##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779721_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 82778 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.68351494358404 34.0 34.0 34.0 34.0 34.0 2 33.68793640822441 34.0 34.0 34.0 34.0 34.0 3 33.70633501655029 34.0 34.0 34.0 34.0 34.0 4 33.727910797554905 34.0 34.0 34.0 34.0 34.0 5 33.73849331948102 34.0 34.0 34.0 34.0 34.0 6 37.41187271980478 38.0 38.0 38.0 37.0 38.0 7 37.4087921911619 38.0 38.0 38.0 37.0 38.0 8 37.32013336876948 38.0 38.0 38.0 36.0 38.0 9 37.33795211288023 38.0 38.0 38.0 37.0 38.0 10-11 37.23941747807389 38.0 38.0 38.0 36.0 38.0 12-13 37.21409070042765 38.0 38.0 38.0 36.0 38.0 14-15 37.24225639662713 38.0 38.0 38.0 36.0 38.0 16-17 37.1380741259755 38.0 38.0 38.0 35.5 38.0 18-19 37.13091038681775 38.0 38.0 38.0 36.0 38.0 20-21 37.166988813452846 38.0 38.0 38.0 36.0 38.0 22-23 37.15521636183527 38.0 38.0 38.0 36.0 38.0 24-25 37.078082340718545 38.0 38.0 38.0 35.5 38.0 26-27 36.95430549179734 38.0 38.0 38.0 35.0 38.0 28-29 36.91510425475368 38.0 37.5 38.0 34.5 38.0 30-31 36.72770542897871 38.0 37.0 38.0 34.5 38.0 32-33 36.79923409601585 38.0 37.0 38.0 34.5 38.0 34-35 36.72803160259973 38.0 37.0 38.0 34.5 38.0 36-37 36.69876054024016 38.0 37.0 38.0 34.0 38.0 38-39 35.39839087680302 38.0 36.0 38.0 29.0 38.0 40-41 36.408194206190046 38.0 37.0 38.0 34.0 38.0 42-43 36.868413104931264 38.0 37.0 38.0 35.0 38.0 44-45 36.87120370146657 38.0 37.5 38.0 34.5 38.0 46-47 36.87872985575878 38.0 37.5 38.0 35.0 38.0 48-49 36.83156756626157 38.0 37.5 38.0 34.5 38.0 50-51 36.71064171639807 38.0 37.0 38.0 34.0 38.0 52-53 36.68791828746768 38.0 37.0 38.0 34.0 38.0 54-55 36.71198869264781 38.0 37.0 38.0 34.0 38.0 56-57 36.713027616033244 38.0 37.0 38.0 34.0 38.0 58-59 36.57183067964918 38.0 37.0 38.0 34.0 38.0 60-61 36.58525212012854 38.0 37.0 38.0 34.0 38.0 62-63 36.68214984657759 38.0 37.0 38.0 34.0 38.0 64-65 36.75623958056488 38.0 37.0 38.0 35.0 38.0 66-67 36.627558046824035 38.0 37.0 38.0 34.0 38.0 68-69 36.266387204329654 38.0 37.0 38.0 34.0 38.0 70-71 33.88023387856677 38.0 33.0 38.0 21.0 38.0 72-73 29.78286501244292 37.0 22.5 38.0 11.0 38.0 74-75 29.273889197612892 37.0 21.0 38.0 11.0 38.0 76 29.001135567421297 36.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 4.0 22 4.0 23 19.0 24 20.0 25 60.0 26 111.0 27 209.0 28 346.0 29 572.0 30 980.0 31 1566.0 32 2372.0 33 3713.0 34 6590.0 35 15556.0 36 16430.0 37 34225.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.85133731184614 11.762787213994057 11.587619899006983 49.798255575152815 2 14.57633670782092 11.446277996569137 52.19985986614801 21.77752542946193 3 14.338350769528136 13.841842035323396 49.525236173862616 22.29457102128585 4 11.34600980936964 38.00647515040228 26.424895503636233 24.222619536591846 5 11.953659184807558 25.400468723573898 49.67745053033414 12.9684215612844 6 22.247457053806567 50.09543598540675 13.431104882939913 14.226002077846772 7 20.144241223513493 21.66034453598782 14.865060764937542 43.33035347556114 8 17.764381840585663 50.4904684819638 11.917417671361957 19.827732006088574 9 16.111768827466236 14.37700838387011 11.373794969677933 58.13742781898572 10-11 19.3614245330885 30.716494720819544 28.677305564280363 21.244775181811594 12-13 18.68310420643166 13.017347604435962 31.792263644929815 36.50728454420257 14-15 18.54115827876972 12.638623788929426 15.523448259199304 53.29676967310155 16-17 34.81903404286163 28.267172437120973 12.47010075140738 24.443692768610017 18-19 35.59883060716616 17.236463794728067 12.691173983425546 34.47353161468023 20-21 19.6797458261857 14.145062697818261 12.426610935272658 53.74858054072338 22-23 19.165720360482254 30.065959554470993 12.47191282707966 38.29640725796709 24-25 34.90178549856242 30.283408635144603 12.4954698108193 22.319336055473677 26-27 36.197419604242675 31.804948174635772 13.589963516876466 18.40766870424509 28-29 34.7580274952282 17.530624078861536 13.86056681727029 33.85078160863998 30-31 36.29647974099399 14.119089613182245 30.214549759597958 19.36988088622581 32-33 21.592693710889364 30.456763874459398 29.73253763077146 18.218004783879774 34-35 32.24709463867212 31.782599241344318 17.61458358501051 18.355722534973058 36-37 21.015245596656115 29.369518471091354 14.734591316533379 34.880644615719156 38-39 17.178477373215106 16.719418202904155 30.471260479837635 35.63084394404311 40-41 17.313174998187925 12.998622822489066 33.087293725385976 36.60090845393704 42-43 33.191790089154125 13.044528739520162 31.86535069704511 21.898330474280606 44-45 18.349078257508033 28.79750658387494 34.052526033487155 18.800889125129867 46-47 32.71702626301675 14.315397811012588 19.781826089057482 33.18574983691319 48-49 31.769914711638357 12.735267824784364 16.7423711614197 38.75244630215758 50-51 18.923506245620818 13.15204522940878 32.767764381840585 35.156684143129816 52-53 15.257073135374133 13.025199932349175 49.1543646862693 22.563362246007394 54-55 15.098214501437578 13.080166227741671 36.49278793882432 35.328831331996426 56-57 31.379714416874048 13.025803957573267 20.666119017130153 34.928362608422525 58-59 17.357268839546737 14.40902172074706 45.987460436347824 22.246249003358383 60-61 31.165285462320906 30.2381067433376 19.752228853076907 18.844378941264587 62-63 15.9239169827732 50.719998067119285 14.084660175408924 19.27142477469859 64-65 14.511706008842928 53.1010655004953 13.225736306748171 19.1614921839136 66-67 14.944188069293773 53.0738843654111 12.946072627992944 19.035854937302183 68-69 14.974389330498441 53.19287733455749 12.953320930682066 18.879412404262002 70-71 15.585662857280921 49.74449733020851 14.13056609244002 20.53927372007055 72-73 16.908478098045375 40.89975597380946 17.15733649037184 25.03442943777332 74-75 17.61277150933823 37.53412742516127 18.97786851578922 25.875232549711274 76 17.5517649617048 37.95815313247481 18.514581168909615 25.975500736910774 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 2.5 15 5.0 16 4.5 17 3.0 18 5.0 19 9.5 20 12.0 21 12.0 22 14.5 23 34.0 24 71.0 25 91.0 26 105.0 27 134.5 28 169.0 29 188.0 30 245.0 31 303.0 32 399.0 33 494.0 34 556.0 35 688.0 36 841.5 37 925.0 38 1014.0 39 1438.0 40 6227.5 41 11006.5 42 11331.0 43 10086.0 44 7254.0 45 4551.0 46 3435.0 47 2831.5 48 2051.0 49 1717.5 50 1561.0 51 1525.0 52 1286.5 53 1045.5 54 1007.0 55 1119.0 56 1224.0 57 1216.5 58 1216.0 59 1216.0 60 1295.0 61 1409.5 62 1445.0 63 1545.5 64 1680.5 65 1638.0 66 1546.5 67 1532.0 68 1490.5 69 1459.5 70 1439.5 71 1409.0 72 1423.5 73 1392.0 74 1239.5 75 1133.0 76 1136.5 77 1003.0 78 829.5 79 793.0 80 667.0 81 454.0 82 291.0 83 215.0 84 190.0 85 127.0 86 61.5 87 34.0 88 25.5 89 14.0 90 6.5 91 1.5 92 1.0 93 1.5 94 1.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 82778.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.96433835076953 #Duplication Level Percentage of deduplicated Percentage of total 1 54.76080384136582 18.599144700282682 2 24.780366352480883 16.832974945033705 3 11.744620309443357 11.966947739737611 4 4.719900409034324 6.412331778975091 5 1.9704783923172684 3.3462997414772038 6 0.8429663880490841 1.7178477373215106 7 0.3841365818957852 0.9132861388291575 8 0.23119331317801886 0.6281862330570925 9 0.13515916770407257 0.41315325327985697 >10 0.3556820202738752 1.8712701442412234 >50 0.017784101013693758 0.42402570731353745 >100 0.035568202027387516 2.585227959119573 >500 0.010670460608216255 2.603348715842374 >1k 0.007113640405477503 5.201865229892 >5k 0.0 0.0 >10k+ 0.0035568202027387516 26.48408997559738 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 21923 26.48408997559738 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2618 3.1626760733528236 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1688 2.039189156539177 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 933 1.1271110681582062 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 683 0.8250984561115272 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 539 0.6511391915726401 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 408 0.4928845828601802 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 337 0.4071130010389234 RNA PCR Primer, Index 24 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 220 0.26577109860107756 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 210 0.2536905941192104 No Hit TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 193 0.23315373650003623 No Hit TATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCT 175 0.21140882843267536 RNA PCR Primer, Index 24 (95% over 22bp) CTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 171 0.20657662663992848 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCG 151 0.18241561767619416 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAACTCGTATGCCGT 140 0.16912706274614028 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCAGCTCGTATGCCGT 135 0.1630868105052067 No Hit CCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 94 0.11355674212955133 No Hit TCTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 83 0.10026818719949745 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.018120756722800745 0.0 2 0.0 0.0 0.0 0.02174490806736089 0.0 3 0.0 0.0 0.0 0.026577109860107757 0.0 4 0.0 0.0 0.0 0.03503346299741477 0.0 5 0.0 0.0 0.0 0.04228176568653507 0.0 6 0.0 0.0 0.0 0.04228176568653507 0.0 7 0.0 0.0 0.0 0.0446978665829085 0.0 8 0.0 0.0 0.0 0.0446978665829085 0.0 9 0.0 0.0 0.0 0.04590591703109522 0.0 10 0.0 0.0 0.0 0.04711396747928193 0.0 11 0.0 0.0 0.0 0.04711396747928193 0.0 12 0.0 0.0 0.0 0.04832201792746865 0.0 13 0.0 0.0 0.0 0.0519461692720288 0.0 14 0.0 0.0 0.0 0.053154219720215515 0.0 15 0.0 0.0 0.0 0.053154219720215515 0.0 16 0.0 0.0 0.0 0.055570320616588946 0.0 17 0.0 0.0 0.0 0.056778371064775665 0.0 18 0.0 0.0 0.0 0.057986421512962384 0.0 19 0.0 0.0 0.0 0.06161057285752253 0.0 20 0.0 0.0 0.0 0.06281862330570924 0.0 21 0.0 0.0 0.0 0.07248302689120298 0.0 22 0.0 0.0 0.0 0.07731522868394984 0.0 23 0.0 0.0 0.0 0.0821474304766967 0.0 24 0.0 0.0 0.0 0.08697963226944357 0.0 25 0.0 0.0 0.0 0.09181183406219044 0.0 26 0.0 0.0 0.0 0.0966440358549373 0.0 27 0.0 0.0 0.0 0.16067070960883326 0.0 28 0.0 0.0 0.0 0.2234893329145425 0.0 29 0.0 0.0 0.0 0.2971804102539322 0.0 30 0.0 0.0 0.0 0.36241513445601486 0.0 31 0.0 0.0 0.0 0.4433545144845249 0.0 32 0.0 0.0 0.0 0.5557032061658895 0.0 33 0.0 0.0 0.0 0.6583874942617604 0.0 34 0.0 0.0 0.0 0.8891251298654231 0.0 35 0.0 0.0 0.0 1.1730169851893015 0.0 36 0.0 0.0 0.0 1.580129986228225 0.0 37 0.0 0.0 0.0 2.1660344535987823 0.0 38 0.0 0.0 0.0 2.801468989344995 0.0 39 0.0 0.0 0.0 3.4707289376404358 0.0 40 0.0 0.0 0.0 4.120660078764889 0.0 41 0.0 0.0 0.0 4.6727391335862185 0.0 42 0.0 0.0 0.0 5.281596559472324 0.0 43 0.0 0.0 0.0 5.912198893425789 0.0 44 0.0 0.0 0.0 6.517432167967335 0.0 45 0.0 0.0 0.0 7.1903162676073356 0.0 46 0.0 0.0 0.0 7.8390393582836015 0.0 47 0.0 0.0 0.0 8.46480949044432 0.0 48 0.0 0.0 0.0 9.039841503781197 0.0 49 0.0 0.0 0.0 9.623329870255382 0.0 50 0.0 0.0 0.0 10.165744521491218 0.0 51 0.0 0.0 0.0 10.773393896929136 0.0 52 0.0 0.0 0.0 11.28681533740849 0.0 53 0.0 0.0 0.0 11.754330860856749 0.0 54 0.0 0.0 0.0 12.213390031167702 0.0 55 0.0 0.0 0.0 12.76546908598903 0.0 56 0.0 0.0 0.0 13.235400710333664 0.0 57 0.0 0.0 0.0 13.677547174370002 0.0 58 0.0 0.0 0.0 14.141438546473701 0.0 59 0.0 0.0 0.0 14.586001111406413 0.0 60 0.0 0.0 0.0 15.001570465582642 0.0 61 0.0 0.0 0.0 15.426804223344368 0.0 62 0.0 0.0 0.0 15.748145642562033 0.0 63 0.0 0.0 0.0 16.13955398777453 0.0 64 0.0 0.0 0.0 16.499553021334172 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCCG 15 0.0022175955 70.0 54 TCTTTAT 90 0.0 58.33333 1 CTTTATA 105 0.0 53.333332 2 CTTTTGC 20 0.006929374 52.5 51 CGACCTT 20 0.006929374 52.5 37 CGTCTTT 20 0.006929374 52.5 48 TTGTACT 20 0.006929374 52.5 4 CATAATT 20 0.006929374 52.5 23 TTTGCTT 20 0.006929374 52.5 53 TAATGCC 20 0.006929374 52.5 53 TCTCGTA 3325 0.0 48.842106 38 CTCGTAT 3440 0.0 48.735466 39 CATCTCG 3320 0.0 48.704815 36 GTATGCC 3465 0.0 48.686867 42 ATGCCGT 3445 0.0 48.66473 44 ATCTCGT 3330 0.0 48.663662 37 TATGCCG 3460 0.0 48.656067 43 CTTGAAA 3430 0.0 48.571434 57 CGTATGC 3475 0.0 48.54676 41 GCTTGAA 3440 0.0 48.53198 56 >>END_MODULE