##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779723_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 145273 Sequences flagged as poor quality 0 Sequence length 76 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.81044653858597 33.0 23.0 34.0 12.0 34.0 2 27.37262257955711 33.0 23.0 34.0 12.0 34.0 3 26.40435593675356 32.0 21.0 34.0 11.0 34.0 4 28.57727864090368 33.0 23.0 34.0 12.0 34.0 5 28.074150048529322 34.0 23.0 34.0 11.0 34.0 6 30.288553275557053 36.0 26.0 38.0 11.0 38.0 7 31.341563814335768 36.0 27.0 38.0 12.0 38.0 8 30.60687808470948 36.0 26.0 38.0 11.0 38.0 9 32.10307490036001 37.0 31.0 38.0 12.0 38.0 10-11 31.676164875785588 37.0 27.5 38.0 11.0 38.0 12-13 30.818985633944365 35.5 27.0 38.0 11.0 38.0 14-15 30.733188548457044 35.5 26.5 38.0 11.0 38.0 16-17 30.40211532769338 35.5 26.5 38.0 11.0 38.0 18-19 30.914375004302244 36.0 26.5 38.0 11.5 38.0 20-21 29.78863932045184 35.0 24.0 38.0 11.0 38.0 22-23 29.80386582503287 35.5 24.5 37.5 11.0 38.0 24-25 30.94717531819402 36.0 26.0 38.0 11.0 38.0 26-27 29.52074714503039 34.5 23.0 38.0 11.0 38.0 28-29 31.640635217831253 37.0 29.0 38.0 11.0 38.0 30-31 32.08765565521467 37.0 31.0 38.0 11.0 38.0 32-33 32.21716698904821 37.0 31.0 38.0 11.0 38.0 34-35 32.29260082740771 37.0 31.0 38.0 11.0 38.0 36-37 30.08052081253915 35.0 24.0 38.0 11.0 38.0 38-39 28.372918573995168 34.0 21.0 37.0 11.0 38.0 40-41 29.54732813392716 34.0 24.0 37.5 11.0 38.0 42-43 30.606805806997862 35.5 25.0 38.0 11.0 38.0 44-45 32.30574504553496 37.0 31.0 38.0 11.0 38.0 46-47 30.86055908530835 35.5 26.5 38.0 11.0 38.0 48-49 30.153751901592173 35.0 24.0 38.0 11.0 38.0 50-51 27.936350870430154 33.0 21.0 37.0 11.0 38.0 52-53 31.29872378212056 36.0 27.5 38.0 11.0 38.0 54-55 30.325108588657216 35.5 24.5 38.0 11.0 38.0 56-57 30.79481390210156 36.0 27.0 38.0 11.0 38.0 58-59 31.912038024959905 37.0 29.5 38.0 11.0 38.0 60-61 32.45656109531709 37.0 31.0 38.0 11.0 38.0 62-63 32.30781356480557 37.0 31.0 38.0 11.0 38.0 64-65 31.99137485974682 37.0 29.0 38.0 11.0 38.0 66-67 29.905120015419243 35.5 23.5 38.0 11.0 38.0 68-69 29.99139206872578 35.0 24.0 38.0 11.0 38.0 70-71 29.54983376126328 34.5 23.0 38.0 11.0 38.0 72-73 28.36699868523401 33.5 21.5 37.0 11.0 38.0 74-75 30.386210789341447 35.5 25.0 37.5 11.0 38.0 76 30.66121715666366 36.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 2.0 4 1.0 5 1.0 6 0.0 7 1.0 8 0.0 9 1.0 10 0.0 11 3.0 12 50.0 13 227.0 14 657.0 15 1161.0 16 1979.0 17 3004.0 18 4102.0 19 4412.0 20 4054.0 21 3527.0 22 2952.0 23 2749.0 24 2732.0 25 3101.0 26 3317.0 27 3751.0 28 4412.0 29 5158.0 30 5959.0 31 7225.0 32 8971.0 33 11341.0 34 14394.0 35 17916.0 36 18574.0 37 9538.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.059749574938216 16.389831558513972 10.75836528467093 32.79205358187688 2 20.952276059556834 14.861674227144755 38.071768325841695 26.114281387456717 3 22.468197587972906 14.684867008095159 34.25987113827854 28.587064265653396 4 17.971804614791566 16.39545129137067 27.51321658681645 38.11952750702131 5 17.47193215532136 26.302891796823914 35.15312549475815 21.072050553096584 6 32.470589854962725 29.579481390210155 13.931012645157736 24.01891610966938 7 30.58723919792391 22.388193263717277 17.17111920315544 29.853448335203375 8 25.288432414571687 30.23308643335077 16.35873007131646 28.119751080761073 9 24.35705041716001 13.600379987333755 17.280474708814054 44.76209488669218 10-11 28.846881948412236 20.661609312507316 23.25855149483365 27.2329572442468 12-13 26.7073733194738 16.06834311991023 26.185231332649533 31.039052227966437 14-15 26.77568356417105 19.062009527218656 20.472850180356307 33.68945672825399 16-17 28.469004922039034 18.791518948129283 22.992806250645373 29.746669879186317 18-19 26.386857168426086 18.238329128389054 23.982638685716843 31.392175017468016 20-21 27.622489545149463 18.52169273925689 23.85358046362745 30.0022372519662 22-23 28.44633828170982 17.594558965762925 24.198628038811425 29.760474713715823 24-25 27.021938610439943 20.637919996695786 19.81875004302363 32.52139134984064 26-27 26.857416241593185 20.155366939952778 23.683304765641672 29.303912052812368 28-29 27.397637470055347 20.621885067599198 21.730181457719524 30.25029600462593 30-31 26.985853440264346 20.159019722575984 21.87209582487179 30.98303101228789 32-33 26.916828438863877 20.286577726377818 22.419905552572523 30.376688282185782 34-35 26.893423099692974 20.3836410447042 22.471190781049934 30.25174507455289 36-37 27.71742871697438 17.715088183057286 26.846268225186897 27.721214874781435 38-39 26.69078342758604 16.992334725037946 30.856259745087446 25.460622102288568 40-41 26.840853471746563 20.218496477140132 22.35389683028661 30.586753220826697 42-43 24.243550690966664 20.351420654998538 23.749290102741494 31.655738551293304 44-45 24.272369308716424 18.772802995883414 26.393994465325676 30.560833230074486 46-47 25.822106879057184 18.29803052310573 27.08392133106624 28.795941266770843 48-49 26.075957209532856 18.901876557487643 26.694477716740323 28.327688516239174 50-51 27.122721875161343 17.626791952776774 29.15036054175917 26.100125630302717 52-53 22.93868812622405 20.635319466769467 26.043348214132056 30.382644192874427 54-55 24.885382677295446 19.369983340905648 25.615422741728967 30.129211240069942 56-57 24.83057002130567 20.02767327635759 25.124856728839752 30.016899973496987 58-59 23.353021353930032 21.061363292167474 25.097751710654936 30.487863643247557 60-61 23.408517507598155 19.894606771738644 24.774636785747475 31.922238934915725 62-63 23.096251015378684 20.91921027632068 24.749425192405656 31.23511351589498 64-65 23.73414562789337 21.37023078114513 23.68251673636567 31.213106854595836 66-67 22.12592245842053 23.42459246613063 20.124394206410397 34.32509086903844 68-69 22.457663587759193 23.783441376247545 20.23644356923755 33.52245146675571 70-71 22.10270884246033 23.89632740164527 19.473376243417203 34.5275875124772 72-73 21.28425588743486 24.61329827145876 18.41505641336298 35.6873894277434 74-75 23.1415256045764 23.004880668011317 20.519801469019118 33.33379225839316 76 23.388656749296125 21.71587490620719 20.542862453275692 34.352605891220996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 1.0 4 1.0 5 1.0 6 0.5 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 0.5 15 1.5 16 2.0 17 2.0 18 5.0 19 10.0 20 15.0 21 18.0 22 28.5 23 48.0 24 80.0 25 103.0 26 136.0 27 201.5 28 294.5 29 355.0 30 431.0 31 629.0 32 868.0 33 985.0 34 1190.5 35 1551.0 36 1973.0 37 2240.0 38 2538.0 39 3096.0 40 3736.0 41 4325.0 42 4534.0 43 4767.0 44 5172.5 45 5439.0 46 5533.0 47 5477.5 48 5365.0 49 5216.5 50 5125.0 51 4881.5 52 4405.0 53 4139.0 54 4106.0 55 4097.5 56 4006.0 57 4007.0 58 4091.0 59 4174.0 60 4407.0 61 4672.0 62 4787.0 63 4899.0 64 5079.0 65 5105.5 66 5019.5 67 4975.0 68 4880.0 69 4663.5 70 4408.5 71 4275.0 72 4009.5 73 3535.0 74 3144.5 75 2963.0 76 2656.5 77 2074.5 78 1538.0 79 1277.0 80 1080.5 81 731.0 82 464.5 83 351.0 84 273.0 85 154.0 86 85.0 87 57.0 88 43.0 89 20.5 90 9.5 91 5.0 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.883591582744213E-4 4 6.883591582744213E-4 5 0.0 6 0.0 7 0.0 8 0.003441795791372106 9 0.003441795791372106 10-11 0.004130154949646528 12-13 0.004130154949646528 14-15 0.003441795791372106 16-17 0.00550687326619537 18-19 0.005162693687058159 20-21 0.003785975370509317 22-23 0.004474334528783738 24-25 0.002753436633097685 26-27 0.002753436633097685 28-29 0.003441795791372106 30-31 0.00550687326619537 32-33 0.0048185141079209485 34-35 0.0048185141079209485 36-37 0.0048185141079209485 38-39 0.005162693687058159 40-41 0.005162693687058159 42-43 0.003785975370509317 44-45 0.0048185141079209485 46-47 0.004130154949646528 48-49 0.0048185141079209485 50-51 0.003785975370509317 52-53 0.005162693687058159 54-55 0.0048185141079209485 56-57 0.004474334528783738 58-59 0.0048185141079209485 60-61 0.005162693687058159 62-63 0.0048185141079209485 64-65 0.003785975370509317 66-67 0.006195232424469791 68-69 0.0258134684352908 70-71 0.00550687326619537 72-73 0.004130154949646528 74-75 0.004130154949646528 76 0.004130154949646528 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 145273.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 95.89966573650304 #Duplication Level Percentage of deduplicated Percentage of total 1 96.78770233864783 92.8190830168048 2 2.5273776347624315 4.847493407272617 3 0.465266078389897 1.338565841883742 4 0.13072495848155022 0.5014591928719561 5 0.053998768237465765 0.25892319120779317 6 0.01597310513961554 0.09190892661978894 7 0.009978255659963289 0.06698379676966944 8 0.003990713857236645 0.030616649996722 9 0.002992903793677482 0.025831662605566415 >10 0.0019952430303498956 0.019134313967364234 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.883591582744213E-4 0.0 2 0.0 0.0 0.0 6.883591582744213E-4 0.0 3 0.0 0.0 0.0 6.883591582744213E-4 0.0 4 0.0 0.0 0.0 0.002065077474823264 0.0 5 0.0 0.0 0.0 0.004130154949646528 0.0 6 0.0 0.0 0.0 0.004130154949646528 0.0 7 0.0 0.0 0.0 0.004130154949646528 0.0 8 0.0 0.0 0.0 0.006195232424469791 0.0 9 0.0 0.0 0.0 0.008948669057567476 0.0 10 0.0 0.0 0.0 0.009637028215841897 0.0 11 0.0 0.0 0.0 0.01032538737411632 0.0 12 0.0 0.0 0.0 0.01101374653239074 0.0 13 0.0 0.0 0.0 0.01101374653239074 0.0 14 0.0 0.0 0.0 0.011702105690665161 0.0 15 0.0 0.0 0.0 0.011702105690665161 0.0 16 0.0 0.0 0.0 0.011702105690665161 6.883591582744213E-4 17 0.0 0.0 0.0 0.011702105690665161 6.883591582744213E-4 18 0.0 0.0 0.0 0.012390464848939582 6.883591582744213E-4 19 0.0 0.0 0.0 0.015143901482037267 6.883591582744213E-4 20 0.0 0.0 0.0 0.01583226064031169 6.883591582744213E-4 21 0.0 0.0 0.0 0.017897338115134952 6.883591582744213E-4 22 0.0 0.0 0.0 0.03304123959717222 6.883591582744213E-4 23 0.0 0.0 0.0 0.035794676230269905 6.883591582744213E-4 24 0.0 0.0 0.0 0.04061319033819086 6.883591582744213E-4 25 0.0 0.0 0.0 0.0419899086547397 6.883591582744213E-4 26 0.0 0.0 0.0 0.04474334528783738 6.883591582744213E-4 27 0.0 0.0 0.0 0.08122638067638172 6.883591582744213E-4 28 0.0 0.0 0.0 0.13698347249660983 6.883591582744213E-4 29 0.0 0.0 0.0 0.18172681778444721 6.883591582744213E-4 30 0.0 0.0 0.0 0.2367955504464009 6.883591582744213E-4 31 0.0 0.0 0.0 0.26708335341047545 6.883591582744213E-4 32 0.0 0.0 0.0 0.32834731849689897 6.883591582744213E-4 33 0.0 0.0 0.0 0.3854811286336759 6.883591582744213E-4 34 0.0 0.0 0.0 0.47152602341797856 6.883591582744213E-4 35 0.0 0.0 0.0 0.6656433060513653 6.883591582744213E-4 36 0.0 0.0 0.0 0.8108870884472682 6.883591582744213E-4 37 0.0 0.0 0.0 1.2294094566781164 6.883591582744213E-4 38 0.0 0.0 0.0 1.6293461276355552 6.883591582744213E-4 39 0.0 0.0 0.0 2.080221376305301 6.883591582744213E-4 40 0.0 0.0 0.0 2.58134684352908 6.883591582744213E-4 41 0.0 0.0 0.0 3.0845373882276816 0.0013767183165488426 42 0.0 0.0 0.0 3.592546447034205 0.0013767183165488426 43 0.0 0.0 0.0 4.136350182070998 0.0013767183165488426 44 0.0 0.0 0.0 4.689102586165357 0.0013767183165488426 45 0.0 0.0 0.0 5.052556221734252 0.0013767183165488426 46 0.0 0.0 0.0 5.508938343670193 0.0013767183165488426 47 0.0 0.0 0.0 6.023830994059461 0.0013767183165488426 48 0.0 0.0 0.0 6.374894164779415 0.0013767183165488426 49 0.0 0.0 0.0 6.73215256792384 0.0013767183165488426 50 0.0 0.0 0.0 7.2257060844066 0.0013767183165488426 51 0.0 0.0 0.0 7.740598734795867 0.0013767183165488426 52 0.0 0.0 0.0 8.181148596091496 0.0013767183165488426 53 0.0 0.0 0.0 8.711873507121075 0.0013767183165488426 54 0.0 0.0 0.0 9.232961389934813 0.0013767183165488426 55 0.0 0.0 0.0 9.57645260991375 0.0013767183165488426 56 0.0 0.0 0.0 9.95023163285676 0.0013767183165488426 57 0.0 0.0 0.0 10.271695359770915 0.0013767183165488426 58 0.0 0.0 0.0 10.617251657224674 0.0013767183165488426 59 0.0 0.0 0.0 10.98414708858494 0.0013767183165488426 60 0.0 0.0 0.0 11.201668582599657 0.0013767183165488426 61 0.0 0.0 0.0 11.421943513247472 0.0013767183165488426 62 0.0 0.0 0.0 11.586461352075059 0.0013767183165488426 63 0.0 0.0 0.0 11.79228074039911 0.0013767183165488426 64 0.0 0.0 0.0 11.99603505124834 0.0013767183165488426 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGAGA 30 8.346849E-6 58.329315 23 GCCGTAT 85 0.0 57.64309 54 CGTCTGA 40 7.442286E-7 52.496384 56 AAGTGTC 20 0.006941768 52.496384 34 GAGATAT 20 0.006941768 52.496384 32 CGTCTCA 45 1.6763588E-6 46.663456 56 ACTGAGG 30 5.864352E-4 46.663452 1 ATACACG 30 5.864352E-4 46.663452 51 TTCCGAC 70 3.8016879E-10 44.996902 19 ACGCTTC 80 2.910383E-11 43.746986 15 AGTGTCG 40 4.5767723E-5 43.746986 35 CGTATCA 105 0.0 43.33035 56 GTCTGAC 50 3.461495E-6 41.997112 57 TCTCGGT 185 0.0 41.618755 43 CCGTATC 120 0.0 40.83052 55 TGCCTAC 120 0.0 40.83052 19 CGCCGTA 130 0.0 40.381836 53 CTAGTGT 35 0.001252575 39.997246 33 GACGCTT 70 1.909575E-8 39.997246 14 TAGTGTC 35 0.001252575 39.997246 34 >>END_MODULE