##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779718_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 171951 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.50797610947305 34.0 27.0 34.0 12.0 34.0 2 28.14069124343563 34.0 23.0 34.0 12.0 34.0 3 27.002553052904606 32.0 23.0 34.0 11.0 34.0 4 29.335194328616872 34.0 24.0 34.0 12.0 34.0 5 28.918540747073294 34.0 23.0 34.0 11.0 34.0 6 31.339701426569196 37.0 27.0 38.0 11.0 38.0 7 32.339271071409875 37.0 31.0 38.0 12.0 38.0 8 31.5370483451681 37.0 27.0 38.0 11.0 38.0 9 32.9477990822967 37.0 33.0 38.0 12.0 38.0 10-11 32.648120685544136 37.0 31.5 38.0 11.0 38.0 12-13 31.6840698803729 37.0 29.5 38.0 11.0 38.0 14-15 31.68861477979192 37.0 29.0 38.0 11.5 38.0 16-17 31.39568830655245 36.5 28.0 38.0 11.0 38.0 18-19 31.96257654797006 37.0 29.0 38.0 11.5 38.0 20-21 30.865868764938853 36.0 27.0 38.0 11.0 38.0 22-23 30.844746468470667 35.5 26.5 38.0 11.0 38.0 24-25 32.02522520950736 37.0 29.0 38.0 11.0 38.0 26-27 30.605867369192385 36.5 25.0 38.0 11.0 38.0 28-29 32.656849916545994 37.0 32.0 38.0 11.0 38.0 30-31 33.11649248913935 38.0 34.0 38.0 11.0 38.0 32-33 33.186268181051574 38.0 34.0 38.0 11.0 38.0 34-35 33.25354316055155 38.0 34.0 38.0 11.0 38.0 36-37 31.211746369605294 36.5 27.5 38.0 11.0 38.0 38-39 29.570005408517545 34.5 23.0 38.0 11.0 38.0 40-41 30.710685020732647 35.0 26.0 38.0 11.0 38.0 42-43 31.73542171897808 36.5 29.0 38.0 11.0 38.0 44-45 33.26370884728789 37.5 34.0 38.0 11.0 38.0 46-47 31.86484230972777 37.0 29.0 38.0 11.0 38.0 48-49 31.322708213386374 36.5 27.5 38.0 11.0 38.0 50-51 29.235613634116696 34.5 22.5 38.0 11.0 38.0 52-53 32.48226238870376 37.0 32.5 38.0 11.0 38.0 54-55 31.588903234060865 36.5 28.5 38.0 11.0 38.0 56-57 31.97297195131171 37.0 29.5 38.0 11.0 38.0 58-59 33.017275270280486 37.5 34.0 38.0 11.0 38.0 60-61 33.44817709696367 38.0 34.0 38.0 11.0 38.0 62-63 33.35382463608819 38.0 34.0 38.0 11.0 38.0 64-65 33.07344534198697 38.0 33.0 38.0 11.0 38.0 66-67 31.107542264947572 37.0 26.5 38.0 11.0 38.0 68-69 31.211379986158846 37.0 26.0 38.0 11.0 38.0 70-71 30.777009147954942 36.5 25.5 38.0 11.0 38.0 72-73 29.609586451954335 34.5 23.5 38.0 11.0 38.0 74-75 31.6935086158266 36.5 28.5 38.0 11.0 38.0 76 32.18476193799396 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 2.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 4.0 12 44.0 13 330.0 14 810.0 15 1453.0 16 2260.0 17 3528.0 18 4399.0 19 4593.0 20 3988.0 21 3322.0 22 2643.0 23 2158.0 24 2102.0 25 2212.0 26 2470.0 27 2861.0 28 3411.0 29 4129.0 30 5223.0 31 7037.0 32 9096.0 33 12662.0 34 17978.0 35 25083.0 36 30252.0 37 17901.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.77297020662863 19.481712813534088 12.85831428720973 29.88700269262755 2 20.407557967095276 17.00717064745189 39.777611063616966 22.807660321835872 3 19.928933242609816 19.36074812010398 35.853818820477926 24.856499816808277 4 14.109252054364324 19.346790655477434 34.221958581223724 32.32199870893452 5 14.421550325383395 30.507528307482946 38.76220551203541 16.308715855098256 6 26.76692778756739 34.30163244180028 16.990886938720916 21.94055283191142 7 25.952160789992497 26.290629307186347 21.67826880913749 26.078941093683667 8 22.441537897865064 33.23950706314081 18.281001924989386 26.037953114004736 9 23.076028357245463 16.07278902465266 20.319397030514864 40.53178558758702 10-11 24.995856317443884 24.37561246536027 26.798140140797972 23.830391076397873 12-13 24.372123048470907 20.131609173677 28.516677958807435 26.97958981904466 14-15 23.521509284729774 22.9989706250109 23.372627930374705 30.10689215988462 16-17 24.836213589692143 23.12841494302007 25.85717068972035 26.17820077756744 18-19 22.286518520241703 22.848901114878423 27.715807777978096 27.148772586901774 20-21 24.222880040011862 22.813450499857517 27.05133498886298 25.912334471267645 22-23 24.94983977807373 21.596810682237173 27.521823331336613 25.93152620835248 24-25 22.85299710960808 24.638119442392803 24.14960249841523 28.359280949583887 26-27 23.380769879440997 23.884989153760706 27.08651984018517 25.64772112661312 28-29 23.408685133382573 24.654403340525388 26.068485423003334 25.868426103088705 30-31 23.228601753442184 24.376335800171564 26.186190552348826 26.208871894037422 32-33 22.956225392412865 24.56629582027229 25.866972183612585 26.610506603702262 34-35 23.260094562922724 24.235092963611304 26.201955230911487 26.302857242554477 36-37 24.127212138482925 21.9684325003344 29.895492268056227 24.00886309312645 38-39 23.865424039314327 21.13115922011079 32.822809287718634 22.18060745285625 40-41 23.572533556656662 23.317223811850095 25.48822899946496 27.622013632028285 42-43 21.226061215825624 23.73378152824384 27.006263485103144 28.033893770827394 44-45 21.0609572052097 22.916454636126517 28.858059244483087 27.164528914180696 46-47 23.45201193377106 22.024263008217552 28.961785180489564 25.561939877521823 48-49 23.382068997603927 22.386709935561914 29.718868495126433 24.512352571707726 50-51 24.8695834229917 21.11585411953544 31.018499671414197 22.99606278605866 52-53 20.552605714485107 23.65672379600928 28.95742342206119 26.833247067444415 54-55 22.409551669390343 23.07021267934097 28.365968979174056 26.154266672094632 56-57 22.390069148410284 23.152795305584796 27.61516496170376 26.841970584301162 58-59 20.627517120051177 24.356271536370112 28.00971226682563 27.006499076753077 60-61 20.636822285872142 23.49874234868201 27.952427339740325 27.91200802570552 62-63 20.513879276753883 24.267361454401648 27.652997726043488 27.56576154280098 64-65 20.687238657974167 24.926577066455753 26.987653315808757 27.398530959761324 66-67 20.037453183520597 25.0116314234536 23.684195221811244 31.26672017121455 68-69 20.002501221526792 25.657879429488823 24.15569231485144 30.18392703413295 70-71 20.4556028566776 25.57081210598553 23.40271477423407 30.5708702631028 72-73 20.002151800824663 25.20602038976673 22.673874230149636 32.117953579258966 74-75 21.182505226855717 26.040355106325443 25.3349113251933 27.442228341625547 76 21.688989177023423 25.40288108683389 25.790786803063696 27.11734293307899 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.5 2 0.5 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 1.0 15 1.5 16 5.0 17 8.0 18 6.5 19 7.0 20 17.0 21 25.0 22 35.5 23 75.0 24 133.5 25 163.0 26 234.5 27 386.0 28 567.0 29 668.0 30 802.0 31 1113.5 32 1589.5 33 1888.0 34 2212.5 35 2952.5 36 3894.5 37 4421.0 38 5011.0 39 6239.0 40 7586.0 41 8788.5 42 9282.0 43 9608.5 44 10225.0 45 10622.5 46 10730.0 47 10706.5 48 10309.0 49 9487.5 50 9040.0 51 8465.5 52 7393.0 53 6473.5 54 6052.0 55 5625.0 56 4805.5 57 4111.0 58 3809.0 59 3576.0 60 3177.5 61 2842.5 62 2673.0 63 2523.0 64 2319.0 65 2182.0 66 2104.0 67 2109.0 68 2039.0 69 1898.0 70 1725.0 71 1623.0 72 1578.5 73 1468.5 74 1266.5 75 1130.0 76 1044.5 77 848.5 78 634.5 79 531.0 80 464.0 81 316.0 82 188.0 83 141.0 84 112.0 85 62.5 86 40.0 87 38.0 88 25.5 89 10.5 90 5.0 91 2.0 92 2.0 93 1.0 94 1.0 95 1.0 96 0.0 97 0.5 98 0.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.001163122052212549 9 0.001163122052212549 10-11 0.001453902565265686 12-13 0.001453902565265686 14-15 0.001163122052212549 16-17 0.002617024617478235 18-19 0.002326244104425098 20-21 0.001163122052212549 22-23 0.001163122052212549 24-25 0.001163122052212549 26-27 0.001163122052212549 28-29 0.001163122052212549 30-31 0.0020354635913719605 32-33 0.001163122052212549 34-35 0.001163122052212549 36-37 0.001163122052212549 38-39 0.0020354635913719605 40-41 0.0017446830783188233 42-43 0.001163122052212549 44-45 0.001453902565265686 46-47 0.001163122052212549 48-49 0.0017446830783188233 50-51 0.001163122052212549 52-53 0.001163122052212549 54-55 0.001163122052212549 56-57 0.001163122052212549 58-59 0.0020354635913719605 60-61 0.0020354635913719605 62-63 0.002326244104425098 64-65 0.001163122052212549 66-67 0.0017446830783188233 68-69 0.020354635913719606 70-71 0.0017446830783188233 72-73 0.001163122052212549 74-75 0.001453902565265686 76 0.001163122052212549 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 171951.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 88.2446841570877 #Duplication Level Percentage of deduplicated Percentage of total 1 92.71726550772357 81.81805810637908 2 4.770918537092221 8.420163988897961 3 1.2301033992236385 3.2565025783514985 4 0.5266893675995918 1.8591014757088895 5 0.2661863415312136 1.1744764817676312 6 0.17816559707642785 0.9433300105000996 7 0.10429410723093281 0.6442380386427372 8 0.06351879382492784 0.44841567192959436 9 0.0575460447464163 0.45703192888234295 >10 0.08531230395104748 0.9786817189401781 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002326244104425098 0.0 2 0.0 0.0 0.0 0.0029078051305313725 0.0 3 0.0 0.0 0.0 0.0029078051305313725 0.0 4 0.0 0.0 0.0 0.00523404923495647 0.0 5 0.0 0.0 0.0 0.006397171287169019 0.0 6 0.0 0.0 0.0 0.007560293339381568 0.0 7 0.0 0.0 0.0 0.007560293339381568 0.0 8 0.0 0.0 0.0 0.007560293339381568 0.0 9 0.0 0.0 0.0 0.01046809846991294 0.0 10 0.0 0.0 0.0 0.012794342574338037 0.0 11 0.0 0.0 0.0 0.012794342574338037 0.0 12 0.0 0.0 0.0 0.012794342574338037 0.0 13 0.0 0.0 0.0 0.013957464626550587 0.0 14 0.0 0.0 0.0 0.014539025652656861 0.0 15 0.0 0.0 0.0 0.01570214770486941 0.0 16 0.0 0.0 0.0 0.01570214770486941 0.0 17 0.0 0.0 0.0 0.01570214770486941 0.0 18 0.0 0.0 0.0 0.01570214770486941 0.0 19 0.0 0.0 0.0 0.01570214770486941 0.0 20 0.0 0.0 0.0 0.01570214770486941 0.0 21 0.0 0.0 0.0 0.016283708730975684 0.0 22 0.0 0.0 0.0 0.020354635913719606 0.0 23 0.0 0.0 0.0 0.02093619693982588 0.0 24 0.0 0.0 0.0 0.027914929253101173 0.0 25 0.0 0.0 0.0 0.030241173357526272 0.0 26 0.0 0.0 0.0 0.033148978488057645 0.0 27 0.0 0.0 0.0 0.061645468767265094 0.0 28 0.0 0.0 0.0 0.09188664212479136 0.0 29 0.0 0.0 0.0 0.12038313240399881 0.0 30 0.0 0.0 0.0 0.16981581962303213 0.0 31 0.0 0.0 0.0 0.18784421143232666 0.0 32 0.0 0.0 0.0 0.22215631197259683 0.0 33 0.0 0.0 0.0 0.25472372943454824 0.0 34 0.0 0.0 0.0 0.31055358794075055 0.0 35 0.0 0.0 0.0 0.44547574599740625 0.0 36 0.0 0.0 0.0 0.5513198527487482 0.0 37 0.0 0.0 0.0 0.8269797791231223 0.0 38 0.0 0.0 0.0 1.108455315758559 0.0 39 0.0 0.0 0.0 1.4533210042395799 0.0 40 0.0 0.0 0.0 1.8400590866002524 0.0 41 0.0 0.0 0.0 2.2814639054149146 0.0 42 0.0 0.0 0.0 2.7472942873260404 0.0 43 0.0 0.0 0.0 3.2113799861588475 0.0 44 0.0 0.0 0.0 3.6923309547487366 0.0 45 0.0 0.0 0.0 4.051154107856308 0.0 46 0.0 0.0 0.0 4.475112095887782 0.0 47 0.0 0.0 0.0 5.023524143505999 0.0 48 0.0 0.0 0.0 5.3887444679007395 0.0 49 0.0 0.0 0.0 5.7051136661025525 0.0 50 0.0 0.0 0.0 6.165709998778722 0.0 51 0.0 0.0 0.0 6.704235508953132 0.0 52 0.0 0.0 0.0 7.157853109316026 0.0 53 0.0 0.0 0.0 7.706265156934243 0.0 54 0.0 0.0 0.0 8.20001046809847 0.0 55 0.0 0.0 0.0 8.556507377101616 0.0 56 0.0 0.0 0.0 8.926961750731312 0.0 57 0.0 0.0 0.0 9.275316805368972 0.0 58 0.0 0.0 0.0 9.576565416892022 0.0 59 0.0 0.0 0.0 9.93422544794738 0.0 60 0.0 0.0 0.0 10.16219737018104 0.0 61 0.0 0.0 0.0 10.404708318067357 0.0 62 0.0 0.0 0.0 10.570453210507644 0.0 63 0.0 0.0 0.0 10.817616646602811 0.0 64 0.0 0.0 0.0 11.069432570906828 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACCC 20 0.0069428342 52.498478 46 GCGCCAA 20 0.0069428342 52.498478 55 AAGGATC 20 0.0069428342 52.498478 15 TACCGAC 20 0.0069428342 52.498478 19 TAGATCT 150 0.0 51.33184 39 ACGTATG 35 2.0803645E-5 49.998547 70 GTAGATC 140 0.0 47.49862 38 CACGTGT 30 5.8662286E-4 46.66531 33 ACGCTTC 70 3.8016879E-10 44.99869 15 GACGCTT 40 4.579228E-5 43.74873 14 ATCTCGG 105 0.0 43.332073 42 GCCGACT 95 3.6379788E-12 40.525135 20 TCTCGTT 35 0.0012529726 39.998837 43 CGGTGTT 35 0.0012529726 39.998837 46 TGTCGAC 35 0.0012529726 39.998837 19 TAGATCC 45 9.1708614E-5 38.88776 39 GATCTCG 135 0.0 38.88776 41 GTGGTCG 145 0.0 38.619568 48 GTAGCTC 55 6.667382E-6 38.180706 38 GTGTATA 65 4.8391485E-7 37.69121 36 >>END_MODULE