##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779722_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 185555 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.392185605346125 34.0 27.0 34.0 12.0 34.0 2 27.91438118078198 34.0 23.0 34.0 12.0 34.0 3 26.818716822505458 32.0 21.0 34.0 11.0 34.0 4 29.128403977257417 34.0 23.0 34.0 12.0 34.0 5 28.764651989976016 34.0 23.0 34.0 11.0 34.0 6 31.115771604106598 37.0 27.0 38.0 11.0 38.0 7 31.998415564118456 37.0 28.0 38.0 12.0 38.0 8 31.24446121096171 37.0 27.0 38.0 11.0 38.0 9 32.66586187383795 37.0 31.0 38.0 12.0 38.0 10-11 32.390016437174964 37.0 31.0 38.0 11.0 38.0 12-13 31.419129099188922 36.0 28.5 38.0 11.0 38.0 14-15 31.412365605885046 36.5 27.5 38.0 11.0 38.0 16-17 31.068745116003342 36.0 27.0 38.0 11.0 38.0 18-19 31.690679313411117 37.0 27.5 38.0 11.5 38.0 20-21 30.532154886691277 35.5 25.0 38.0 11.0 38.0 22-23 30.51899436824661 35.5 26.0 38.0 11.0 38.0 24-25 31.691735603998815 36.5 29.0 38.0 11.0 38.0 26-27 30.2989086793673 35.5 24.5 38.0 11.0 38.0 28-29 32.35828191102369 37.0 31.0 38.0 11.0 38.0 30-31 32.801058985206545 37.5 33.0 38.0 11.0 38.0 32-33 32.90586079599041 38.0 34.0 38.0 11.0 38.0 34-35 32.96528522540487 38.0 34.0 38.0 11.0 38.0 36-37 30.91026919242273 36.5 27.0 38.0 11.0 38.0 38-39 29.18730565061572 34.0 23.0 37.5 11.0 38.0 40-41 30.371329255476812 35.0 25.0 38.0 11.0 38.0 42-43 31.369507693136804 36.5 28.0 38.0 11.0 38.0 44-45 32.979793053272616 37.5 34.0 38.0 11.0 38.0 46-47 31.602516774002318 37.0 29.0 38.0 11.0 38.0 48-49 31.05224327018943 36.5 27.0 38.0 11.0 38.0 50-51 28.872140335749506 34.0 21.5 37.5 11.0 38.0 52-53 32.166769960389104 37.0 29.5 38.0 11.0 38.0 54-55 31.279369998113765 36.5 27.5 38.0 11.0 38.0 56-57 31.673145428579126 37.0 29.0 38.0 11.0 38.0 58-59 32.73723693783515 37.0 33.0 38.0 11.0 38.0 60-61 33.18863409770688 38.0 34.0 38.0 11.0 38.0 62-63 33.09190805960497 38.0 34.0 38.0 11.0 38.0 64-65 32.809404219773114 37.5 32.5 38.0 11.0 38.0 66-67 30.724642289348175 36.5 25.0 38.0 11.0 38.0 68-69 30.83002344318396 36.5 26.0 38.0 11.0 38.0 70-71 30.4701085931395 36.0 25.0 38.0 11.0 38.0 72-73 29.266972056802565 34.0 22.5 37.5 11.0 38.0 74-75 31.37538465684029 36.5 28.0 38.0 11.0 38.0 76 31.798577241249227 37.0 28.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 1.0 4 0.0 5 1.0 6 1.0 7 1.0 8 0.0 9 0.0 10 2.0 11 11.0 12 56.0 13 310.0 14 842.0 15 1486.0 16 2411.0 17 3725.0 18 4815.0 19 5072.0 20 4623.0 21 3772.0 22 3094.0 23 2614.0 24 2540.0 25 2830.0 26 3192.0 27 3664.0 28 4376.0 29 5201.0 30 6401.0 31 8220.0 32 10563.0 33 14311.0 34 19168.0 35 25672.0 36 29759.0 37 16820.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.49634879146345 18.937781250842068 11.204764086120019 29.361105871574466 2 20.96736816577295 17.54466330737517 38.03023362345396 23.457734903397913 3 20.190348901128512 17.76679564978389 36.188387208036474 25.85446824105112 4 14.113950655873762 18.840876510342003 33.36656714487427 33.67860568890997 5 13.817466519360835 30.050928296192502 39.37538735145913 16.756217832987524 6 27.064751690873322 33.839023470130144 17.569992724529115 21.52623211446741 7 27.612298240413896 26.094149982484975 20.231198297000887 26.062353480100242 8 23.990169818540455 31.60963832046176 18.18529676477087 26.214895096226915 9 23.548115892041043 16.343666465465205 19.887686470638958 40.22053117185479 10-11 24.531728730069336 23.62711837003064 27.264422701219893 24.576730198680135 12-13 24.423126153680325 20.007814710518872 28.833856559641063 26.735202576159743 14-15 23.436889488902 22.676453706922338 23.690457905217688 30.19619889895797 16-17 24.808336454743152 23.081006647929225 26.371017507740646 25.739639389586976 18-19 22.172100555919343 23.07321266407435 28.023131418470104 26.731555361536202 20-21 24.211198568583754 22.882719259716357 27.267509384237716 25.63857278746217 22-23 25.129009396465072 21.871640029426267 27.454007981740624 25.54534259236803 24-25 22.1354833320309 24.903732407080554 24.846605102115056 28.11417915877349 26-27 23.097029404156245 24.052017763214625 27.432741226179186 25.41821160644994 28-29 23.081048016577697 24.68707979768311 26.36371230473645 25.868159881002743 30-31 22.573943130618492 24.802476987086898 26.39694310906073 26.22663677323388 32-33 22.78556396002145 24.638438799350038 26.401310701457025 26.17468653917149 34-35 22.932301448931693 24.381233141381994 26.450211667443636 26.236253742242678 36-37 24.27087403495062 22.018890041633544 29.908783465150435 23.801452458265405 38-39 23.720341152535067 21.26544415850389 33.02254139775529 21.991673291205757 40-41 23.32050639460622 23.146965458886427 26.14324133507952 27.389286811427834 42-43 20.933754419246355 23.937764076916444 27.31660127619212 27.81188022764508 44-45 20.85600260848242 22.87892383931964 29.039038310738164 27.22603524145978 46-47 22.967040962335993 21.60648024640458 29.867393161356738 25.559085629902693 48-49 22.943720610625313 22.286745981487222 30.196580390466053 24.572953017421415 50-51 24.733631184957236 20.94599328486508 31.396219907195327 22.92415562298236 52-53 19.592504365447216 23.873876301550006 29.606624700886027 26.926994632116756 54-55 21.866578998426284 22.86820660961045 28.877702804665102 26.387511587298167 56-57 21.67097817299919 23.372675828617623 28.213689032605764 26.742656965777417 58-59 19.855994524342695 24.222507861825886 28.74073355483876 27.18076405899266 60-61 19.624893895094246 23.25954270469826 28.964281383473235 28.151282016734257 62-63 19.556395110699118 23.942861146441892 28.544096406320733 27.956647336538254 64-65 20.18172852280903 24.525805504132276 27.466498519279014 27.825967453779676 66-67 19.033991387626855 25.353953445757675 23.9807164761489 31.631338690466563 68-69 19.25608474165117 25.16131640656586 24.30689199752028 31.275706854262687 70-71 19.42262451730429 25.044665353428925 23.400603083324125 32.13210704594266 72-73 18.872103864747316 25.433982398180532 22.032185568232652 33.6617281688395 74-75 20.425546821737594 25.42933287343809 23.909792265675737 30.235328039148584 76 20.32465992627245 24.346799749929936 24.20451850734042 31.124021816457198 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 1.0 6 2.0 7 1.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 0.5 14 0.0 15 2.0 16 3.0 17 2.0 18 4.5 19 8.5 20 16.5 21 23.0 22 37.5 23 72.5 24 127.5 25 162.0 26 211.0 27 343.5 28 569.0 29 711.0 30 851.0 31 1208.5 32 1727.5 33 2029.0 34 2434.5 35 3280.0 36 4194.5 37 4669.0 38 5349.0 39 6655.5 40 8095.0 41 9449.5 42 9991.0 43 10372.5 44 10979.5 45 11456.5 46 11708.0 47 11612.5 48 11237.5 49 10520.0 50 10082.0 51 9546.5 52 8381.5 53 7192.5 54 6633.0 55 6102.5 56 5116.0 57 4287.5 58 3915.0 59 3687.5 60 3239.5 61 2979.0 62 2939.0 63 2804.5 64 2598.0 65 2501.5 66 2339.0 67 2201.0 68 2138.5 69 2002.5 70 1840.0 71 1751.0 72 1616.5 73 1384.0 74 1198.5 75 1111.0 76 1028.5 77 823.0 78 611.5 79 523.0 80 460.0 81 320.0 82 212.5 83 182.0 84 136.5 85 75.5 86 46.0 87 32.0 88 26.0 89 14.5 90 7.5 91 4.5 92 3.0 93 1.5 94 0.5 95 0.5 96 0.0 97 0.0 98 1.0 99 2.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.38923769232842E-4 4 5.38923769232842E-4 5 0.0 6 0.0 7 0.0 8 0.002155695076931368 9 0.0016167713076985259 10-11 0.002964080730780631 12-13 0.004041928269246315 14-15 0.0018862331923149471 16-17 0.004580852038479157 18-19 0.003503004500013473 20-21 0.0024251569615477892 22-23 0.003503004500013473 24-25 0.0024251569615477892 26-27 0.0016167713076985259 28-29 0.0024251569615477892 30-31 0.0037724663846298943 32-33 0.002964080730780631 34-35 0.0024251569615477892 36-37 0.004041928269246315 38-39 0.004041928269246315 40-41 0.004311390153862736 42-43 0.0016167713076985259 44-45 0.003503004500013473 46-47 0.003503004500013473 48-49 0.004041928269246315 50-51 0.002155695076931368 52-53 0.0037724663846298943 54-55 0.0037724663846298943 56-57 0.00269461884616421 58-59 0.003503004500013473 60-61 0.004041928269246315 62-63 0.0037724663846298943 64-65 0.0018862331923149471 66-67 0.004311390153862736 68-69 0.0269461884616421 70-71 0.004580852038479157 72-73 0.0032335426153970517 74-75 0.002964080730780631 76 0.0037724663846298943 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 185555.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.00888214394142 #Duplication Level Percentage of deduplicated Percentage of total 1 92.5096737483658 81.41672974094398 2 4.853983143204522 8.543872607579303 3 1.3279096166578974 3.5060352285075402 4 0.5604443371242307 1.972963184568232 5 0.2724163227172196 1.1987528020052847 6 0.18131687370635854 0.9574497221238493 7 0.09526876488077494 0.5869148250273692 8 0.06340534321280385 0.44641867024894477 9 0.03959921933898 0.313657472501674 >10 0.09598263079142003 1.0572057464938374 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.001616771307698526 0.0 5 0.0 0.0 0.0 0.00269461884616421 0.0 6 0.0 0.0 0.0 0.00269461884616421 0.0 7 0.0 0.0 0.0 0.00269461884616421 0.0 8 0.0 0.0 0.0 0.00269461884616421 0.0 9 0.0 0.0 0.0 0.0037724663846298943 0.0 10 0.0 0.0 0.0 0.006467085230794104 0.0 11 0.0 0.0 0.0 0.0075449327692597885 0.0 12 0.0 0.0 0.0 0.0075449327692597885 0.0 13 0.0 0.0 0.0 0.008622780307725472 0.0 14 0.0 0.0 0.0 0.010239551615423998 0.0 15 0.0 0.0 0.0 0.01077847538465684 0.0 16 0.0 0.0 0.0 0.01077847538465684 0.0 17 0.0 0.0 0.0 0.01077847538465684 0.0 18 0.0 0.0 5.38923769232842E-4 0.011856322923122524 0.0 19 0.0 0.0 5.38923769232842E-4 0.011856322923122524 0.0 20 0.0 0.0 5.38923769232842E-4 0.014012018000053892 0.0 21 0.0 0.0 5.38923769232842E-4 0.015628789307752418 0.0 22 0.0 0.0 5.38923769232842E-4 0.019401255692382314 0.0 23 0.0 0.0 5.38923769232842E-4 0.025868340923176417 0.0 24 0.0 0.0 5.38923769232842E-4 0.02964080730780631 0.0 25 0.0 0.0 5.38923769232842E-4 0.03179650238473768 0.0 26 0.0 0.0 5.38923769232842E-4 0.03664681630783326 0.0 27 0.0 0.0 5.38923769232842E-4 0.07113793753873515 0.0 28 0.0 0.0 5.38923769232842E-4 0.10670690630810271 0.0 29 0.0 0.0 5.38923769232842E-4 0.13257524723127914 0.0 30 0.0 0.0 5.38923769232842E-4 0.17622807253913933 0.0 31 0.0 0.0 5.38923769232842E-4 0.20047964215461722 0.0 32 0.0 0.0 5.38923769232842E-4 0.24305461992401176 0.0 33 0.0 0.0 5.38923769232842E-4 0.28778529277033765 0.0 34 0.0 0.0 5.38923769232842E-4 0.3476058311551831 0.0 35 0.0 0.0 5.38923769232842E-4 0.46994152677103823 0.0 36 0.0 0.0 5.38923769232842E-4 0.5707202716175797 0.0 37 0.0 0.0 5.38923769232842E-4 0.8919188380803535 0.0 38 0.0 0.0 5.38923769232842E-4 1.1856322923122524 0.0 39 0.0 0.0 5.38923769232842E-4 1.5806634151599257 0.0 40 0.0 0.0 5.38923769232842E-4 2.0285090673924175 0.0 41 0.0 0.0 5.38923769232842E-4 2.5701274554714235 0.0 42 0.0 0.0 5.38923769232842E-4 3.195817951550753 0.0 43 0.0 0.0 5.38923769232842E-4 3.861388806553313 0.0 44 0.0 0.0 5.38923769232842E-4 4.494624235401902 0.0 45 0.0 0.0 5.38923769232842E-4 4.947859125326723 0.0 46 0.0 0.0 5.38923769232842E-4 5.4964835224057556 0.0 47 0.0 0.0 5.38923769232842E-4 6.1130123144081265 0.0 48 0.0 0.0 5.38923769232842E-4 6.544690253563633 0.0 49 0.0 0.0 5.38923769232842E-4 6.944571690334402 0.0 50 0.0 0.0 5.38923769232842E-4 7.54331599795209 0.0 51 0.0 0.0 5.38923769232842E-4 8.234216270108593 0.0 52 0.0 0.0 5.38923769232842E-4 8.88954757349573 0.0 53 0.0 0.0 5.38923769232842E-4 9.746436366575947 0.0 54 0.0 0.0 5.38923769232842E-4 10.495540405809598 0.0 55 0.0 0.0 5.38923769232842E-4 11.013985071811593 0.0 56 0.0 0.0 5.38923769232842E-4 11.490393683813425 0.0 57 0.0 0.0 5.38923769232842E-4 11.888658349276495 0.0 58 0.0 0.0 5.38923769232842E-4 12.280994853278004 0.0 59 0.0 0.0 5.38923769232842E-4 12.73746328581822 0.0 60 0.0 0.0 5.38923769232842E-4 13.044110910511709 0.0 61 0.0 0.0 5.38923769232842E-4 13.377704723666838 0.0 62 0.0 0.0 5.38923769232842E-4 13.605130554283097 0.0 63 0.0 0.0 5.38923769232842E-4 13.91501172159198 0.0 64 0.0 0.0 5.38923769232842E-4 14.28471342728571 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGTATA 20 7.912189E-5 69.998116 48 ATCTCGT 40 1.0608346E-8 61.248352 42 GACGCTT 50 9.749783E-10 55.99849 14 TCGCATA 20 0.0069436375 52.498585 40 CTTAGAT 20 0.0069436375 52.498585 3 CGACGAT 55 2.2700988E-9 50.90772 22 CGTGTAT 35 2.0809812E-5 49.998653 35 TAGATCT 140 0.0 49.998653 39 TCGTTGG 50 6.165101E-8 48.99868 45 TCGGTGG 100 0.0 48.99868 45 ATCTCGG 110 0.0 47.725986 42 GTAGATC 155 0.0 47.41808 38 AGATCTC 135 0.0 46.66541 40 GATCTCG 160 0.0 45.936264 41 TGGTCGC 155 0.0 45.160076 49 TCGTCAT 40 4.580579E-5 43.74882 8 TTCGGTG 40 4.580579E-5 43.74882 44 ACGCTTC 105 0.0 43.332165 15 GCAGTGT 65 9.949872E-9 43.07576 33 GCCGACT 65 9.949872E-9 43.07576 20 >>END_MODULE