##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779716_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 80658 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.567036127848446 34.0 34.0 34.0 34.0 34.0 2 33.59506806516403 34.0 34.0 34.0 34.0 34.0 3 33.61266086439039 34.0 34.0 34.0 34.0 34.0 4 33.66079000223164 34.0 34.0 34.0 34.0 34.0 5 33.65330159438617 34.0 34.0 34.0 34.0 34.0 6 37.24370800168613 38.0 38.0 38.0 36.0 38.0 7 37.24261697537752 38.0 38.0 38.0 36.0 38.0 8 37.110181259143545 38.0 38.0 38.0 36.0 38.0 9 37.12231892682685 38.0 38.0 38.0 36.0 38.0 10-11 37.02704629422996 38.0 38.0 38.0 35.0 38.0 12-13 36.990304743484835 38.0 38.0 38.0 35.0 38.0 14-15 37.02276897517915 38.0 38.0 38.0 35.0 38.0 16-17 36.941964839197595 38.0 37.5 38.0 35.0 38.0 18-19 36.935995189565816 38.0 38.0 38.0 35.0 38.0 20-21 36.99652855265442 38.0 38.0 38.0 35.0 38.0 22-23 36.92638052022118 38.0 37.0 38.0 35.0 38.0 24-25 36.896904212849314 38.0 37.0 38.0 34.5 38.0 26-27 36.79440972997099 38.0 37.0 38.0 34.5 38.0 28-29 36.64464157306157 38.0 37.0 38.0 34.0 38.0 30-31 36.396395893773715 38.0 37.0 38.0 34.0 38.0 32-33 36.46108259565077 38.0 37.0 38.0 34.0 38.0 34-35 36.471850281435195 38.0 37.0 38.0 34.0 38.0 36-37 36.55379503583029 38.0 37.0 38.0 34.0 38.0 38-39 35.89350095464802 38.0 37.0 38.0 32.0 38.0 40-41 36.4433782141883 38.0 37.0 38.0 34.0 38.0 42-43 36.72087703637581 38.0 37.0 38.0 34.0 38.0 44-45 36.67938084256986 38.0 37.0 38.0 34.0 38.0 46-47 36.70705943613777 38.0 37.0 38.0 34.0 38.0 48-49 36.671353120583206 38.0 37.0 38.0 34.0 38.0 50-51 36.56994966401349 38.0 37.0 38.0 34.0 38.0 52-53 36.53471447345582 38.0 37.0 38.0 34.0 38.0 54-55 36.52384760346153 38.0 37.0 38.0 34.0 38.0 56-57 36.57123905874185 38.0 37.0 38.0 34.0 38.0 58-59 36.4303354905899 38.0 37.0 38.0 34.0 38.0 60-61 36.4851471645714 38.0 37.0 38.0 34.0 38.0 62-63 36.51883260184979 38.0 37.0 38.0 34.0 38.0 64-65 36.56475489102135 38.0 37.0 38.0 34.0 38.0 66-67 36.46542190483275 38.0 37.0 38.0 34.0 38.0 68-69 36.2142440923405 38.0 37.0 38.0 34.0 38.0 70-71 34.62745170968782 38.0 35.5 38.0 26.0 38.0 72-73 32.01332167918867 38.0 27.0 38.0 11.0 38.0 74-75 31.681903840908525 38.0 25.0 38.0 11.0 38.0 76 31.280914478415035 37.0 25.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 2.0 20 4.0 21 4.0 22 8.0 23 26.0 24 27.0 25 83.0 26 145.0 27 228.0 28 410.0 29 708.0 30 1103.0 31 1570.0 32 2493.0 33 3724.0 34 6258.0 35 12206.0 36 14153.0 37 37506.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.50018597039352 13.837437080016862 11.261127228545217 42.40124972104441 2 16.61087554861266 13.90562622430509 45.21064246571946 24.27285576136279 3 17.787448238240472 15.253291675965187 41.363534925239904 25.595725160554437 4 13.740732475389919 29.471348161372706 27.63768008133105 29.15023928190632 5 14.651987403605347 27.209948176250343 42.85129807334672 15.28676634679759 6 27.64139948920132 42.638052022118075 13.476654516600957 16.243893972079647 7 24.359641945002355 23.336804780678914 15.685982791539587 36.61757048277914 8 21.29980907039599 43.84561977733145 14.125071288650847 20.72949986362171 9 20.192665327679833 14.043244315504971 13.433261424781175 52.330828932034024 10-11 24.119120236058418 27.291775149396212 25.738302462248008 22.85080215229735 12-13 22.423690148528355 14.947680329291577 28.210468893352182 34.41816062882789 14-15 21.416350516997696 15.110714374271616 16.786927521138633 46.68600758759205 16-17 32.99486721713903 26.188350814550326 14.829899080066452 25.98688288824419 18-19 33.54409977931513 18.46686007587592 15.509930819013611 32.479109325795335 20-21 22.91031267822163 16.41994594460562 15.500012398026234 45.16972897914652 22-23 22.7590567581641 26.926033375486625 15.297304669096679 35.0176051972526 24-25 33.340772149073864 27.07790919685586 15.142949242480597 24.438369411589676 26-27 33.15170224900196 29.1768950383099 15.475836246869498 22.195566465818644 28-29 23.329985866250095 28.935753428054255 16.238934761585956 31.495325944109698 30-31 22.724962186019987 28.788216915866993 25.972005256763126 22.514815641349898 32-33 41.96111978972947 17.643631133923478 19.18842520270773 21.206823873639316 34-35 25.566589798904015 25.916214138709115 27.173993900171094 21.343202162215775 36-37 31.936075776736345 27.58808797639416 18.21951945250316 22.256316794366338 38-39 22.1044409729971 18.295767313843637 27.830469389273226 31.76932232388604 40-41 20.953284237149447 15.604775719705422 29.538297503037512 33.90364254010761 42-43 31.282699794192766 15.431203352426293 28.99340425004339 24.29269260333755 44-45 21.213022886756427 25.95092861216494 30.250564110193658 22.58548439088497 46-47 30.812194698603985 16.556324233182078 21.090282427037614 31.541198641176326 48-49 30.213989932802697 15.554563713456817 18.937985072776414 35.293461280964074 50-51 21.337003149098663 15.839098415532247 29.731706712291405 33.09219172307768 52-53 19.08490168365196 16.00337226313571 40.40578739864614 24.505938654566194 54-55 19.02539115772769 15.719457462371992 31.962731533139927 33.292419846760396 56-57 29.22896674849364 15.927744303106945 21.584343772471424 33.25894517592799 58-59 20.36499789233554 16.84767784968633 37.99685090133651 24.790473356641623 60-61 29.499863621711427 27.369882714671824 20.530511542562422 22.599742121054327 62-63 19.170448064668104 41.10069676907436 16.751593146371096 22.977262019886435 64-65 18.35651764239133 42.756453172654915 16.0194896972402 22.867539487713557 66-67 18.7321778372883 42.570482779141564 15.844057626025936 22.8532817575442 68-69 18.57224329886682 42.6058171539091 16.231495945845424 22.59044360137866 70-71 18.789828659277443 40.76099085025664 16.59971732500186 23.84946316546406 72-73 19.33534181358328 35.18807805797317 18.615636390686603 26.860943737756948 74-75 20.319745096580625 32.30367725458107 19.859778323290932 27.516799325547375 76 20.336482431996828 33.041979716829076 19.6583103969848 26.963227454189294 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.5 16 6.0 17 10.0 18 9.5 19 13.0 20 26.5 21 36.0 22 44.5 23 57.0 24 81.0 25 101.0 26 120.5 27 180.5 28 255.5 29 290.0 30 328.5 31 418.0 32 543.0 33 617.0 34 675.0 35 805.5 36 984.0 37 1090.0 38 1319.0 39 4239.5 40 7452.0 41 7122.0 42 6271.0 43 5357.5 44 3756.0 45 2644.0 46 2220.0 47 2040.0 48 1782.0 49 1749.0 50 1794.0 51 1692.0 52 1459.5 53 1421.5 54 1514.0 55 1521.5 56 1569.0 57 1706.0 58 1803.0 59 1792.0 60 1852.5 61 1942.5 62 1961.0 63 1908.5 64 1962.0 65 2024.5 66 2087.5 67 2194.0 68 2163.5 69 2038.0 70 1885.0 71 1827.0 72 1748.0 73 1588.5 74 1428.0 75 1348.0 76 1256.5 77 1009.0 78 812.5 79 772.0 80 656.0 81 440.5 82 271.5 83 202.0 84 161.5 85 110.0 86 70.5 87 42.0 88 33.5 89 19.0 90 9.0 91 5.0 92 5.0 93 2.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 80658.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.416648069627314 #Duplication Level Percentage of deduplicated Percentage of total 1 57.46880264999 24.951027796374817 2 24.518118735543563 21.289890649408612 3 10.922641994345925 14.226735103771478 4 4.197721237042748 7.290039425723426 5 1.5762871583997258 3.4218552406456895 6 0.6110968331477198 1.5919065684742988 7 0.2741368971129958 0.83314736293982 8 0.13135726319997715 0.4562473654194253 9 0.05140066820868672 0.2008480249944209 >10 0.19703589479996572 1.4071759775843686 >50 0.014277963391301864 0.39921644474199713 >100 0.022844741426082983 1.7580401200128941 >500 0.005711185356520746 1.5423144635374049 >1k 0.005711185356520746 3.470207542959161 >5k 0.0 0.0 >10k+ 0.002855592678260373 17.161347913412182 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT 13842 17.161347913412182 No Hit TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 1729 2.143618735897245 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 1070 1.3265888070619158 No Hit ATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT 738 0.9149743360856952 RNA PCR Primer, Index 47 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 506 0.6273401274517098 No Hit CTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 355 0.44012993131493466 No Hit CTTTACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 261 0.32358848471323365 No Hit TTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTC 157 0.19464901187730912 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGACCTCGTATGCCGT 152 0.18844999876019736 No Hit CTTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 145 0.17977138039624094 No Hit CTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG 121 0.15001611743410448 No Hit TCTTAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC 116 0.14381710431699274 No Hit TATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCT 111 0.137618091199881 No Hit CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATATCGTATGCCGT 94 0.11654144660170102 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.004959210493689405 0.0 2 0.0 0.0 0.0 0.004959210493689405 0.0 3 0.0 0.0 0.0 0.004959210493689405 0.0 4 0.0 0.0 0.0 0.004959210493689405 0.0 5 0.0 0.0 0.0 0.004959210493689405 0.0 6 0.0 0.0 0.0 0.004959210493689405 0.0 7 0.0 0.0 0.0 0.007438815740534107 0.0 8 0.0 0.0 0.0 0.007438815740534107 0.0 9 0.0 0.0 0.0 0.014877631481068214 0.0 10 0.0 0.0 0.0 0.017357236727912916 0.0 11 0.0 0.0 0.0 0.02107664459817997 0.0 12 0.0 0.0 0.0 0.023556249845024673 0.0 13 0.0 0.0 0.0 0.023556249845024673 0.0 14 0.0 0.0 0.0 0.026035855091869373 0.0 15 0.0 0.0 0.0 0.026035855091869373 0.0 16 0.0 0.0 0.0 0.026035855091869373 0.0 17 0.0 0.0 0.0 0.027275657715291727 0.0 18 0.0 0.0 0.0 0.027275657715291727 0.0 19 0.0 0.0 0.0 0.028515460338714077 0.0 20 0.0 0.0 0.0 0.03099506558555878 0.0 21 0.0 0.0 0.0 0.03719407870267054 0.0 22 0.0 0.0 0.0 0.04339309181978229 0.0 23 0.0 0.0 0.0 0.0533115128071611 0.0 24 0.0 0.0 0.0 0.06075032854769521 0.0 25 0.0 0.0 0.0 0.06818914428822931 0.0 26 0.0 0.0 0.0 0.07686776265218577 0.0 27 0.0 0.0 0.0 0.13389868332961394 0.0 28 0.0 0.0 0.0 0.19836841974757619 0.0 29 0.0 0.0 0.0 0.27275657715291723 0.0 30 0.0 0.0 0.0 0.35086414242852537 0.0 31 0.0 0.0 0.0 0.41781348409333235 0.0 32 0.0 0.0 0.0 0.5008802598626299 0.0 33 0.0 0.0 0.0 0.6335391405688214 0.0 34 0.0 0.0 0.0 0.8467851917974658 0.0 35 0.0 0.0 0.0 1.150536834535942 0.0 36 0.0 0.0 0.0 1.5051203848347343 0.0 37 0.0 0.0 0.0 2.025837486672122 0.0 38 0.0 0.0 0.0 2.6011059039400926 0.0 39 0.0 0.0 0.0 3.2073693867936224 0.0 40 0.0 0.0 0.0 3.8173522775174193 0.0 41 0.0 0.0 0.0 4.444692404969129 0.0 42 0.0 0.0 0.0 5.086910163901907 0.0 43 0.0 0.0 0.0 5.690694041508592 0.0 44 0.0 0.0 0.0 6.278360485010786 0.0 45 0.0 0.0 0.0 7.019762453817353 0.0 46 0.0 0.0 0.0 7.628505541917726 0.0 47 0.0 0.0 0.0 8.239728235264947 0.0 48 0.0 0.0 0.0 8.756725929232067 0.0 49 0.0 0.0 0.0 9.335713754370305 0.0 50 0.0 0.0 0.0 9.923380197872499 0.0 51 0.0 0.0 0.0 10.419301247241439 0.0 52 0.0 0.0 0.0 10.94745716481936 0.0 53 0.0 0.0 0.0 11.473133477150437 0.0 54 0.0 0.0 0.0 12.018646631456273 0.0 55 0.0 0.0 0.0 12.510848272954945 0.0 56 0.0 0.0 0.0 12.989412085595973 0.0 57 0.0 0.0 0.0 13.461776885119889 0.0 58 0.0 0.0 0.0 13.88454957970691 0.0 59 0.0 0.0 0.0 14.423863720895634 0.0 60 0.0 0.0 0.0 14.862753849587145 0.0 61 0.0 0.0 0.0 15.30288378090208 0.0 62 0.0 0.0 0.0 15.68846239678643 0.0 63 0.0 0.0 0.0 16.18810285402564 0.0 64 0.0 0.0 0.0 16.593518311884747 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACATTGG 25 2.8170962E-6 70.00001 27 GACATTG 25 2.8170962E-6 70.00001 26 GTCTGCG 15 0.0022173906 70.0 7 CTGAGTG 15 0.0022173906 70.0 9 AGACACG 15 0.0022173906 70.0 12 GATTGTT 15 0.0022173906 70.0 34 TTACCGG 15 0.0022173906 70.0 19 TCTTTAT 75 0.0 65.33333 1 CTATACA 45 3.783498E-10 62.222218 1 AGACATT 30 8.309949E-6 58.333332 25 AACAATT 20 0.006928738 52.500004 69 ATTACCG 20 0.006928738 52.500004 18 AAAAGCC 20 0.006928738 52.500004 70 AAGACAC 20 0.006928738 52.500004 11 GTTAGGG 20 0.006928738 52.500004 1 GTAGGCT 20 0.006928738 52.500004 4 ATTCACA 20 0.006928738 52.500004 36 GACCTTA 20 0.006928738 52.500004 16 AGAGACA 20 0.006928738 52.500004 6 CGTATGC 2205 0.0 50.0 41 >>END_MODULE