##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779723_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 145273 Sequences flagged as poor quality 0 Sequence length 76 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.65113957858652 34.0 34.0 34.0 34.0 34.0 2 33.65160077922257 34.0 34.0 34.0 34.0 34.0 3 33.652523180494654 34.0 34.0 34.0 34.0 34.0 4 33.68879282454414 34.0 34.0 34.0 34.0 34.0 5 33.67802000371714 34.0 34.0 34.0 34.0 34.0 6 37.30585862479607 38.0 38.0 38.0 36.0 38.0 7 37.31756073048674 38.0 38.0 38.0 36.0 38.0 8 37.20926806770701 38.0 38.0 38.0 36.0 38.0 9 37.22064664459328 38.0 38.0 38.0 36.0 38.0 10-11 37.11979858611029 38.0 38.0 38.0 36.0 38.0 12-13 37.08707743352171 38.0 38.0 38.0 35.5 38.0 14-15 37.127563277415625 38.0 38.0 38.0 36.0 38.0 16-17 37.09092191942068 38.0 38.0 38.0 35.5 38.0 18-19 37.09991533182354 38.0 38.0 38.0 36.0 38.0 20-21 37.12021160160525 38.0 38.0 38.0 36.0 38.0 22-23 37.0551719865357 38.0 38.0 38.0 35.0 38.0 24-25 37.055361285304215 38.0 38.0 38.0 35.0 38.0 26-27 36.929233236733594 38.0 38.0 38.0 35.0 38.0 28-29 36.87520736819643 38.0 37.5 38.0 34.5 38.0 30-31 36.86902934475092 38.0 37.0 38.0 35.0 38.0 32-33 36.72214726755832 38.0 37.0 38.0 34.0 38.0 34-35 36.70158597950066 38.0 37.0 38.0 34.0 38.0 36-37 36.69123649955601 38.0 37.0 38.0 34.0 38.0 38-39 35.89759280802352 38.0 37.0 38.0 31.0 38.0 40-41 36.557398828412715 38.0 37.0 38.0 34.0 38.0 42-43 36.81443557990818 38.0 37.0 38.0 34.5 38.0 44-45 36.80130857075988 38.0 37.0 38.0 34.5 38.0 46-47 36.851448651848585 38.0 37.0 38.0 35.0 38.0 48-49 36.832752817109856 38.0 37.0 38.0 34.5 38.0 50-51 36.75914657231557 38.0 37.0 38.0 34.0 38.0 52-53 36.73253804905247 38.0 37.0 38.0 34.0 38.0 54-55 36.72039883529631 38.0 37.0 38.0 34.0 38.0 56-57 36.75049733949186 38.0 37.0 38.0 34.0 38.0 58-59 36.653400838421454 38.0 37.0 38.0 34.0 38.0 60-61 36.72858686748398 38.0 37.0 38.0 34.0 38.0 62-63 36.74965065772717 38.0 37.0 38.0 34.5 38.0 64-65 36.78633331727162 38.0 37.0 38.0 35.0 38.0 66-67 36.728707330336675 38.0 37.0 38.0 34.0 38.0 68-69 36.5529761208208 38.0 37.0 38.0 34.0 38.0 70-71 35.55601866830037 38.0 36.5 38.0 29.0 38.0 72-73 33.85475277580831 38.0 36.0 38.0 20.5 38.0 74-75 33.66293805455935 38.0 36.0 38.0 19.0 38.0 76 33.16124813282578 38.0 34.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 8.0 22 12.0 23 24.0 24 41.0 25 76.0 26 153.0 27 328.0 28 546.0 29 946.0 30 1479.0 31 2244.0 32 3439.0 33 5615.0 34 9451.0 35 18185.0 36 21902.0 37 80822.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.05111755109346 14.158171167388298 10.495412086210102 37.29529919530815 2 20.374742725764595 14.916054600648435 38.842730583109045 25.866472090477927 3 20.400900373779024 16.0903953246646 34.24104961004454 29.26765469151184 4 15.808168069772085 23.862658580741087 27.391875985214043 32.93729736427278 5 16.99076910368754 27.63073661313527 37.602307379898534 17.776186903278653 6 32.032793430300195 37.4715191398264 13.620562664775973 16.87512476509744 7 28.8463788866479 22.3014600097747 16.027754641261623 32.82440646231578 8 24.727926042692037 38.42283149656164 14.60422790195012 22.245014558796196 9 22.401960446882764 13.436770769516704 14.597344310367378 49.56392447323316 10-11 27.38395985489389 24.089817102971647 23.684029379168877 24.842193662965588 12-13 25.629332360452388 15.278819877059055 25.252455721297146 33.83939204119141 14-15 24.368946741651925 15.652598900002065 16.888891948262927 43.08956241008309 16-17 32.157730617527 23.82789644324823 16.439393417909727 27.57497952131504 18-19 32.60206645419314 18.560572164132356 16.57018165798187 32.267179723692635 20-21 25.27310649604538 17.55006091978551 16.69683974310436 40.47999284106476 22-23 25.589063349693337 24.56031058765221 16.511326949949407 33.33929911270504 24-25 32.817867050312174 24.10668190234937 16.152003469330158 26.923447578008304 26-27 31.828694939871827 25.376704549365677 17.26955456278868 25.525045947973812 28-29 25.726391001769084 24.830835736854063 18.111761992937435 31.33101126843942 30-31 25.165034108196295 18.03569830594811 30.2699056259594 26.529361959896196 32-33 31.865866334418648 17.00901062138181 19.632003193986495 31.49311985021305 34-35 32.15050284636512 17.181788770108692 17.734196994623915 32.933511388902275 36-37 33.17443709429832 22.840445230703573 17.70528590997639 26.279831765021715 38-39 24.657713408548044 18.512731202632285 25.35433287672176 31.47522251209791 40-41 24.02029282798593 16.6675844788777 26.72003744673821 32.59208524639816 42-43 30.822313850474625 16.22565789926552 26.220632877410115 26.731395372849736 44-45 23.270669704625085 23.571482656791005 27.798007888595954 25.359839749987955 46-47 29.65451253846207 17.447839584781754 21.727024292194695 31.17062358456148 48-49 29.13273629649006 16.790800768208822 20.206094731987363 33.87036820331376 50-51 23.067259573354992 17.16595650946838 27.399447935955063 32.367335981221565 52-53 21.409690720230188 17.49051785259477 34.3054111913432 26.79438023583185 54-55 21.130216901970773 17.250280506356997 28.680140149924625 32.939362441747605 56-57 27.846881388833438 17.37315261610898 21.947987582000785 32.831978413056795 58-59 22.22126616783573 18.21329496878291 32.419651277250416 27.145787586130936 60-61 28.214465179351976 24.775078645033833 20.869328780984766 26.14112739462942 62-63 21.16360232114708 33.653535068457316 18.29589806777584 26.886964542619758 64-65 20.825962154013478 34.743551795584864 17.846055357843507 26.584430692558147 66-67 21.28578607174079 34.50813296345501 17.1828213088461 27.023259655958093 68-69 20.94057395386617 35.40196733047435 17.285731003008127 26.371727712651357 70-71 21.51328877355049 33.8707123828929 17.594460085494205 27.02153875806241 72-73 21.822017856036567 29.831765021717732 19.158067913514557 29.188149208731147 74-75 22.137974709684524 27.733302127718158 20.32380414805229 29.80491901454503 76 22.516916426314594 27.426982302286042 20.0140425268288 30.042058744570564 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 2.5 16 2.5 17 0.0 18 6.5 19 11.0 20 15.0 21 21.0 22 24.0 23 49.5 24 101.5 25 131.0 26 167.0 27 223.5 28 264.5 29 285.0 30 373.5 31 522.5 32 780.0 33 977.0 34 1098.0 35 1355.5 36 1684.5 37 1877.0 38 2083.0 39 2551.5 40 3132.0 41 6562.5 42 9675.0 43 10477.0 44 10394.5 45 8232.5 46 6955.0 47 6175.5 48 4827.0 49 3878.0 50 3498.0 51 3278.5 52 2736.5 53 2418.5 54 2423.0 55 2509.5 56 2568.5 57 2611.5 58 2682.0 59 2815.5 60 3176.0 61 3591.0 62 3779.0 63 3876.5 64 4048.5 65 4212.5 66 4331.0 67 4360.0 68 4307.5 69 4286.0 70 4221.5 71 4126.0 72 4183.0 73 4094.0 74 3667.5 75 3387.0 76 3258.5 77 2854.0 78 2242.5 79 1907.0 80 1683.5 81 1225.5 82 859.0 83 727.0 84 585.0 85 321.0 86 165.5 87 132.0 88 91.5 89 39.0 90 16.0 91 2.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 145273.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.79666558823732 #Duplication Level Percentage of deduplicated Percentage of total 1 53.28765360612494 22.805338913631577 2 25.096506465933217 21.480935893111592 3 11.43440777198739 14.680635768518583 4 4.801196680177572 8.21900834979659 5 2.1520941903107507 4.605122768855878 6 1.0036672457054623 2.5772166885794334 7 0.543653091423792 1.6286577684772807 8 0.41658624461172233 1.4262801759446009 9 0.24448304703081772 0.9416753285194084 >10 0.9891912758154797 5.971515698030604 >50 0.004825323296660876 0.1390485499714331 >100 0.019301293186643503 1.8730252696647003 >500 0.001608441098886959 0.48735828405829024 >1k 0.003216882197773918 2.098118714420436 >5k 0.0 0.0 >10k+ 0.001608441098886959 11.066061828419596 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGT 16076 11.066061828419596 No Hit TCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 1852 1.2748411611242283 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 1196 0.8232775532962079 No Hit ATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTCTT 708 0.48735828405829024 RNA PCR Primer, Index 30 (95% over 22bp) CTTATACACATCTCCGAGCCCACGAGACATTGCCGGACCTCGTATGCCGT 422 0.29048756479180576 No Hit TCTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 413 0.284292332367336 No Hit CTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 402 0.27672038162631735 No Hit CTTTACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 267 0.18379189525927048 No Hit CTTATACACATCTCCGAGCCCACGAGACATTGCCGGAACTCGTATGCCGT 173 0.11908613438147486 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCC 165 0.11357926111527951 No Hit TTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCGTC 159 0.10944910616563297 No Hit CTTTATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 156 0.10738402869080972 No Hit CTTAATACACATCTCCGAGCCCACGAGACATTGCCGGATCTCGTATGCCG 153 0.10531895121598646 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002065077474823264 0.0 2 0.0 0.0 0.0 0.002753436633097685 0.0 3 0.0 0.0 0.0 0.002753436633097685 0.0 4 0.0 0.0 0.0 0.0048185141079209485 0.0 5 0.0 0.0 0.0 0.008260309899293055 0.0 6 0.0 0.0 0.0 0.008260309899293055 0.0 7 0.0 0.0 0.0 0.008260309899293055 0.0 8 0.0 0.0 0.0 0.01032538737411632 0.0 9 0.0 0.0 0.0 0.013767183165488426 0.0 10 0.0 0.0 0.0 0.01652061979858611 0.0 11 0.0 0.0 0.0 0.018585697273409373 0.0 12 0.0 0.0 0.0 0.019274056431683794 0.0 13 0.0 0.0 0.0 0.019274056431683794 0.0 14 0.0 0.0 0.0 0.019962415589958215 0.0 15 0.0 0.0 0.0 0.02065077474823264 0.0 16 0.0 0.0 0.0 0.02202749306478148 0.0 17 0.0 0.0 0.0 0.022715852223055902 0.0 18 0.0 0.0 0.0 0.024092570539604743 0.0 19 0.0 0.0 0.0 0.028911084647525693 6.883591582744213E-4 20 0.0 0.0 0.0 0.030287802964074535 6.883591582744213E-4 21 0.0 0.0 0.0 0.03304123959717222 6.883591582744213E-4 22 0.0 0.0 0.0 0.035106317071995484 6.883591582744213E-4 23 0.0 0.0 0.0 0.04130154949646528 6.883591582744213E-4 24 0.0 0.0 0.0 0.04405498612956296 6.883591582744213E-4 25 0.0 0.0 0.0 0.046120063604386224 6.883591582744213E-4 26 0.0 0.0 0.0 0.05093857771230717 6.883591582744213E-4 27 0.0 0.0 0.0 0.10256551458288876 6.883591582744213E-4 28 0.0 0.0 0.0 0.1810384586261728 0.0034417957913721064 29 0.0 0.0 0.0 0.27396694499321966 0.0034417957913721064 30 0.0 0.0 0.0 0.35381660735305254 0.0034417957913721064 31 0.0 0.0 0.0 0.4433032979287273 0.0034417957913721064 32 0.0 0.0 0.0 0.550687326619537 0.0034417957913721064 33 0.0 0.0 0.0 0.694554390698891 0.0034417957913721064 34 0.0 0.0 0.0 0.9031272156560407 0.0034417957913721064 35 0.0 0.0 0.0 1.2438649990018793 0.0034417957913721064 36 0.0 0.0 0.0 1.7312232830601695 0.0034417957913721064 37 0.0 0.0 0.0 2.4471168076655676 0.0034417957913721064 38 0.0 0.0 0.0 3.218767424091194 0.0034417957913721064 39 0.0 0.0 0.0 3.938102744487964 0.0034417957913721064 40 0.0 0.0 0.0 4.740729523035939 0.0034417957913721064 41 0.0 0.0 0.0 5.4993013154543515 0.0034417957913721064 42 0.0 0.0 0.0 6.269575213563429 0.0034417957913721064 43 0.0 0.0 0.0 7.052239576521446 0.0034417957913721064 44 0.0 0.0 0.0 7.841099171903933 0.0034417957913721064 45 0.0 0.0 0.0 8.626516971495047 0.0034417957913721064 46 0.0 0.0 0.0 9.441534214891963 0.0034417957913721064 47 0.0 0.0 0.0 10.21662662710896 0.0034417957913721064 48 0.0 0.0 0.0 10.925636560131615 0.0034417957913721064 49 0.0 0.0 0.0 11.669752810226264 0.0034417957913721064 50 0.0 0.0 0.0 12.349163299443118 0.0034417957913721064 51 0.0 0.0 0.0 13.002416140645543 0.0034417957913721064 52 0.0 0.0 0.0 13.64190179868248 0.0034417957913721064 53 0.0 0.0 0.0 14.260736681971185 0.0034417957913721064 54 0.0 0.0 0.0 14.885078438526085 0.0034417957913721064 55 0.0 0.0 0.0 15.488769420332753 0.0034417957913721064 56 0.0 0.0 0.0 16.07043290907464 0.0034417957913721064 57 0.0 0.0 0.0 16.641082651284133 0.0034417957913721064 58 0.0 0.0 0.0 17.25372230214837 0.0034417957913721064 59 0.0 0.0 0.0 17.804409628767907 0.0034417957913721064 60 0.0 0.0 0.0 18.314483765049253 0.0034417957913721064 61 0.0 0.0 0.0 18.8218044646975 0.0034417957913721064 62 0.0 0.0 0.0 19.31053946707234 0.0034417957913721064 63 0.0 0.0 0.0 19.812353293454393 0.0034417957913721064 64 0.0 0.0 0.0 20.31485547899472 0.0034417957913721064 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCAAT 15 0.0022209825 70.0 6 TATGGGA 20 7.905357E-5 70.0 2 TAGCGCT 15 0.0022209825 70.0 58 GCAGTAA 15 0.0022209825 70.0 52 TAACACG 15 0.0022209825 70.0 25 CATACCA 15 0.0022209825 70.0 40 TGTAACA 15 0.0022209825 70.0 23 GTAACAC 15 0.0022209825 70.0 24 GGTACCT 20 0.006939877 52.5 60 TTTGTAA 20 0.006939877 52.5 23 TTGTATA 20 0.006939877 52.5 2 TTTCCTT 20 0.006939877 52.5 22 AAGCGGT 20 0.006939877 52.5 11 ATGTAAC 20 0.006939877 52.5 22 TACTGTG 20 0.006939877 52.5 31 CGCTAAT 20 0.006939877 52.5 48 TCCAATT 20 0.006939877 52.5 70 AATTACT 20 0.006939877 52.5 28 GCGGATA 20 0.006939877 52.5 11 ATAACGC 20 0.006939877 52.5 44 >>END_MODULE