##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779717_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 150586 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.56853890799942 34.0 34.0 34.0 34.0 34.0 2 33.59741941481944 34.0 34.0 34.0 34.0 34.0 3 33.62623351440373 34.0 34.0 34.0 34.0 34.0 4 33.66401923153547 34.0 34.0 34.0 34.0 34.0 5 33.66886695974394 34.0 34.0 34.0 34.0 34.0 6 37.27054307837382 38.0 38.0 38.0 36.0 38.0 7 37.256165911837755 38.0 38.0 38.0 36.0 38.0 8 37.129341373036006 38.0 38.0 38.0 36.0 38.0 9 37.14292829346686 38.0 38.0 38.0 36.0 38.0 10-11 37.05740905529066 38.0 38.0 38.0 35.5 38.0 12-13 37.015213897706296 38.0 38.0 38.0 35.0 38.0 14-15 37.04075412056898 38.0 38.0 38.0 35.5 38.0 16-17 37.001866043324085 38.0 37.5 38.0 35.0 38.0 18-19 36.99077935531855 38.0 38.0 38.0 35.0 38.0 20-21 37.010309723347454 38.0 38.0 38.0 35.0 38.0 22-23 36.95760894107022 38.0 37.0 38.0 35.0 38.0 24-25 36.921818761372236 38.0 37.0 38.0 35.0 38.0 26-27 36.827842561725525 38.0 37.0 38.0 34.5 38.0 28-29 36.76454650498718 38.0 37.0 38.0 34.5 38.0 30-31 36.476870359794404 38.0 37.0 38.0 34.0 38.0 32-33 36.51667153653062 38.0 37.0 38.0 34.0 38.0 34-35 36.58813568326404 38.0 37.0 38.0 34.0 38.0 36-37 36.58635264898463 38.0 37.0 38.0 34.0 38.0 38-39 36.321152032725486 38.0 37.0 38.0 34.0 38.0 40-41 36.6475336352649 38.0 37.0 38.0 34.0 38.0 42-43 36.75696943939012 38.0 37.0 38.0 34.0 38.0 44-45 36.72646195529465 38.0 37.0 38.0 34.0 38.0 46-47 36.74586614957566 38.0 37.0 38.0 34.0 38.0 48-49 36.720485304078736 38.0 37.0 38.0 34.0 38.0 50-51 36.64252652969068 38.0 37.0 38.0 34.0 38.0 52-53 36.63405960713479 38.0 37.0 38.0 34.0 38.0 54-55 36.625941322566504 38.0 37.0 38.0 34.0 38.0 56-57 36.63794775078692 38.0 37.0 38.0 34.0 38.0 58-59 36.58036935704514 38.0 37.0 38.0 34.0 38.0 60-61 36.61106942212423 38.0 37.0 38.0 34.0 38.0 62-63 36.645059965733864 38.0 37.0 38.0 34.0 38.0 64-65 36.702425856321305 38.0 37.0 38.0 34.0 38.0 66-67 36.62531045382705 38.0 37.0 38.0 34.0 38.0 68-69 36.447305858446335 38.0 37.0 38.0 34.0 38.0 70-71 35.36195927908305 38.0 36.5 38.0 28.5 38.0 72-73 33.51023999574994 38.0 34.5 38.0 19.0 38.0 74-75 33.28970820660619 38.0 34.0 38.0 11.0 38.0 76 32.81621797511057 38.0 34.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 5.0 22 14.0 23 19.0 24 58.0 25 128.0 26 223.0 27 385.0 28 712.0 29 1068.0 30 1735.0 31 2732.0 32 3969.0 33 6256.0 34 10288.0 35 18792.0 36 24759.0 37 79440.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.874516887360045 15.675427994634294 11.170361122547913 37.27969399545775 2 18.67969133916832 16.480283691711048 41.06025792570359 23.77976704341705 3 17.629128869881665 18.304490457280227 38.26783366315594 25.798547009682178 4 13.045701459631044 26.455978643432985 32.03219422788307 28.4661256690529 5 12.984606802757229 30.160174252586565 42.434887705364375 14.420331239291833 6 26.473244524723416 43.19857091628704 16.027386344016044 14.300798214973504 7 25.450573094444373 26.072144820899684 18.219489195542746 30.2577928891132 8 22.116265788320295 42.25027559002829 15.910509609127011 19.722949012524403 9 20.86714568419375 16.199381084562976 16.652278432257976 46.2811947989853 10-11 22.644867384750242 27.771505983291938 27.81599883123265 21.76762780072517 12-13 22.061811855019723 18.804536942345237 29.037891968708912 30.095759233926128 14-15 20.40229503406691 19.288645690834475 20.149947538283772 40.15911173681484 16-17 28.43491426825867 27.9650830754519 19.695722045874117 23.90428061041531 18-19 28.62882339659729 22.64453534857158 20.431846253967834 28.294795000863292 20-21 20.921599617494323 21.24865525347642 20.498585525878898 37.33115960315036 22-23 21.291819956702483 28.5903071998725 20.17285803461145 29.945014808813568 24-25 28.354561513022457 28.91636672731861 20.278113503247315 22.450958256411617 26-27 28.599936249053698 29.88558033283307 20.722045874118443 20.792437543994794 28-29 28.295127037041958 22.762076155817937 21.105215624294424 27.837581182845682 30-31 28.917694872033255 28.397726216248522 20.770191120024435 21.91438779169378 32-33 21.706865180030015 28.89378826716959 21.007264951589125 28.392081601211267 34-35 27.186458236489447 22.454278618198238 21.519928811443297 28.839334333869022 36-37 22.027944164796196 27.378375147756103 28.794509449749643 21.799171237698058 38-39 19.857423664882525 22.29390514390448 30.15618981844262 27.692481372770377 40-41 19.902912621359224 19.83849760269879 30.766804351002087 29.491785424939902 42-43 27.340855059567293 19.930803660366834 30.152205384298675 22.5761358957672 44-45 19.94176085426268 27.33786673395933 31.208744504801246 21.511627906976745 46-47 26.62531709455062 20.124380752526797 24.91201041265456 28.33829174026802 48-49 26.044253781892074 19.593122866667553 23.69775410728753 30.664869244152843 50-51 19.69107353937285 20.100142111484466 31.152962426786026 29.05582192235666 52-53 17.54213539107221 20.27545721381802 38.862178422960966 23.320228972148804 54-55 17.23898635995378 20.261843730492874 32.95425869602752 29.544911213525825 56-57 24.64970183151156 20.08387233873003 25.342661336379212 29.923764493379203 58-59 18.35595606497284 20.34352463044373 37.42047733521044 23.880041969372982 60-61 24.6563425550848 28.034810672970927 24.866853492356526 22.441993279587745 62-63 17.70217682918731 37.79534618091988 21.573718672386544 22.928758317506276 64-65 17.44053232040163 38.81436521323363 20.542082265283625 23.20302020108111 66-67 17.28978789528907 38.89903443879245 19.88929913803408 23.9218785278844 68-69 17.32066725990464 38.98569588142324 19.875353618530276 23.818283240141845 70-71 18.126187029338716 37.385945572629595 20.105122654164397 24.382744743867292 72-73 19.100049141354443 33.32647125230765 20.894372650844037 26.67910695549387 74-75 19.632635171928335 31.784495238601195 21.090273996254634 27.492595593215835 76 19.694393901159472 31.799104830462326 20.66593175992456 27.84056950845364 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.5 15 2.5 16 2.0 17 4.0 18 15.5 19 25.5 20 44.0 21 64.0 22 74.0 23 107.0 24 186.0 25 242.0 26 302.0 27 412.0 28 506.0 29 550.0 30 706.5 31 1044.5 32 1381.0 33 1536.0 34 1864.0 35 2397.0 36 2957.5 37 3313.0 38 3627.0 39 4485.5 40 5535.0 41 9706.5 42 13373.0 43 14118.0 44 14230.0 45 12111.5 46 10626.0 47 9706.5 48 7958.0 49 6739.0 50 6349.0 51 5880.5 52 4963.0 53 4282.0 54 4050.0 55 3687.0 56 3064.5 57 2603.5 58 2402.0 59 2191.5 60 1896.0 61 1831.0 62 1851.0 63 1821.0 64 1787.5 65 1691.5 66 1648.0 67 1697.0 68 1646.5 69 1540.0 70 1431.0 71 1378.0 72 1288.0 73 1256.0 74 1234.5 75 1155.0 76 1051.5 77 899.5 78 754.5 79 658.0 80 595.5 81 450.5 82 314.0 83 260.0 84 220.0 85 141.0 86 80.5 87 59.0 88 49.5 89 27.5 90 8.5 91 2.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 150586.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.8352436481479 #Duplication Level Percentage of deduplicated Percentage of total 1 48.315763387155194 16.83091389637815 2 23.78519549345178 16.571261604664443 3 12.38347598985836 12.941442099531164 4 6.05829536572812 8.441687806303374 5 2.9757706311836363 5.183084748914242 6 1.6451569857216388 3.4385666662239514 7 1.084697943077187 2.645000199221707 8 0.8063747450292621 2.247220857184599 9 0.5452084564500448 1.7093222477521148 >10 2.3524029204872563 12.451356699826013 >50 0.020969556017309418 0.4236781639727465 >100 0.015250586194406847 0.9496234709733973 >500 0.005718969822902568 1.3606842601569868 >1k 0.0038126465486017116 2.5487097074097194 >5k 0.0 0.0 >10k+ 0.0019063232743008558 12.25744757148739 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 18458 12.25744757148739 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 2267 1.5054520340536304 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 1571 1.0432576733560888 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 882 0.5857118191598156 TruSeq Adapter, Index 2 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 652 0.43297517697528326 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 515 0.3419972640218878 No Hit CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 297 0.19722949012524407 No Hit CTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 213 0.1414474121100235 No Hit CTTATACACATCTCCGAGCCCACGAGACGAGCACGTACCTCGTATGCCGT 180 0.11953302431832971 No Hit TTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 179 0.11886895196100568 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 164 0.10890786660114485 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0019922170719721623 0.0 2 0.0 0.0 0.0 0.0019922170719721623 0.0 3 0.0 0.0 0.0 0.0046485065012683785 0.0 4 0.0 0.0 0.0 0.012617374789157027 0.0 5 0.0 0.0 0.0 0.013945519503805135 0.0 6 0.0 0.0 0.0 0.013945519503805135 0.0 7 0.0 0.0 0.0 0.017265881290425406 0.0 8 0.0 0.0 0.0 0.018594026005073514 0.0 9 0.0 0.0 0.0 0.021914387791693784 0.0 10 0.0 0.0 0.0 0.022578460149017838 0.0 11 0.0 0.0 0.0 0.025898821935638108 0.0 12 0.0 0.0 0.0 0.02789103900761027 0.0 13 0.0 0.0 0.0 0.029219183722258377 0.0 14 0.0 0.0 0.0 0.030547328436906485 0.0 15 0.0 0.0 0.0 0.033203617866202705 0.0 16 0.0 0.0 0.0 0.033203617866202705 0.0 17 0.0 0.0 0.0 0.035195834938174866 0.0 18 0.0 0.0 0.0 0.036523979652822974 0.0 19 0.0 0.0 0.0 0.03718805201014703 0.0 20 0.0 0.0 0.0 0.04449284794071162 0.0 21 0.0 0.0 0.0 0.04714913737000784 0.0 22 0.0 0.0 0.0 0.05246171622860027 0.0 23 0.0 0.0 0.0 0.05711022272986865 0.0 24 0.0 0.0 0.0 0.06043058451648892 0.0 25 0.0 0.0 0.0 0.06308687394578513 0.0 26 0.0 0.0 0.0 0.0750401763776181 0.0 27 0.0 0.0 0.0 0.11687673488903351 0.0 28 0.0 0.0 0.0 0.1587132934004489 0.0 29 0.0 0.0 0.0 0.21117500962904917 0.0 30 0.0 0.0 0.0 0.27359781121751026 0.0 31 0.0 0.0 0.0 0.3493020599524524 0.0 32 0.0 0.0 0.0 0.4157092956848578 0.0 33 0.0 0.0 0.0 0.5186405110700862 0.0 34 0.0 0.0 0.0 0.6474705483909526 0.0 35 0.0 0.0 0.0 0.8221215783671789 0.0 36 0.0 0.0 0.0 1.0837660871528563 0.0 37 0.0 0.0 0.0 1.575179631572656 0.0 38 0.0 0.0 0.0 2.087843491426826 0.0 39 0.0 0.0 0.0 2.7167200138127052 0.0 40 0.0 0.0 0.0 3.3973941800698606 0.0 41 0.0 0.0 0.0 4.1989295153599935 0.0 42 0.0 0.0 0.0 5.131287105042966 0.0 43 0.0 0.0 0.0 6.098840529664113 0.0 44 0.0 0.0 0.0 7.03053404698976 0.0 45 0.0 0.0 0.0 7.889843677367086 0.0 46 0.0 0.0 0.0 8.76177068253357 0.0 47 0.0 0.0 0.0 9.557329366607785 0.0 48 0.0 0.0 0.0 10.360192846612566 0.0 49 0.0 0.0 0.0 11.1092664656741 0.0 50 0.0 0.0 0.0 11.819159815653514 0.0 51 0.0 0.0 0.0 12.595460401365333 0.0 52 0.0 0.0 0.0 13.54508387233873 0.0 53 0.0 0.0 0.0 14.388455766140279 0.0 54 0.0 0.0 0.0 15.33542294768438 0.0 55 0.0 0.0 0.0 16.158208598408883 0.0 56 0.0 0.0 0.0 16.80767136387181 0.0 57 0.0 0.0 0.0 17.46842335940924 0.0 58 0.0 0.0 0.0 18.08401843464864 0.0 59 0.0 0.0 0.0 18.625237405867743 0.0 60 0.0 0.0 0.0 19.263410941256158 0.0 61 0.0 0.0 0.0 19.948733614014582 0.0 62 0.0 0.0 0.0 20.5676490510406 0.0 63 0.0 0.0 0.0 21.226408829506063 0.0 64 0.0 0.0 0.0 21.93032552826956 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTCA 15 0.0022211405 70.0 2 TTGTACT 15 0.0022211405 70.0 4 GAGTTGC 15 0.0022211405 70.0 35 GTTATAG 15 0.0022211405 70.0 16 TTAATAC 25 2.3843459E-4 55.999996 3 CATGCCG 25 2.3843459E-4 55.999996 43 CGCATGC 25 2.3843459E-4 55.999996 41 GCCTATG 25 2.3843459E-4 55.999996 1 GGCCGAA 20 0.006940367 52.5 12 CGATTTC 20 0.006940367 52.5 16 GGCCCTA 20 0.006940367 52.5 12 GCACAAA 20 0.006940367 52.5 23 TAGATTG 20 0.006940367 52.5 64 AATACGG 20 0.006940367 52.5 6 CTTGAAA 2695 0.0 47.792206 57 TCTCGTA 2700 0.0 47.703705 38 CTCGTAT 2715 0.0 47.69797 39 TCGTATG 2725 0.0 47.651375 40 TCTTCTG 2675 0.0 47.626167 50 CCGTCTT 2675 0.0 47.626167 47 >>END_MODULE