##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779719_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 225758 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.331093471770657 34.0 24.0 34.0 12.0 34.0 2 27.881248947988553 34.0 23.0 34.0 12.0 34.0 3 26.75712931546169 32.0 21.0 34.0 11.0 34.0 4 29.086287086171918 34.0 23.0 34.0 12.0 34.0 5 28.716559324586505 34.0 23.0 34.0 11.0 34.0 6 30.941295546558706 36.0 26.0 38.0 11.0 38.0 7 31.9990786594495 37.0 28.0 38.0 12.0 38.0 8 31.173996048866485 37.0 27.0 38.0 11.0 38.0 9 32.64371583731252 37.0 31.0 38.0 12.0 38.0 10-11 32.352078331664885 37.0 31.0 38.0 11.0 38.0 12-13 31.411057415462572 36.0 28.5 38.0 11.0 38.0 14-15 31.382646462140876 36.5 27.0 38.0 11.0 38.0 16-17 31.061390958459942 36.0 27.0 38.0 11.0 38.0 18-19 31.66506834752257 37.0 27.5 38.0 11.5 38.0 20-21 30.541170191089577 35.5 25.0 38.0 11.0 38.0 22-23 30.529119676822084 35.5 26.0 38.0 11.0 38.0 24-25 31.666855659600103 36.5 29.0 38.0 11.0 38.0 26-27 30.277166257674146 35.5 24.5 38.0 11.0 38.0 28-29 32.31591350029678 37.0 31.0 38.0 11.0 38.0 30-31 32.7489014785744 37.5 32.5 38.0 11.0 38.0 32-33 32.86552857484563 38.0 34.0 38.0 11.0 38.0 34-35 32.910718557038955 38.0 34.0 38.0 11.0 38.0 36-37 30.869847358676104 36.5 26.5 38.0 11.0 38.0 38-39 29.170297398098846 34.0 23.0 37.5 11.0 38.0 40-41 30.315778399879516 35.0 25.0 38.0 11.0 38.0 42-43 31.31191364204148 36.5 28.0 38.0 11.0 38.0 44-45 32.935814013235415 37.5 33.5 38.0 11.0 38.0 46-47 31.537356372753123 37.0 28.5 38.0 11.0 38.0 48-49 31.02504008717299 36.5 27.0 38.0 11.0 38.0 50-51 28.881791564418535 34.0 22.0 37.5 11.0 38.0 52-53 32.09495787524695 37.0 29.5 38.0 11.0 38.0 54-55 31.202269687009984 36.5 27.0 38.0 11.0 38.0 56-57 31.63658652185083 37.0 28.5 38.0 11.0 38.0 58-59 32.65597453910825 37.0 32.5 38.0 11.0 38.0 60-61 33.12562788472612 38.0 34.0 38.0 11.0 38.0 62-63 33.0129209153164 38.0 34.0 38.0 11.0 38.0 64-65 32.74984496673429 37.5 32.5 38.0 11.0 38.0 66-67 30.697047280716518 36.5 25.0 38.0 11.0 38.0 68-69 30.768316072963085 36.5 25.5 38.0 11.0 38.0 70-71 30.395328183275897 35.5 25.0 38.0 11.0 38.0 72-73 29.208143233019427 34.0 22.5 37.5 11.0 38.0 74-75 31.257499180538453 36.5 28.0 38.0 11.0 38.0 76 31.619464205033708 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 4.0 4 2.0 5 1.0 6 3.0 7 2.0 8 0.0 9 0.0 10 3.0 11 16.0 12 73.0 13 386.0 14 994.0 15 1714.0 16 2965.0 17 4707.0 18 5957.0 19 6311.0 20 5647.0 21 4623.0 22 3731.0 23 3428.0 24 3263.0 25 3353.0 26 3772.0 27 4496.0 28 5440.0 29 6353.0 30 7857.0 31 10014.0 32 13052.0 33 17135.0 34 23119.0 35 30732.0 36 35864.0 37 20741.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.1330539781536 18.342650094348816 11.583199709423365 30.94109621807422 2 20.298284003224694 17.171484509961996 38.49210216249258 24.038129324320735 3 19.725989776663507 17.450544388238733 35.61601360749121 27.207452227606556 4 14.343741279340176 18.2373082562224 33.2344069065411 34.184543557896326 5 14.420308471903542 29.469609050399097 39.07148362405762 17.038598853639737 6 27.988376934593678 32.69474392934027 17.34157815005448 21.97530098601157 7 28.13898067842557 25.38381807067745 20.67612221936764 25.80107903152934 8 23.74464013607853 31.56251107409901 18.792303058223183 25.90054573159928 9 23.331768166273896 15.549196449137979 20.15388840654181 40.96514697804632 10-11 25.013178703215605 23.19673256756577 27.135060666332954 24.65502806288567 12-13 24.229637898803034 19.733274858464238 29.059573487848745 26.97751375488398 14-15 23.661560678278434 22.468859081808034 23.590685188794584 30.278895051118948 16-17 24.887979285858258 22.93750096903732 26.263680038274206 25.91083970683022 18-19 22.272550079294064 22.83181685286743 28.06123805051785 26.834395017320656 20-21 24.241296672824003 22.660987742915744 27.369577447319344 25.72813813694091 22-23 25.04994662024178 21.609720874807856 27.56986989514532 25.77046260980504 24-25 22.54332827606064 24.86162637459994 24.167045039258465 28.428000310080954 26-27 23.459696745529364 23.816062830286466 26.970201682384577 25.754038741799594 28-29 23.311288200612186 24.43753903671777 26.096461113891976 26.15471164877807 30-31 22.964029414370515 24.432311508815452 26.23150527155134 26.372153805262695 32-33 23.2220654583792 24.012553904490215 26.105388123403905 26.65999251372668 34-35 23.26927847473244 23.887899567651854 26.520527677369053 26.32229428024665 36-37 24.281809684549994 21.88326444908103 29.932090315892996 23.902835550475988 38-39 23.798238250388167 21.107992991984194 32.909323274630495 22.184445482997145 40-41 23.198164276031928 23.003030007707913 26.01000256930478 27.788803146955377 42-43 21.081016431857293 23.358973734277445 27.356750040420728 28.203259793444534 44-45 20.96561989182293 21.935315250663372 29.718571283019035 27.380493574494665 46-47 23.094301509674676 21.07940853356014 30.05949216811964 25.766797788645547 48-49 22.438695930486247 21.939004914957287 30.542062864496465 25.080236290060004 50-51 24.510348951815637 20.627692443991627 31.73700705434169 23.12495154985105 52-53 19.58917702509945 23.64269830160094 29.484765794579655 27.283358878719955 54-55 21.413699770976475 22.833025458379293 28.894175183063776 26.85909958758046 56-57 21.46709458217329 22.98495429587744 28.21163655532447 27.336314566624804 58-59 19.601228828294058 23.660481918637746 28.99219689603466 27.746092357033536 60-61 19.514707185257375 23.03357845308762 28.944803756534064 28.506910605120932 62-63 19.741117527061057 23.915841046870398 28.057783418497873 28.285258007570675 64-65 20.13196130198274 23.906081116997715 27.200905434378157 28.761052146641386 66-67 19.164252363359292 24.502742116967458 23.715989332766306 32.617016186906945 68-69 19.58518505390113 24.830631261326328 23.585787647713026 31.998396037059518 70-71 19.543587948914453 24.73719649683927 22.778075565143816 32.94113998910246 72-73 19.064779273821838 25.36241353571642 21.45465982409239 34.11814736636935 74-75 20.40700610420561 25.39181203653664 23.05821587093459 31.142965988323162 76 20.38751517191888 24.357463698138616 23.35722449124237 31.897796638700132 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.5 2 1.0 3 1.0 4 1.0 5 1.0 6 0.5 7 0.0 8 0.0 9 1.0 10 1.0 11 1.0 12 2.0 13 3.5 14 3.0 15 5.0 16 8.0 17 7.0 18 10.5 19 26.5 20 49.5 21 60.0 22 82.0 23 131.5 24 207.5 25 256.0 26 325.5 27 492.0 28 754.0 29 919.0 30 1136.0 31 1607.5 32 2219.5 33 2577.0 34 2996.0 35 3998.0 36 5102.5 37 5624.0 38 6412.0 39 7857.5 40 9177.5 41 10463.0 42 11086.0 43 11635.5 44 12561.0 45 13047.5 46 13158.0 47 13076.5 48 12890.5 49 12350.0 50 11914.0 51 11359.5 52 10298.0 53 9060.5 54 8330.0 55 7822.5 56 6778.5 57 5835.0 58 5428.0 59 5052.5 60 4494.0 61 4172.5 62 4034.0 63 3864.5 64 3582.0 65 3355.5 66 3115.0 67 2988.0 68 2858.0 69 2585.5 70 2345.5 71 2248.0 72 2098.5 73 1869.5 74 1638.5 75 1487.0 76 1341.0 77 1070.5 78 806.0 79 666.0 80 597.0 81 444.5 82 296.0 83 231.0 84 179.5 85 93.0 86 47.5 87 37.0 88 29.5 89 14.5 90 6.5 91 3.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 1.0 98 1.5 99 1.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 4.4295218774085523E-4 5 0.0 6 0.0 7 0.0 8 0.0026577131264451316 9 0.0044295218774085526 10-11 0.006644282816112828 12-13 0.008859043754817105 14-15 0.0044295218774085526 16-17 0.008194615473205822 18-19 0.007087235003853684 20-21 0.0048724740651494075 22-23 0.0075301871915945395 24-25 0.0046509979712789805 26-27 0.0031006653141859865 28-29 0.003986569689667698 30-31 0.007973139379335395 32-33 0.005093950159019835 34-35 0.006201330628371973 36-37 0.0075301871915945395 38-39 0.0073087110977241125 40-41 0.007087235003853684 42-43 0.003322141408056414 44-45 0.0075301871915945395 46-47 0.006201330628371973 48-49 0.008194615473205822 50-51 0.0046509979712789805 52-53 0.007087235003853684 54-55 0.0075301871915945395 56-57 0.00553690234676069 58-59 0.006422806722242401 60-61 0.007973139379335395 62-63 0.008194615473205822 64-65 0.0044295218774085526 66-67 0.008859043754817105 68-69 0.029677796578637304 70-71 0.00841609156707625 72-73 0.006422806722242401 74-75 0.005315426252890263 76 0.005315426252890263 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 225758.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 94.37372972523906 #Duplication Level Percentage of deduplicated Percentage of total 1 96.50651673571934 91.07679927141037 2 2.406628140075322 4.542449472812464 3 0.5567030115085025 1.576144186359902 4 0.23511842972155217 0.8875601255985752 5 0.12356237344756389 0.5830521017974725 6 0.05489361175577302 0.3108308927688917 7 0.03960678025304139 0.2616487702421224 8 0.025292933090130316 0.19095907451252112 9 0.01493441953825067 0.12684751857955784 >10 0.036743564890497384 0.4437085859181184 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.4295218774085523E-4 0.0 2 0.0 0.0 0.0 4.4295218774085523E-4 0.0 3 0.0 0.0 0.0 4.4295218774085523E-4 0.0 4 0.0 0.0 0.0 0.003986569689667698 0.0 5 0.0 0.0 0.0 0.0048724740651494075 0.0 6 0.0 0.0 0.0 0.0048724740651494075 0.0 7 0.0 0.0 0.0 0.005315426252890263 0.0 8 0.0 0.0 0.0 0.006201330628371974 0.0 9 0.0 0.0 0.0 0.006644282816112829 0.0 10 0.0 0.0 0.0 0.0075301871915945395 0.0 11 0.0 0.0 0.0 0.00841609156707625 0.0 12 0.0 0.0 0.0 0.008859043754817105 0.0 13 0.0 0.0 0.0 0.009301995942557961 0.0 14 0.0 0.0 0.0 0.011516756881262236 0.0 15 0.0 0.0 0.0 0.012402661256743948 0.0 16 0.0 0.0 0.0 0.012845613444484802 0.0 17 0.0 0.0 0.0 0.013731517819966513 0.0 18 0.0 0.0 0.0 0.014617422195448223 0.0 19 0.0 0.0 0.0 0.017275135321893356 0.0 20 0.0 0.0 0.0 0.019046944072856776 0.0 21 0.0 0.0 0.0 0.02037580063607934 0.0 22 0.0 0.0 0.0 0.028348940015414735 0.0 23 0.0 0.0 0.0 0.032335509705082435 0.0 24 0.0 0.0 0.0 0.035879127207009275 0.0 25 0.0 0.0 0.0 0.0376509359579727 0.0 26 0.0 0.0 0.0 0.04562407533730809 0.0 27 0.0 0.0 0.0 0.0930199594255796 0.0 28 0.0 0.0 0.0 0.13244270413451573 0.0 29 0.0 0.0 0.0 0.162120500713153 0.0 30 0.0 0.0 0.0 0.21261705011561052 0.0 31 0.0 0.0 0.0 0.23033513762524474 0.0 32 0.0 0.0 0.0 0.2741874042115894 0.0 33 0.0 0.0 0.0 0.3286705233037146 0.0 34 0.0 0.0 0.0 0.38448249895906234 0.0 35 0.0 0.0 0.0 0.5138245377793921 0.0 36 0.0 0.0 0.0 0.6254484890900877 0.0 37 0.0 0.0 0.0 0.960763295209915 0.0 38 0.0 0.0 0.0 1.291205627264593 0.0 39 0.0 0.0 0.0 1.7372584803196343 0.0 40 0.0 0.0 0.0 2.3343580293943074 0.0 41 0.0 0.0 0.0 3.078517704798944 0.0 42 0.0 0.0 0.0 3.8532410811577 0.0 43 0.0 0.0 0.0 4.707252899122069 0.0 44 0.0 0.0 0.0 5.4788756101666385 4.4295218774085523E-4 45 0.0 0.0 0.0 6.0272504185898175 4.4295218774085523E-4 46 0.0 0.0 0.0 6.655356620806351 4.4295218774085523E-4 47 0.0 0.0 0.0 7.342818416180157 4.4295218774085523E-4 48 0.0 0.0 0.0 7.798616217365497 4.4295218774085523E-4 49 0.0 0.0 0.0 8.216320130405125 4.4295218774085523E-4 50 0.0 0.0 0.0 8.841768619495213 4.4295218774085523E-4 51 0.0 0.0 0.0 9.601874573658518 4.4295218774085523E-4 52 0.0 0.0 0.0 10.279591420902028 4.4295218774085523E-4 53 0.0 0.0 0.0 11.210676919533306 4.4295218774085523E-4 54 0.0 0.0 0.0 12.09303767751309 4.4295218774085523E-4 55 0.0 0.0 0.0 12.593573649660255 4.4295218774085523E-4 56 0.0 0.0 0.0 13.17561282435174 4.4295218774085523E-4 57 0.0 0.0 0.0 13.599518068019737 4.4295218774085523E-4 58 0.0 0.0 0.0 13.979128092913651 4.4295218774085523E-4 59 0.0 0.0 0.0 14.468147308179555 4.4295218774085523E-4 60 0.0 0.0 0.0 14.754737373647888 4.4295218774085523E-4 61 0.0 0.0 0.0 15.075434757572268 4.4295218774085523E-4 62 0.0 0.0 0.0 15.323487982707146 4.4295218774085523E-4 63 0.0 0.0 0.0 15.653930314761825 4.4295218774085523E-4 64 0.0 0.0 0.0 16.006520256203544 4.4295218774085523E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCAATCG 20 0.006940581 52.50814 66 GCGTATA 20 0.006940581 52.50814 36 TCGTTTA 50 6.164191E-8 49.0076 34 AGTGTCG 30 5.864828E-4 46.673904 35 ATCTCGG 185 0.0 45.40239 42 CTTCCGA 80 2.910383E-11 43.74709 18 CGTGTAT 65 9.949872E-9 43.0836 35 TCTCGGT 200 0.0 41.997208 43 CTCGTTT 60 2.5842928E-7 40.839664 33 GTCGATT 35 0.0012526709 40.006203 38 CGCCGTA 105 0.0 39.997345 53 TACGGGG 35 0.0012540366 39.99734 30 ACCGTAG 35 0.0012540366 39.99734 14 CTCGGTG 185 0.0 39.727093 44 TCGGTGG 205 0.0 39.265682 45 GTGTCGA 90 1.03682396E-10 38.894924 36 TCCGACT 55 6.678374E-6 38.17928 20 TGTCGAT 75 3.5157427E-8 37.33912 37 CTCGGTT 75 3.522655E-8 37.330853 44 ACGCTTC 85 2.561137E-9 37.056362 15 >>END_MODULE