##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779717_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 150586 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.007198544353393 34.0 23.0 34.0 12.0 34.0 2 27.579137502822306 34.0 23.0 34.0 12.0 34.0 3 26.63752274447824 32.0 21.0 34.0 11.0 34.0 4 28.795459073220616 33.0 23.0 34.0 12.0 34.0 5 28.403364190562204 34.0 23.0 34.0 11.0 34.0 6 30.728460813090194 36.0 26.0 38.0 11.0 38.0 7 31.667127090167746 37.0 27.0 38.0 12.0 38.0 8 30.904247406797445 37.0 26.0 38.0 11.0 38.0 9 32.361248721660715 37.0 31.0 38.0 12.0 38.0 10-11 31.99261219502477 37.0 31.0 38.0 11.0 38.0 12-13 31.116342156641387 36.0 27.0 38.0 11.0 38.0 14-15 31.04830794363354 36.5 26.5 38.0 11.0 38.0 16-17 30.76865711287902 35.5 27.0 38.0 11.0 38.0 18-19 31.34009137635637 37.0 27.0 38.0 11.5 38.0 20-21 30.247838444476912 35.5 24.5 38.0 11.0 38.0 22-23 30.24105826570863 35.5 26.0 38.0 11.0 38.0 24-25 31.351533343073058 36.5 28.5 38.0 11.0 38.0 26-27 29.990610016867436 35.0 24.0 38.0 11.0 38.0 28-29 31.951223885354548 37.0 29.5 38.0 11.0 38.0 30-31 32.43223473629687 37.0 31.0 38.0 11.0 38.0 32-33 32.49072622952997 38.0 31.0 38.0 11.0 38.0 34-35 32.551771080976984 38.0 31.5 38.0 11.0 38.0 36-37 30.63476020347177 36.0 25.0 38.0 11.0 38.0 38-39 29.004084044997544 34.0 22.5 37.5 11.0 38.0 40-41 30.057770974725408 35.0 24.5 37.5 11.0 38.0 42-43 31.048912249478704 36.5 27.0 38.0 11.0 38.0 44-45 32.61181318316444 37.0 32.0 38.0 11.0 38.0 46-47 31.23703398722325 36.5 28.5 38.0 11.0 38.0 48-49 30.704179007344642 36.0 25.0 38.0 11.0 38.0 50-51 28.612268072729204 34.0 21.5 37.5 11.0 38.0 52-53 31.76452990317825 36.5 29.0 38.0 11.0 38.0 54-55 30.870217018846375 36.5 27.0 38.0 11.0 38.0 56-57 31.297072769048917 36.5 27.0 38.0 11.0 38.0 58-59 32.32192899738355 37.0 31.0 38.0 11.0 38.0 60-61 32.78393077709747 38.0 34.0 38.0 11.0 38.0 62-63 32.67230353419309 38.0 33.0 38.0 11.0 38.0 64-65 32.38142323987621 37.5 31.0 38.0 11.0 38.0 66-67 30.456739006282124 36.5 24.5 38.0 11.0 38.0 68-69 30.536623590506423 36.5 25.0 38.0 11.0 38.0 70-71 30.133677765529335 35.5 24.0 38.0 11.0 38.0 72-73 28.97288592565046 34.0 22.5 37.5 11.0 38.0 74-75 30.93102612460654 36.0 26.0 38.0 11.0 38.0 76 31.359754558856732 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 5.0 4 1.0 5 2.0 6 0.0 7 0.0 8 0.0 9 1.0 10 0.0 11 9.0 12 61.0 13 295.0 14 820.0 15 1413.0 16 2306.0 17 3484.0 18 4483.0 19 4855.0 20 4379.0 21 3246.0 22 2716.0 23 2258.0 24 2074.0 25 2256.0 26 2447.0 27 2797.0 28 3425.0 29 4008.0 30 5039.0 31 6325.0 32 8058.0 33 11203.0 34 15093.0 35 20400.0 36 23776.0 37 13351.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.929249731050696 19.285989401405175 11.24008872006694 30.544672147477186 2 20.579602353472435 17.02083859057283 38.42189845005512 23.97766060589962 3 20.77298535710728 17.042866155327555 36.44918152538433 25.734966962180827 4 14.073395226521098 19.502330955891143 33.02585966450173 33.39841415308602 5 14.561114579044531 28.638120409599832 39.11054148460016 17.690223526755474 6 27.53708844115655 32.57075690967287 16.88005525082013 23.012099398350443 7 26.971962865073777 25.174983066154887 20.82796541511163 27.0250886536597 8 23.484018355813227 31.194920938510684 18.066264220110373 27.25479648556572 9 22.65189701087137 16.05868016124426 19.679370961422244 41.61005186646212 10-11 24.11373658484752 23.211866432897672 27.268953883753056 25.405443098501753 12-13 23.967630963765806 19.344384231218786 29.171979598342368 27.516005206673043 14-15 23.555897939938106 22.54280173730558 23.626957457264673 30.274342865491636 16-17 25.058608666777353 22.587082849078534 26.07205711439482 26.282251369749293 18-19 21.72597799774864 22.540851599363773 28.419630019491883 27.313540383395708 20-21 24.35639882187696 22.4557290715474 27.276138359725987 25.911733746849652 22-23 25.0683207539025 21.526599436167 27.494994238808847 25.910085571121655 24-25 22.09773769479301 24.981653843727276 24.18670908143037 28.733899380049344 26-27 23.501695129118698 23.759368037269596 27.139000587733307 25.599936245878396 28-29 22.972479379457823 24.606848277968894 26.19705401851532 26.223618324057963 30-31 22.432932316346285 24.35223525739579 26.675986465261616 26.53884596099631 32-33 22.85585259515801 24.196681465149407 26.343402278545742 26.604063661146842 34-35 23.01196737859951 24.15989267878015 26.27477154393795 26.55336839868239 36-37 24.271715705970053 21.55150372070011 30.326113304532914 23.850667268796926 38-39 23.9761848628438 20.656609763143653 33.27411647899905 22.093088895013498 40-41 23.352891757900572 23.313708496458563 25.85464338251165 27.478756363129214 42-43 20.487456625325827 23.720011289867344 27.50610150918962 28.286430575617207 44-45 20.72674264158963 22.07755552013601 29.894870364467113 27.300831473807246 46-47 23.259196291598318 21.222364637361615 29.62736672931457 25.891072341725497 48-49 23.08808537909554 21.703730022480418 30.62583222370173 24.582352374722316 50-51 25.443122879020315 20.322886989553655 31.38219804886472 22.851792082561314 52-53 19.417437041759644 23.514703538412498 29.734154181277226 27.333705238550632 54-55 21.697752954497908 22.541183658696134 28.805815023028313 26.95524836377764 56-57 21.978974352163 22.724767230272683 28.07813890475368 27.218119512810635 58-59 19.579214414031497 23.954096117894345 28.821421811649305 27.64526765642485 60-61 19.409660998376218 23.10318148159217 28.74756349846754 28.739594021564074 62-63 19.779245489774162 24.023988125479416 28.214604730548665 27.982161654197757 64-65 20.106522865225994 24.306671625337035 27.313086905125584 28.273718604311387 66-67 18.794683030659243 25.336959445324407 23.757342710751157 32.11101481326519 68-69 19.54442185818486 25.27601737813384 23.731847954614903 31.44771280906639 70-71 19.751352320612057 25.662711813753326 23.35820474250288 31.22773112313174 72-73 19.44818929849844 25.718071152964928 22.473551737649174 32.36018781088745 74-75 21.19665555393218 26.06954535191064 24.77951626399607 27.954282830161116 76 21.59241844649878 25.262990117947083 25.585086600786315 27.55950483476782 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.5 2 1.5 3 1.5 4 1.0 5 1.0 6 1.0 7 0.5 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 1.0 14 1.5 15 3.0 16 5.5 17 7.0 18 11.0 19 13.0 20 25.5 21 40.0 22 46.0 23 74.5 24 140.5 25 184.0 26 222.0 27 343.0 28 513.5 29 601.0 30 724.5 31 1041.0 32 1474.0 33 1714.0 34 2010.5 35 2649.5 36 3408.0 37 3824.0 38 4293.0 39 5253.5 40 6268.0 41 7175.5 42 7560.0 43 7884.5 44 8658.5 45 9067.5 46 9027.0 47 9036.5 48 8917.5 49 8371.5 50 7954.0 51 7595.0 52 6870.0 53 6064.5 54 5625.0 55 5209.5 56 4407.5 57 3746.5 58 3472.0 59 3277.0 60 2916.0 61 2579.0 62 2408.0 63 2358.5 64 2219.0 65 2016.5 66 1872.5 67 1841.0 68 1749.0 69 1580.5 70 1489.5 71 1475.0 72 1405.5 73 1236.0 74 1057.0 75 978.0 76 880.0 77 708.5 78 557.0 79 479.0 80 409.0 81 283.5 82 179.0 83 130.0 84 110.0 85 71.5 86 41.0 87 29.0 88 21.5 89 11.5 90 8.0 91 5.5 92 4.0 93 3.0 94 1.5 95 0.5 96 0.0 97 0.0 98 0.5 99 2.5 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.64072357324054E-4 4 0.002656289429296216 5 0.0 6 0.0 7 0.0 8 0.004648506501268378 9 0.004648506501268378 10-11 0.00664072357324054 12-13 0.00664072357324054 14-15 0.005312578858592432 16-17 0.007304795930564594 18-19 0.006972759751902567 20-21 0.004980542679930405 22-23 0.006308687394578513 24-25 0.006308687394578513 26-27 0.004980542679930405 28-29 0.005312578858592432 30-31 0.006972759751902567 32-33 0.004980542679930405 34-35 0.00664072357324054 36-37 0.006308687394578513 38-39 0.006308687394578513 40-41 0.007636832109226622 42-43 0.0056446150372544595 44-45 0.00664072357324054 46-47 0.0059766512159164864 48-49 0.006972759751902567 50-51 0.004648506501268378 52-53 0.00664072357324054 54-55 0.006972759751902567 56-57 0.005312578858592432 58-59 0.006972759751902567 60-61 0.007636832109226622 62-63 0.007636832109226622 64-65 0.005312578858592432 66-67 0.007636832109226622 68-69 0.034531762580850806 70-71 0.007636832109226622 72-73 0.0059766512159164864 74-75 0.005312578858592432 76 0.00664072357324054 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 150586.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 93.02207801551693 #Duplication Level Percentage of deduplicated Percentage of total 1 94.92384749227136 88.30013546959098 2 3.7351838188801336 6.949091212043284 3 0.8209845765498759 2.2910907398807607 4 0.2735484132716964 1.0178416736152245 5 0.11589044653251017 0.5390185079300127 6 0.051843865850833094 0.28935744802813146 7 0.034872438146892656 0.2270734663324076 8 0.019923094371294674 0.14826301111336634 9 0.009960919720251428 0.08339269061911765 >10 0.013944934405135095 0.15473578084670103 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0013281447146481081 0.0 2 0.0 0.0 0.0 0.0013281447146481081 0.0 3 0.0 0.0 0.0 0.00332036178662027 0.0 4 0.0 0.0 0.0 0.00796886828788865 0.0 5 0.0 0.0 0.0 0.008632940645212703 0.0 6 0.0 0.0 0.0 0.008632940645212703 0.0 7 0.0 0.0 0.0 0.011953302431832973 0.0 8 0.0 0.0 0.0 0.012617374789157027 0.0 9 0.0 0.0 0.0 0.014609591861129189 0.0 10 0.0 0.0 0.0 0.0159377365757773 0.0 11 0.0 0.0 0.0 0.01792995364774946 0.0 12 0.0 0.0 0.0 0.01792995364774946 0.0 13 0.0 0.0 0.0 0.018594026005073514 0.0 14 0.0 0.0 0.0 0.019258098362397568 0.0 15 0.0 0.0 0.0 0.020586243077045676 0.0 16 0.0 0.0 0.0 0.020586243077045676 0.0 17 0.0 0.0 0.0 0.020586243077045676 0.0 18 0.0 0.0 0.0 0.02125031543436973 0.0 19 0.0 0.0 0.0 0.021914387791693784 0.0 20 0.0 0.0 0.0 0.023906604863665946 0.0 21 0.0 0.0 0.0 0.025898821935638108 0.0 22 0.0 0.0 0.0 0.03253954550887865 0.0 23 0.0 0.0 0.0 0.03718805201014703 0.0 24 0.0 0.0 0.0 0.04117248615409135 0.0 25 0.0 0.0 0.0 0.043164703226063514 0.0 26 0.0 0.0 0.0 0.05378986094324838 0.0 27 0.0 0.0 0.0 0.08765755116677514 0.0 28 0.0 0.0 0.0 0.12086116903297783 0.0 29 0.0 0.0 0.0 0.1427755568246716 0.0 30 0.0 0.0 0.0 0.18992469419467944 0.0 31 0.0 0.0 0.0 0.20719057548510486 0.0 32 0.0 0.0 0.0 0.24371455513792784 0.0 33 0.0 0.0 0.0 0.2901996201506116 0.0 34 0.0 0.0 0.0 0.34465355345118404 0.0 35 0.0 0.0 0.0 0.45289734769500484 0.0 36 0.0 0.0 0.0 0.527937524072623 0.0 37 0.0 0.0 0.0 0.8705988604518349 0.0 38 0.0 0.0 0.0 1.1627906976744187 0.0 39 0.0 0.0 0.0 1.5565856055675826 0.0 40 0.0 0.0 0.0 2.0227644004090686 0.0 41 0.0 0.0 6.640723573240541E-4 2.6283983902886057 0.0 42 0.0 0.0 6.640723573240541E-4 3.3011036882578724 0.0 43 0.0 0.0 6.640723573240541E-4 4.010997038237286 0.0 44 0.0 0.0 6.640723573240541E-4 4.714913737000783 0.0 45 0.0 0.0 6.640723573240541E-4 5.157185926978603 0.0 46 0.0 0.0 6.640723573240541E-4 5.688443812837847 0.0 47 0.0 0.0 6.640723573240541E-4 6.256225678349913 0.0 48 0.0 0.0 6.640723573240541E-4 6.662637961032234 0.0 49 0.0 0.0 6.640723573240541E-4 7.021237033987223 0.0 50 0.0 0.0 6.640723573240541E-4 7.587690754784641 0.0 51 0.0 0.0 6.640723573240541E-4 8.247114605607427 0.0 52 0.0 0.0 6.640723573240541E-4 8.911851035288805 0.0 53 0.0 0.0 6.640723573240541E-4 9.691471982787245 0.0 54 0.0 0.0 6.640723573240541E-4 10.530859442444848 0.0 55 0.0 0.0 6.640723573240541E-4 11.029577782795213 0.0 56 0.0 0.0 6.640723573240541E-4 11.48579549227684 0.0 57 0.0 0.0 6.640723573240541E-4 11.884238906671271 0.0 58 0.0 0.0 6.640723573240541E-4 12.238853545482316 0.0 59 0.0 0.0 6.640723573240541E-4 12.608741848511814 0.0 60 0.0 0.0 6.640723573240541E-4 12.898941468662425 0.0 61 0.0 0.0 6.640723573240541E-4 13.221016561964591 0.0 62 0.0 0.0 6.640723573240541E-4 13.431527499236317 0.0 63 0.0 0.0 6.640723573240541E-4 13.732352277104113 0.0 64 0.0 0.0 6.640723573240541E-4 14.039153706187827 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATAGCGA 15 0.0022217254 69.995346 8 GTAGATC 100 0.0 52.496513 38 TCGACTA 20 0.00694219 52.496513 21 CCTACGA 110 0.0 50.90571 21 CGTGTAT 35 2.0795766E-5 49.996677 35 CGGAGTG 35 2.0795766E-5 49.996677 32 ATCGGTG 45 1.6767426E-6 46.663567 44 TCGGTGG 175 0.0 45.996944 45 CGGTGGT 170 0.0 45.291107 46 CCCGTGT 70 3.8016879E-10 44.99701 33 GCCTACG 135 0.0 44.071148 20 TGCCTAC 145 0.0 43.44539 19 ATCTCGT 75 7.4760464E-10 41.997215 42 AGATCTC 150 0.0 41.997215 40 TCTCGGT 185 0.0 41.61886 43 TTAGATC 60 2.5811278E-7 40.83062 38 CCGTGTA 60 2.5811278E-7 40.83062 34 GATCTCG 155 0.0 40.64246 41 GTGTAGA 210 0.0 39.997345 36 TGTAGAT 205 0.0 39.265682 37 >>END_MODULE