##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779718_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 171951 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.55692610104041 34.0 34.0 34.0 34.0 34.0 2 33.605649283807594 34.0 34.0 34.0 34.0 34.0 3 33.61961256404441 34.0 34.0 34.0 34.0 34.0 4 33.6529360108403 34.0 34.0 34.0 34.0 34.0 5 33.65131345557746 34.0 34.0 34.0 34.0 34.0 6 37.25631720664608 38.0 38.0 38.0 36.0 38.0 7 37.22550610348297 38.0 38.0 38.0 36.0 38.0 8 37.07779541846224 38.0 38.0 38.0 36.0 38.0 9 37.11026397054975 38.0 38.0 38.0 36.0 38.0 10-11 37.01893562701002 38.0 37.5 38.0 35.0 38.0 12-13 36.98293118388378 38.0 37.0 38.0 35.0 38.0 14-15 37.01376845729307 38.0 37.5 38.0 35.0 38.0 16-17 36.95773505242772 38.0 37.0 38.0 35.0 38.0 18-19 36.957421009473634 38.0 37.0 38.0 35.0 38.0 20-21 36.998328012049946 38.0 37.5 38.0 35.0 38.0 22-23 36.919218265668704 38.0 37.0 38.0 35.0 38.0 24-25 36.90888683403993 38.0 37.0 38.0 35.0 38.0 26-27 36.80723869009194 38.0 37.0 38.0 34.5 38.0 28-29 36.75758500968299 38.0 37.0 38.0 34.5 38.0 30-31 36.70869317421824 38.0 37.0 38.0 34.0 38.0 32-33 36.61533227489227 38.0 37.0 38.0 34.0 38.0 34-35 36.534972172304904 38.0 37.0 38.0 34.0 38.0 36-37 36.56135178044908 38.0 37.0 38.0 34.0 38.0 38-39 36.35881152188705 38.0 37.0 38.0 34.0 38.0 40-41 36.616853056975536 38.0 37.0 38.0 34.0 38.0 42-43 36.742886054748155 38.0 37.0 38.0 34.0 38.0 44-45 36.728030078336275 38.0 37.0 38.0 34.0 38.0 46-47 36.7506615256672 38.0 37.0 38.0 34.0 38.0 48-49 36.73354618466889 38.0 37.0 38.0 34.0 38.0 50-51 36.661793185267896 38.0 37.0 38.0 34.0 38.0 52-53 36.65364551529215 38.0 37.0 38.0 34.0 38.0 54-55 36.63056917377625 38.0 37.0 38.0 34.0 38.0 56-57 36.64576827119354 38.0 37.0 38.0 34.0 38.0 58-59 36.5789818029555 38.0 37.0 38.0 34.0 38.0 60-61 36.63854237544417 38.0 37.0 38.0 34.0 38.0 62-63 36.65673360434077 38.0 37.0 38.0 34.0 38.0 64-65 36.68831236805835 38.0 37.0 38.0 34.0 38.0 66-67 36.62903676047246 38.0 37.0 38.0 34.0 38.0 68-69 36.46464981302813 38.0 37.0 38.0 34.0 38.0 70-71 35.505216602404175 38.0 36.5 38.0 29.0 38.0 72-73 34.00490546725521 38.0 36.0 38.0 21.5 38.0 74-75 33.83454588807277 38.0 36.0 38.0 19.0 38.0 76 33.39827043750836 38.0 34.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 1.0 20 2.0 21 4.0 22 10.0 23 34.0 24 64.0 25 117.0 26 196.0 27 456.0 28 663.0 29 1141.0 30 1922.0 31 3017.0 32 4421.0 33 6964.0 34 11393.0 35 20947.0 36 28083.0 37 92515.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.90441462974917 17.468348541154167 11.369518060377667 35.257718768718995 2 18.225540997144535 17.13336939011695 41.33444993050346 23.306639682235055 3 17.482306005780718 20.21855063361074 37.00182028601171 25.297323074596832 4 13.105477723304896 25.695110816453525 33.795092788061716 27.404318672179866 5 13.021732935545591 31.589813377066722 41.61999639432164 13.768457293066048 6 26.20572139737483 42.85348733069305 16.545992753749612 14.394798518182505 7 24.751237271083042 26.828573256334654 20.43198353019174 27.988205942390564 8 21.941715953963627 41.61825171124332 16.930986153031967 19.509046181761082 9 21.726538374304308 15.624800088397276 18.083640106774602 44.565021430523814 10-11 23.338043977644794 27.510744339957316 27.652936010840296 21.498275671557597 12-13 22.664596309413728 19.321201970328755 28.257468697477773 29.75673302277975 14-15 21.648318416293012 19.723351419881247 20.308983373170264 38.31934679065548 16-17 28.187099813318913 27.442992480415935 20.07897598734523 24.290931718919925 18-19 28.213851620519797 22.88529871882106 21.049892120429657 27.85095754022948 20-21 21.55352396903769 21.906240731371145 20.942012550086943 35.598222749504224 22-23 22.205744659815878 27.69190059958942 20.962367186000662 29.139987554594043 24-25 27.92307110746666 28.28654674878308 20.863501811562596 22.926880332187658 26-27 27.611645177986755 29.06467540171328 21.733517106617583 21.590162313682388 28-29 21.46076498537374 22.47268117079866 28.624724485463883 27.441829358363716 30-31 21.259254089827916 20.792842146890685 35.87591813946997 22.071985623811436 32-33 26.30662223540427 21.88239672930079 23.916406418107485 27.894574617187455 34-35 22.60731254834226 21.61894958447465 28.34295816831539 27.430779698867703 36-37 21.266814383167297 33.15770190344924 22.584050107298008 22.991433606085454 38-39 20.76114707096789 23.56281731423487 28.532547062826037 27.143488551971203 40-41 20.738756971462802 20.608487301614993 29.75673302277975 28.89602270414246 42-43 26.75326110345389 20.778012340724974 29.49415821949276 22.97456833632837 44-45 20.689324284243767 27.12022611092695 30.18999598722892 22.000453617600364 46-47 26.481381323749208 21.259544870340967 24.55001715605027 27.709056649859555 48-49 25.961174985897145 20.666061843199515 23.670406104064533 29.702357066838807 50-51 20.502061633837545 21.104268076370595 29.81750615000785 28.576164139784012 52-53 18.988258282882914 20.830062052561484 36.56913888258864 23.612540781966956 54-55 18.74109484678775 21.014998458863282 31.601444597588845 28.642462096760124 56-57 24.927450261993243 21.14090642101529 25.0164290989875 28.915214218003964 58-59 19.577088821815515 21.44884298433856 35.01724328442405 23.95682490942187 60-61 25.074003640572023 27.79978016993213 24.584620037103594 22.541596152392252 62-63 18.57360527126914 35.78955632709319 22.381376089699973 23.255462311937702 64-65 18.5099243389105 37.09108990351903 21.360445708370406 23.038540049200062 66-67 18.505271850701654 36.89975632593006 21.13334612767591 23.46162569569238 68-69 18.40117242702863 37.23124611081064 21.17085681385976 23.19672464830097 70-71 18.71696006420434 35.58804543154736 21.739332716878646 23.95566178736966 72-73 19.072003070642218 31.45808980465365 23.10600112822839 26.36390599647574 74-75 19.203435862542236 29.897180010584414 24.012945548441124 26.886438578432227 76 19.27991113747521 29.50898802565847 24.220272054248014 26.990828782618305 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.5 15 2.5 16 5.5 17 11.0 18 14.0 19 18.0 20 24.5 21 30.0 22 42.0 23 72.5 24 145.5 25 200.0 26 263.5 27 380.5 28 517.5 29 601.0 30 784.0 31 1045.0 32 1471.5 33 1820.0 34 2217.5 35 2890.0 36 3437.0 37 3709.0 38 4458.0 39 9229.0 40 14358.0 41 14788.5 42 14112.0 43 12930.0 44 11167.0 45 9977.0 46 9368.0 47 9236.0 48 8599.5 49 7578.0 50 7061.0 51 6680.0 52 5562.5 53 4612.5 54 4399.0 55 4148.5 56 3565.5 57 2874.5 58 2516.0 59 2348.0 60 2129.5 61 2017.0 62 1955.0 63 1892.5 64 1812.5 65 1792.5 66 1804.5 67 1819.0 68 1813.5 69 1706.0 70 1648.5 71 1693.0 72 1678.5 73 1562.0 74 1392.0 75 1324.0 76 1274.0 77 1078.5 78 839.5 79 746.0 80 659.0 81 507.5 82 360.0 83 277.0 84 222.5 85 144.0 86 85.5 87 51.0 88 40.5 89 21.0 90 11.5 91 6.0 92 1.0 93 2.5 94 2.5 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 171951.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.253671103977297 #Duplication Level Percentage of deduplicated Percentage of total 1 49.723674661803834 15.540473739611866 2 21.49383152527865 13.435222825107152 3 10.848328092145662 10.171502346598741 4 5.612102491579986 7.0159522189460946 5 2.984685807856199 4.664119429372321 6 1.8496120280605124 3.468429959697821 7 1.3900001860776687 3.040982605509709 8 0.9917939748050837 2.479776215317154 9 0.749893005340429 2.1093218416874575 >10 4.25745706257792 22.301702229123414 >50 0.07257029083939637 1.3643421672453198 >100 0.014886213505517203 0.875249344289943 >500 0.005582330064568952 1.2079022512227322 >1k 0.003721553376379301 2.0133642723799223 >5k 0.0 0.0 >10k+ 0.0018607766881896504 10.311658553890354 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 17731 10.311658553890354 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 2096 1.2189519107187514 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 1366 0.7944123616611709 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 949 0.5519014137748545 RNA PCR Primer, Index 48 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 611 0.3553337869509337 No Hit CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 517 0.3006670504969439 No Hit CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 350 0.20354635913719604 RNA PCR Primer, Index 48 (95% over 21bp) CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 198 0.11514908316904233 No Hit TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 174 0.10119161854249174 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0029078051305313725 0.0 2 0.0 0.0 0.0 0.0034893661566376467 0.0 3 0.0 0.0 0.0 0.0034893661566376467 0.0 4 0.0 0.0 0.0 0.005815610261062745 0.0 5 0.0 0.0 0.0 0.006978732313275293 0.0 6 0.0 0.0 0.0 0.008141854365487842 0.0 7 0.0 0.0 0.0 0.008141854365487842 0.0 8 0.0 0.0 0.0 0.008141854365487842 0.0 9 0.0 0.0 0.0 0.012212781548231764 0.0 10 0.0 0.0 0.0 0.018028391809294508 0.0 11 0.0 0.0 0.0 0.018028391809294508 0.0 12 0.0 0.0 0.0 0.01977307488761333 0.0 13 0.0 0.0 0.0 0.022680880018144705 0.0 14 0.0 0.0 0.0 0.02326244104425098 0.0 15 0.0 0.0 0.0 0.026751807200888624 0.0 16 0.0 0.0 0.0 0.027914929253101173 0.0 17 0.0 0.0 0.0 0.027914929253101173 0.0 18 0.0 0.0 0.0 0.028496490279207448 0.0 19 0.0 0.0 0.0 0.029659612331419997 0.0 20 0.0 0.0 0.0 0.029659612331419997 0.0 21 0.0 0.0 0.0 0.03663834464469529 0.0 22 0.0 0.0 0.0 0.03780146669690784 0.0 23 0.0 0.0 0.0 0.040127710801332934 0.0 24 0.0 0.0 0.0 0.04536176003628941 0.0 25 0.0 0.0 0.0 0.0500142482451396 0.0 26 0.0 0.0 0.0 0.05292205337567098 0.0 27 0.0 0.0 0.0 0.08839727596815372 0.0 28 0.0 0.0 0.0 0.12329093753453019 0.0 29 0.0 0.0 0.0 0.1773761129624137 0.0 30 0.0 0.0 0.0 0.2413478258341039 0.0 31 0.0 0.0 0.0 0.2867095858703933 0.0 32 0.0 0.0 0.0 0.33148978488057645 0.0 33 0.0 0.0 0.0 0.40651115724828585 0.0 34 0.0 0.0 0.0 0.5519014137748545 0.0 35 0.0 0.0 0.0 0.750213723677094 0.0 36 0.0 0.0 0.0 1.0380864315996998 0.0 37 0.0 0.0 0.0 1.4399451006391355 0.0 38 0.0 0.0 0.0 1.9057754825502613 0.0 39 0.0 0.0 0.0 2.403010159871126 0.0 40 0.0 0.0 0.0 2.9333938156800485 0.0 41 0.0 0.0 0.0 3.498089572029241 0.0 42 0.0 0.0 0.0 4.138969822798355 0.0 43 0.0 0.0 0.0 4.754261388418794 0.0 44 0.0 0.0 0.0 5.384091979691889 0.0 45 0.0 0.0 0.0 6.088362382306587 0.0 46 0.0 0.0 0.0 6.755412879250484 0.0 47 0.0 0.0 0.0 7.482945722909434 0.0 48 0.0 0.0 0.0 8.137783438305098 0.0 49 0.0 0.0 0.0 8.74784095469058 0.0 50 0.0 0.0 0.0 9.30381329564818 0.0 51 0.0 0.0 0.0 9.90921832382481 0.0 52 0.0 0.0 0.0 10.529743938680205 0.0 53 0.0 0.0 0.0 11.117120575047542 0.0 54 0.0 0.0 0.0 11.650993597013102 0.0 55 0.0 0.0 0.0 12.234299306197697 0.0 56 0.0 0.0 0.0 12.784456036894232 0.0 57 0.0 0.0 0.0 13.346825549138998 0.0 58 0.0 0.0 0.0 13.87895388802624 0.0 59 0.0 0.0 0.0 14.36746514995551 0.0 60 0.0 0.0 0.0 14.865862949328587 0.0 61 0.0 0.0 0.0 15.379381335380428 0.0 62 0.0 0.0 0.0 15.853353571657042 0.0 63 0.0 0.0 0.0 16.36047478642171 0.0 64 0.0 0.0 0.0 16.875737855551872 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGACA 20 0.006942038 52.5 23 GGTTACA 20 0.006942038 52.5 1 AGTCGCG 20 0.006942038 52.5 12 CTTTATA 110 0.0 50.909096 2 TATGCCG 2695 0.0 47.532467 43 ATCTCGT 2685 0.0 47.448788 37 CCGTCTT 2685 0.0 47.448788 47 CTCGTAT 2725 0.0 47.394497 39 TCTCGTA 2690 0.0 47.360596 38 GCCGTCT 2695 0.0 47.272728 46 ATGCCGT 2705 0.0 47.227356 44 TCGTATG 2745 0.0 47.176685 40 AATCTCG 2645 0.0 47.10775 36 CGTATGC 2735 0.0 47.093235 41 CGTCTTC 2715 0.0 47.05341 48 TCTTCTG 2735 0.0 46.965263 50 TGCCGTC 2715 0.0 46.924496 45 GTATGCC 2730 0.0 46.92308 42 GTCTTCT 2745 0.0 46.79417 49 CTTGAAA 2720 0.0 46.709557 57 >>END_MODULE