0.0 0.0 0.0 0.04933321848351253 0.0 27 0.0 0.0 0.0 0.11824311096841891 0.0 28 0.0 0.0 0.0 0.18323766865304653 0.0 29 0.0 0.0 0.0 0.24823222633767414 0.0 30 0.0 0.0 0.0 0.32027438666280356 0.0 31 0.0 0.0 0.0 0.39544881482815597 0.0 32 0.0 0.0 0.0 0.5003797874756271 0.0 33 0.0 0.0 0.0 0.6515117107663876 0.0 34 0.0 0.0 0.0 0.889564066623337 0.0 35 0.0 0.0 0.0 1.1980924488853042 0.0 36 0.0 0.0 0.0 1.6679326249187567 0.0 37 0.0 0.0 0.0 2.3202274026452003 0.0 38 0.0 0.0 0.0 2.993664988293149 0.0 39 0.0 0.0 0.0 3.70547285498383 0.0 40 0.0 0.0 0.0 4.512814890801312 0.0 41 0.0 0.0 0.0 5.2700406411752265 0.0 42 0.0 0.0 0.0 6.112620690195219 0.0 43 0.0 0.0 0.0 6.979475814976938 0.0 44 0.0 0.0 0.0 7.898013359122339 0.0 45 0.0 0.0 0.0 8.770349952624448 0.0 46 0.0 0.0 0.0 9.604316265083828 0.0 47 0.0 0.0 0.0 10.464906854185102 0.0 48 0.0 0.0 0.0 11.257370617761525 0.0 49 0.0 0.0 0.0 12.03104077429661 0.0 50 0.0 0.0 0.0 12.692732355543722 0.0 51 0.0 0.0 0.0 13.426466097115965 0.0 52 0.0 0.0 0.0 14.134358629006366 0.0 53 0.0 0.0 0.0 14.922907057782512 0.0 54 0.0 0.0 0.0 15.626101187912578 0.0 55 0.0 0.0 0.0 16.31754931364181 0.0 56 0.0 0.0 0.0 16.95183355128697 0.0 57 0.0 0.0 0.0 17.56419191405057 0.0 58 0.0 0.0 0.0 18.16558733937339 0.0 59 0.0 0.0 0.0 18.80691917965905 0.0 60 0.0 0.0 0.0 19.340970846417076 0.0 61 0.0 0.0 0.0 19.912609727257777 0.0 62 0.0 0.0 0.0 20.431783121774743 0.0 63 0.0 0.0 0.0 21.001855868695333 0.0 64 0.0 0.0 0.0 21.593071423537427 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATTTAC 15 0.0022203662 70.0 36 GCTTTTG 15 0.0022203662 70.0 44 ATTTACT 20 0.006937966 52.5 37 ACAGTCG 20 0.006937966 52.5 55 TGCATCC 20 0.006937966 52.5 33 CCGTATC 20 0.006937966 52.5 63 GGAACCG 20 0.006937966 52.5 5 GTATCGA 20 0.006937966 52.5 65 TAAGGGA 20 0.006937966 52.5 37 GACTGTT 20 0.006937966 52.5 49 CGACTAA 20 0.006937966 52.5 29 GATTATC 20 0.006937966 52.5 56 TCTTTAT 110 0.0 50.90909 1 TGGACAG 35 2.0769676E-5 50.0 5 CCGTCTT 2595 0.0 49.49904 47 TCTTCTG 2610 0.0 49.482758 50 CTGCTTG 2605 0.0 49.309025 54 CTCGTAT 2615 0.0 49.254303 39 CTTGAAA 2595 0.0 49.229286 57 CGTCTTC 2620 0.0 49.160305 48 >>END_MODULE