##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779720_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 61739 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality warn #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 22.928635060496607 23.0 12.0 33.0 12.0 34.0 2 23.636356273992128 23.0 12.0 33.0 12.0 34.0 3 23.42909668119017 23.0 11.0 32.0 11.0 34.0 4 23.04668038031066 23.0 12.0 33.0 11.0 34.0 5 23.325385898702603 23.0 11.0 33.0 11.0 34.0 6 24.225351884546235 26.0 12.0 34.0 11.0 38.0 7 25.233482887639905 27.0 12.0 36.0 12.0 38.0 8 24.5247898411053 26.0 11.0 36.0 11.0 38.0 9 26.00709438118531 28.0 12.0 37.0 12.0 38.0 10-11 24.981567566692043 26.5 11.0 36.0 11.0 38.0 12-13 25.42208328609145 27.0 11.0 35.5 11.0 38.0 14-15 24.245031503587683 26.0 11.0 35.0 11.0 38.0 16-17 24.32902217399051 26.0 11.0 35.0 11.0 38.0 18-19 24.76756183287711 26.0 11.5 35.0 11.0 38.0 20-21 23.89305787265748 24.5 11.0 34.0 11.0 37.5 22-23 24.07901812468618 24.5 11.0 35.0 11.0 37.5 24-25 24.114967848523627 25.0 11.0 35.0 11.0 38.0 26-27 23.33923451950955 23.0 11.0 34.0 10.0 38.0 28-29 24.02806167900355 25.5 11.0 35.5 11.0 38.0 30-31 24.423573430084712 26.0 11.0 36.0 11.0 38.0 32-33 24.667438734025495 26.0 11.0 37.0 11.0 38.0 34-35 24.76638753462155 26.0 11.0 37.0 11.0 38.0 36-37 24.09851957433713 24.5 11.0 34.0 11.0 38.0 38-39 24.02124265051264 25.0 11.0 34.0 11.0 37.0 40-41 23.336165146827774 24.5 11.0 34.0 11.0 37.0 42-43 23.849811302418246 25.5 11.0 34.5 11.0 38.0 44-45 24.70639304167544 26.0 11.0 36.5 11.0 38.0 46-47 24.227271254798424 25.0 11.0 35.5 11.0 38.0 48-49 23.524336319020392 24.0 11.0 34.0 11.0 38.0 50-51 22.859213787071383 23.0 11.0 33.5 11.0 37.0 52-53 23.644349600738593 24.0 11.0 35.0 11.0 37.5 54-55 23.42611639320365 24.0 11.0 34.5 11.0 38.0 56-57 23.803835501060917 24.0 11.0 35.0 11.0 38.0 58-59 24.001838384165602 24.5 11.0 36.0 11.0 38.0 60-61 24.610100584719547 25.5 11.0 37.0 11.0 38.0 62-63 24.64631756264274 25.5 11.0 36.5 11.0 38.0 64-65 24.55459272097054 25.5 11.0 36.5 11.0 38.0 66-67 23.811974602763247 24.5 11.0 34.0 11.0 38.0 68-69 23.57776284034403 24.0 11.0 34.0 11.0 38.0 70-71 23.498542250441375 24.0 11.0 34.0 11.0 38.0 72-73 23.223602585075884 24.0 11.0 34.0 11.0 37.0 74-75 23.152958421743143 23.5 11.0 34.0 11.0 37.5 76 22.826641183044753 23.0 11.0 34.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores fail #Quality Count 3 1.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 1.0 11 14.0 12 67.0 13 391.0 14 1119.0 15 1940.0 16 3028.0 17 4796.0 18 6350.0 19 6366.0 20 5415.0 21 4096.0 22 2865.0 23 2074.0 24 1526.0 25 1280.0 26 1082.0 27 1065.0 28 1087.0 29 1115.0 30 1270.0 31 1451.0 32 1651.0 33 2120.0 34 2456.0 35 2876.0 36 2904.0 37 1333.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.514844749672008 15.711300798522815 16.856444062909993 40.917410388895185 2 14.30214289185118 12.08312411927631 51.00341761285411 22.6113153760184 3 14.172565153306662 11.148544680023972 49.70925994914074 24.96963021752863 4 13.608901990638008 24.750967783734755 25.036038808532695 36.604091417094544 5 12.876787767861481 21.20053774761496 44.55206595506892 21.37060852945464 6 22.407230437810785 33.785775603751276 15.209187061662806 28.597806896775136 7 20.67250846304605 18.723983219682857 18.743419880464536 41.860088436806556 8 17.729761249149632 35.253814506462795 15.892967054326345 31.123457190061227 9 17.368557452460397 14.96323172114419 16.571641452589976 51.09656937380544 10-11 19.884187082405344 21.61328204089897 28.591212796112575 29.911318080583115 12-13 17.705751818196543 14.54881189562175 34.3999546463223 33.3454816398594 14-15 24.748129191097863 20.84858596002462 21.549126955845672 32.85415789303185 16-17 29.909130667184996 15.728007515752305 21.177737823347424 33.18512399371528 18-19 18.533306337315246 14.980360396841466 30.69528244583924 35.79105082000405 20-21 29.746912330431265 14.797327394209352 22.605385705608423 32.85037456975096 22-23 31.767307007029704 13.481162331141276 20.966017687647803 33.785512974181216 24-25 19.84515209433412 22.312838122388158 19.300916777349446 38.54109300592828 26-27 28.537529560400404 21.06239269169717 21.271340179468073 29.128737568434353 28-29 21.845540833846254 20.38047879749911 23.00690012634034 34.76708024231429 30-31 20.61162673923255 20.73472957869673 24.675640215753923 33.9780034663168 32-33 22.405163756519485 18.598756033561177 24.808869739868477 34.18721047005086 34-35 21.03323722828728 18.998833781463603 25.045352943082055 34.922576047167055 36-37 28.898157521765537 13.398663697104677 30.47094553553351 27.232233245596277 38-39 28.627657420530472 11.033002632111764 36.886819194168865 23.452520753188903 40-41 23.859080785584126 23.209556590402915 22.994128366066004 29.937234257946955 42-43 16.565296618748736 23.72949989876493 27.404737801174328 32.300465681312005 44-45 17.250455557805225 15.636363636363637 31.82020651953837 35.292974286292775 46-47 28.27594026369497 14.705691794356799 25.481065146263244 31.53730279568499 48-49 26.90909090909091 15.250050617533914 30.1056894108119 27.73516906256327 50-51 40.404130390767364 12.561247216035634 23.80643855031383 23.228183842883173 52-53 16.80029803845344 18.501870839205015 30.412070557364302 34.28576056497724 54-55 26.812122390138814 15.593566256863795 24.482887085540277 33.11142426745712 56-57 26.767145032232985 16.362693964819076 23.417506236029674 33.452654766918265 58-59 17.633529054464468 19.922251467908485 28.840656003239523 33.60356347438753 60-61 17.3346831342377 17.708847944928124 28.47135047580482 36.48511844502936 62-63 17.272322332455964 20.498076533711277 27.876088276979143 34.35351285685361 64-65 17.324964567726262 22.321117635148816 27.347236282648307 33.00668151447662 66-67 14.874386510520434 33.294458752449906 18.38200754814779 33.449147188881874 68-69 15.755066992855177 31.71913225215884 18.497156651491338 34.02864410349464 70-71 14.821623810487953 32.801781737193764 17.282850779510024 35.09374367280826 72-73 13.544551889466607 37.24670780893143 16.257673680288967 32.95106662131299 74-75 16.607679411693244 25.9230763000818 20.723558996703733 36.74568529152123 76 16.66909632797188 23.444611821112137 22.59261059008374 37.29368126083224 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 1.5 17 3.0 18 3.0 19 5.0 20 7.5 21 8.0 22 11.0 23 21.5 24 44.5 25 60.0 26 72.5 27 111.0 28 159.5 29 182.0 30 205.0 31 322.5 32 457.0 33 497.0 34 593.0 35 749.5 36 932.0 37 1054.0 38 1181.5 39 1435.5 40 1695.0 41 1940.5 42 2053.0 43 2194.0 44 2358.0 45 2469.5 46 2558.0 47 2571.5 48 2608.5 49 2579.0 50 2526.0 51 2463.5 52 2350.5 53 2261.5 54 2223.0 55 2154.0 56 2101.0 57 2049.5 58 1982.0 59 1913.5 60 1872.5 61 1862.5 62 1825.0 63 1835.0 64 1865.0 65 1793.0 66 1662.0 67 1623.0 68 1591.0 69 1528.5 70 1401.5 71 1305.0 72 1278.5 73 1143.5 74 977.5 75 920.0 76 804.5 77 617.0 78 494.0 79 443.0 80 369.5 81 255.0 82 162.0 83 110.0 84 92.5 85 55.5 86 26.0 87 16.0 88 13.5 89 8.0 90 4.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0016197217318064756 9 0.0016197217318064756 10-11 0.0024295825977097133 12-13 0.0032394434636129513 14-15 0.0016197217318064756 16-17 0.0032394434636129513 18-19 0.0024295825977097133 20-21 0.0024295825977097133 22-23 0.0016197217318064756 24-25 0.0016197217318064756 26-27 0.0016197217318064756 28-29 0.0016197217318064756 30-31 0.0032394434636129513 32-33 0.0016197217318064756 34-35 0.0016197217318064756 36-37 0.0024295825977097133 38-39 0.0024295825977097133 40-41 0.0024295825977097133 42-43 0.0024295825977097133 44-45 0.0024295825977097133 46-47 0.0016197217318064756 48-49 0.0024295825977097133 50-51 0.0024295825977097133 52-53 0.0032394434636129513 54-55 0.0032394434636129513 56-57 0.0016197217318064756 58-59 0.0024295825977097133 60-61 0.0024295825977097133 62-63 0.0024295825977097133 64-65 0.0024295825977097133 66-67 0.0032394434636129513 68-69 0.02591554770890361 70-71 0.0024295825977097133 72-73 0.0032394434636129513 74-75 0.004049304329516189 76 0.0032394434636129513 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 61739.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 99.29218160320058 #Duplication Level Percentage of deduplicated Percentage of total 1 99.37359303122247 98.67020845818688 2 0.551368633976053 1.0949318907011776 3 0.06851326221004209 0.20408493820761592 4 0.004893804443574435 0.019436660781677707 5 0.0 0.0 6 0.0 0.0 7 0.001631268147858145 0.01133805212264533 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0032394434636129513 0.0 6 0.0 0.0 0.0 0.0032394434636129513 0.0 7 0.0 0.0 0.0 0.0032394434636129513 0.0 8 0.0 0.0 0.0 0.0032394434636129513 0.0 9 0.0 0.0 0.0 0.0032394434636129513 0.0 10 0.0 0.0 0.0 0.004859165195419427 0.0 11 0.0 0.0 0.0 0.008098608659032377 0.0 12 0.0 0.0 0.0 0.008098608659032377 0.0 13 0.0 0.0 0.0 0.009718330390838853 0.0 14 0.0 0.0 0.0 0.017816939049871233 0.0 15 0.0 0.0 0.0 0.017816939049871233 0.0 16 0.0 0.0 0.0 0.021056382513484184 0.0 17 0.0 0.0 0.0 0.024295825977097136 0.0 18 0.0 0.0 0.0 0.02915499117251656 0.0 19 0.0 0.0 0.0 0.03887332156335541 0.0 20 0.0 0.0 0.0 0.04697193022238779 0.0 21 0.0 0.0 0.0 0.04859165195419427 0.0 22 0.0 0.0 0.0 0.0728874779312914 0.0 23 0.0 0.0 0.0 0.07612692139490436 0.0 24 0.0 0.0 0.0 0.08422553005393674 0.0 25 0.0016197217318064756 0.0 0.0 0.09718330390838854 0.0 26 0.0016197217318064756 0.0 0.0 0.10042274737200149 0.0 27 0.0016197217318064756 0.0 0.0 0.1392960689353569 0.0 28 0.0016197217318064756 0.0 0.0 0.19760605128039002 0.0 29 0.0016197217318064756 0.0 0.0 0.2251413207211001 0.0 30 0.0016197217318064756 0.0 0.0 0.27535269440710086 0.0 31 0.0016197217318064756 0.0 0.0 0.2980287986523915 0.0 32 0.0016197217318064756 0.0 0.0 0.3514796158020052 0.0 33 0.0016197217318064756 0.0 0.0 0.4373248675877484 0.0 34 0.0016197217318064756 0.0 0.0 0.5085926237872334 0.0 35 0.0016197217318064756 0.0 0.0 0.6300717536727191 0.0 36 0.0016197217318064756 0.0 0.0 0.7483114400945917 0.0032394434636129513 37 0.0016197217318064756 0.0 0.0 1.0576782908696285 0.0032394434636129513 38 0.0016197217318064756 0.0 0.0 1.2844393333225352 0.0032394434636129513 39 0.0016197217318064756 0.0 0.0 1.5500736973387972 0.0032394434636129513 40 0.0016197217318064756 0.0 0.0 1.8740180437000924 0.0032394434636129513 41 0.0016197217318064756 0.0 0.0 2.1542299033026127 0.0032394434636129513 42 0.0016197217318064756 0.0 0.0 2.4150051021234553 0.0032394434636129513 43 0.0016197217318064756 0.0 0.0 2.687118353066943 0.0032394434636129513 44 0.0016197217318064756 0.0 0.0 2.9576118822786244 0.0032394434636129513 45 0.0016197217318064756 0.0 0.0 3.1325418293137237 0.0032394434636129513 46 0.0016197217318064756 0.0 0.0 3.3414859327167594 0.0032394434636129513 47 0.0016197217318064756 0.0 0.0 3.592542801146763 0.0032394434636129513 48 0.0016197217318064756 0.0 0.0 3.7512755308637975 0.0032394434636129513 49 0.0016197217318064756 0.0 0.0 3.8711349390174767 0.0032394434636129513 50 0.0016197217318064756 0.0 0.0 4.078459320688705 0.0032394434636129513 51 0.0016197217318064756 0.0 0.0 4.323037302191484 0.0032394434636129513 52 0.0016197217318064756 0.0 0.0 4.520643353471874 0.0032394434636129513 53 0.0016197217318064756 0.0 0.0 4.723108569947683 0.0032394434636129513 54 0.0016197217318064756 0.0 0.0 4.967686551450461 0.0032394434636129513 55 0.0016197217318064756 0.0 0.0 5.1393770550219475 0.0032394434636129513 56 0.0016197217318064756 0.0 0.0 5.311067558593433 0.0032394434636129513 57 0.0016197217318064756 0.0 0.0 5.471420010042275 0.0032394434636129513 58 0.0016197217318064756 0.0 0.0 5.604237192050406 0.0032394434636129513 59 0.0016197217318064756 0.0 0.0 5.754871313108408 0.0032394434636129513 60 0.0016197217318064756 0.0 0.0 5.861772947407635 0.0032394434636129513 61 0.0016197217318064756 0.0 0.0 5.968674581706863 0.0032394434636129513 62 0.0016197217318064756 0.0 0.0 6.036702894442735 0.0032394434636129513 63 0.0016197217318064756 0.0 0.0 6.145224250473769 0.0032394434636129513 64 0.0016197217318064756 0.0 0.0 6.234308945723125 0.0032394434636129513 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATTACA 25 2.8092363E-6 70.00001 61 GTGTTTG 15 0.0022149123 70.0 48 TTTAGAC 15 0.0022149123 70.0 37 GTTTCGA 15 0.0022149123 70.0 36 GTTTCAA 15 0.0022149123 70.0 36 CCTAGGT 15 0.0022149123 70.0 43 TCAGGTG 15 0.0022149123 70.0 44 ATGTATC 15 0.0022149123 70.0 28 TTAAGTA 15 0.0022149123 70.0 2 AGTCTCA 15 0.0022149123 70.0 56 GACGAAT 15 0.0022149123 70.0 23 CGTTTCG 15 0.0022149123 70.0 35 GTCTATA 20 7.8693985E-5 69.99999 36 CCGTATG 20 7.8693985E-5 69.99999 24 TTAAGGT 20 7.8693985E-5 69.99999 43 TCGGTGG 110 0.0 63.636368 45 GTGTATA 40 1.0450094E-8 61.249996 36 GTTTAGA 35 2.929719E-7 60.0 36 TTAGTGT 35 2.929719E-7 60.0 33 CGTGTAT 35 2.929719E-7 60.0 35 >>END_MODULE