##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779715_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 166405 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.915753733361377 34.0 23.0 34.0 12.0 34.0 2 27.596370301373156 33.0 23.0 34.0 12.0 34.0 3 26.71387878969983 32.0 21.0 34.0 11.0 34.0 4 28.757447192091583 33.0 23.0 34.0 12.0 34.0 5 28.351077191190168 34.0 23.0 34.0 11.0 34.0 6 30.56129323037168 36.0 26.0 38.0 11.0 38.0 7 31.55343288963673 37.0 27.0 38.0 12.0 38.0 8 30.780661638772873 36.0 26.0 38.0 11.0 38.0 9 32.22319040894204 37.0 31.0 38.0 12.0 38.0 10-11 31.841738529491302 37.0 28.0 38.0 11.0 38.0 12-13 30.990895706258826 36.0 27.0 38.0 11.0 38.0 14-15 30.890580210931162 36.5 26.5 38.0 11.0 38.0 16-17 30.6135332471981 35.5 26.5 38.0 11.0 38.0 18-19 31.1891259277065 36.5 26.5 38.0 11.5 38.0 20-21 30.098680929058624 35.0 24.0 38.0 11.0 38.0 22-23 30.09060725338782 35.5 24.5 38.0 11.0 38.0 24-25 31.202557014512784 36.5 27.0 38.0 11.0 38.0 26-27 29.82446440912232 35.0 24.0 38.0 11.0 38.0 28-29 31.80309185421111 37.0 29.0 38.0 11.0 38.0 30-31 32.264955980889994 37.0 31.0 38.0 11.0 38.0 32-33 32.34979417685767 37.0 31.0 38.0 11.0 38.0 34-35 32.408999128631955 37.0 31.0 38.0 11.0 38.0 36-37 30.439139448934828 36.0 25.0 38.0 11.0 38.0 38-39 28.824103843033562 34.0 22.0 37.5 11.0 38.0 40-41 29.87765091193173 35.0 24.5 37.5 11.0 38.0 42-43 30.87544544935549 36.0 25.5 38.0 11.0 38.0 44-45 32.41760463928368 37.0 31.0 38.0 11.0 38.0 46-47 31.045614614945464 36.5 27.5 38.0 11.0 38.0 48-49 30.457699588353716 35.5 24.5 38.0 11.0 38.0 50-51 28.421060064300953 34.0 21.0 37.5 11.0 38.0 52-53 31.544583996875094 36.5 28.5 38.0 11.0 38.0 54-55 30.675784982422403 36.0 25.5 38.0 11.0 38.0 56-57 31.078951954568673 36.5 27.0 38.0 11.0 38.0 58-59 32.097500075117935 37.0 31.0 38.0 11.0 38.0 60-61 32.57883477058983 37.5 32.0 38.0 11.0 38.0 62-63 32.46375409392746 37.5 31.5 38.0 11.0 38.0 64-65 32.18459180914035 37.5 30.0 38.0 11.0 38.0 66-67 30.19024668729906 36.0 24.0 38.0 11.0 38.0 68-69 30.249130134310867 36.0 24.5 38.0 11.0 38.0 70-71 29.83102971665515 35.0 24.0 38.0 11.0 38.0 72-73 28.68658093206334 34.0 21.5 37.5 11.0 38.0 74-75 30.66216459841952 35.5 25.5 38.0 11.0 38.0 76 31.001177849223282 36.0 26.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 1.0 4 2.0 5 2.0 6 0.0 7 0.0 8 1.0 9 1.0 10 1.0 11 4.0 12 60.0 13 324.0 14 867.0 15 1513.0 16 2442.0 17 3769.0 18 5030.0 19 5312.0 20 4931.0 21 3889.0 22 3274.0 23 2805.0 24 2657.0 25 2750.0 26 2983.0 27 3415.0 28 4035.0 29 4887.0 30 5777.0 31 7267.0 32 9276.0 33 12371.0 34 16444.0 35 21500.0 36 24815.0 37 13999.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.94291036927977 16.07944472822331 10.793545867011208 33.184099035485715 2 20.796250112676905 16.500105165109222 38.18995823442805 24.513686487785826 3 21.882286483497992 15.192543448474796 35.80322588399317 27.121944184034035 4 15.458162063411937 17.50679070214658 30.112857863993653 36.922189370447825 5 15.853489979267449 26.31291127069499 38.201376160572096 19.63222258946546 6 29.803791953366787 31.408311048345904 15.656981460893604 23.130915537393708 7 28.22210871067576 25.02088278597398 18.402091283314803 28.354917220035457 8 24.45747871080956 30.66304485002915 17.302988599691105 27.576487839470186 9 23.612663613745358 15.471940768518852 18.32834529261169 42.587050325124096 10-11 25.484757883982635 22.335071139890925 25.821902372331312 26.358268603795125 12-13 25.002403846153847 18.13311298076923 28.207031249999996 28.65745192307692 14-15 24.855694544187067 21.19494833248698 22.54560533171475 31.4037517916112 16-17 26.044875011643942 21.229840951227647 24.419530576247556 28.305753460880855 18-19 23.108959623549772 21.033495295874612 26.78451770319688 29.07302737737873 20-21 25.65377692707567 20.7802353987566 25.779979987800374 27.786007686367363 22-23 26.17332696300703 20.035277184315774 25.717187561036443 28.07420829164075 24-25 24.12214015709229 23.407292111130477 22.03318529558471 30.43738243619252 26-27 24.964993780010698 22.295506583573218 25.508266275638675 27.231233360777406 28-29 24.521481499287855 23.203564925269983 23.765767823123937 28.509185752318224 30-31 23.956646243806283 23.12340555954531 24.44943914758847 28.470509049059938 32-33 24.557086022668543 22.410425606077 24.72896308849866 28.303525282755803 34-35 24.192671163929745 22.674619510509473 24.564371459907754 28.56833786565303 36-37 25.00413169748162 20.326449174111232 29.173991039474988 25.495428088932158 38-39 25.007737542556484 18.867884841327793 32.35284396005926 23.77153365605647 40-41 24.405715230096607 21.88824952297961 24.376568157574482 29.329467089349297 42-43 21.874230013401522 22.463476343006867 25.91241533903449 29.74987830455712 44-45 22.196781211312636 20.413406411134748 28.375040565391412 29.014771812161204 46-47 23.928172213608338 20.012860731499178 28.74523732256397 27.31372973232851 48-49 24.209716579725473 20.539556239332676 29.017824947715088 26.232902233226763 50-51 26.009248881450254 19.275414141353437 30.304960681736915 24.410376295459393 52-53 20.68379047573259 22.56785018870646 28.142803913555614 28.605555422005335 54-55 23.018813496678113 21.30573659902702 27.404122081894748 28.27132782240011 56-57 23.098303760573327 21.632236061238903 26.477861746720954 28.79159843146682 58-59 20.652778153386638 22.765202393079182 27.517105227573897 29.06491422596028 60-61 20.81407717687218 21.96944656454143 27.361971670162323 29.85450458842407 62-63 21.14611441312043 22.864895400758428 26.871878699736172 29.11711148638497 64-65 21.349587437424503 22.98751795383386 26.149195608146687 29.513699000594958 66-67 20.027885369496172 24.939676854241853 22.338945464270367 32.69349231199161 68-69 20.65074957021435 24.734614875993316 22.63918442913646 31.975451124655873 70-71 20.735412103018994 25.112307049727605 22.08670254482516 32.065578302428236 72-73 19.974699215134798 25.6508491688602 21.59971874661955 32.774732869385446 74-75 21.978665865384617 25.046875 24.186298076923077 28.788161057692307 76 22.26843032025818 24.506451438427376 24.666911062098475 28.558207179215973 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 1.0 3 1.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 1.0 10 1.0 11 0.0 12 0.0 13 1.5 14 5.0 15 9.0 16 13.5 17 16.0 18 24.0 19 42.5 20 83.5 21 114.0 22 123.5 23 179.5 24 281.5 25 337.0 26 386.5 27 552.5 28 813.5 29 958.0 30 1122.5 31 1516.0 32 2008.5 33 2272.0 34 2493.5 35 2951.5 36 3545.5 37 3903.0 38 4233.5 39 4816.0 40 5400.0 41 5896.5 42 6061.0 43 6239.5 44 6508.0 45 6748.5 46 6899.0 47 6894.5 48 6931.5 49 6876.5 50 6780.0 51 6651.0 52 6473.5 53 6294.5 54 6164.0 55 6026.5 56 5831.5 57 5592.5 58 5411.0 59 5299.5 60 5029.0 61 4736.5 62 4603.0 63 4470.5 64 4120.5 65 3769.0 66 3474.0 67 3313.0 68 3263.5 69 3047.5 70 2749.0 71 2617.0 72 2508.5 73 2250.5 74 1921.0 75 1741.0 76 1576.5 77 1311.0 78 1028.5 79 847.0 80 746.5 81 535.5 82 363.5 83 302.0 84 243.0 85 154.5 86 101.5 87 78.0 88 57.5 89 31.0 90 20.0 91 11.5 92 8.0 93 6.0 94 3.0 95 1.5 96 1.0 97 1.0 98 0.5 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.00943481265587E-4 4 6.00943481265587E-4 5 0.0 6 0.0 7 0.0 8 0.0036056608875935222 9 0.004206604368859109 10-11 0.004507076109491902 12-13 0.003004717406327935 14-15 0.002704245665695141 16-17 0.005708963072023077 18-19 0.005108019590757489 20-21 0.0039061326282263152 22-23 0.005108019590757489 24-25 0.0036056608875935222 26-27 0.0036056608875935222 28-29 0.0036056608875935222 30-31 0.0039061326282263152 32-33 0.004206604368859109 34-35 0.004507076109491902 36-37 0.005108019590757489 38-39 0.005108019590757489 40-41 0.004507076109491902 42-43 0.0036056608875935222 44-45 0.004206604368859109 46-47 0.004206604368859109 48-49 0.005408491331390282 50-51 0.0039061326282263152 52-53 0.005408491331390282 54-55 0.005108019590757489 56-57 0.004507076109491902 58-59 0.005108019590757489 60-61 0.004807547850124696 62-63 0.004807547850124696 64-65 0.0036056608875935222 66-67 0.005708963072023077 68-69 0.02584056969442024 70-71 0.005108019590757489 72-73 0.004206604368859109 74-75 0.003004717406327935 76 0.004807547850124696 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 166405.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.50778109602896 #Duplication Level Percentage of deduplicated Percentage of total 1 96.76156014928064 93.38243465397015 2 2.898976297462541 5.595475398361828 3 0.30179286924874704 0.8737608048540173 4 0.03465685678989358 0.133786253942219 5 0.003013827218202448 0.014542888871776788 6 0.0 0.0 7 0.0 0.0 8 0.0 0.0 9 0.0 0.0 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.00943481265587E-4 0.0 2 0.0 0.0 0.0 0.001201886962531174 0.0 3 0.0 0.0 0.0 0.001201886962531174 0.0 4 0.0 0.0 0.0 0.004807547850124696 0.0 5 0.0 0.0 0.0 0.005408491331390283 0.0 6 0.0 0.0 0.0 0.005408491331390283 0.0 7 0.0 0.0 0.0 0.00600943481265587 0.0 8 0.0 0.0 0.0 0.007211321775187044 0.0 9 0.0 0.0 0.0 0.015624530512905261 0.0 10 0.0 0.0 0.0 0.017427360956702023 0.0 11 0.0 0.0 0.0 0.01802830443796761 0.0 12 0.0 0.0 0.0 0.019230191400498784 0.0 13 0.0 0.0 0.0 0.01983113488176437 0.0 14 0.0 0.0 0.0 0.021033021844295546 0.0 15 0.0 0.0 0.0 0.02403773925062348 0.0 16 0.0 0.0 0.0 0.02584056969442024 0.0 17 0.0 0.0 0.0 0.028845287100748174 0.0 18 0.0 0.0 0.0 0.03004717406327935 0.0 19 0.0 0.0 0.0 0.034253778432138456 0.0 20 0.0 0.0 0.0 0.042666987169856674 0.0 21 0.0 0.0 0.0 0.044469817613653435 0.0 22 0.0 0.0 0.0 0.05348396983263724 0.0 23 0.0 0.0 0.0 0.06189717857035546 0.0 24 0.0 0.0 0.0 0.06490189597668339 0.0 25 0.0 0.0 0.0 0.07091133078933927 0.0 26 0.0 0.0 0.0 0.08353114389591659 0.0 27 0.0 0.0 0.0 0.13641417024728825 0.0 28 0.0 0.0 0.0 0.18268681830473843 0.0 29 0.0 0.0 0.0 0.20912833148042426 0.0 30 0.0 0.0 0.0 0.27403022745710764 0.0 31 0.0 0.0 0.0 0.2950632493014032 0.0 32 0.0 0.0 0.0 0.33292268862113517 0.0 33 0.0 0.0 0.0 0.3713830714221327 0.0 34 0.0 0.0 0.0 0.4362849673988161 0.0 35 0.0 0.0 0.0 0.6003425377843213 0.0 36 0.0 0.0 0.0 0.728944442775157 0.0 37 0.0 0.0 0.0 1.132177518704366 0.0 38 0.0 0.0 0.0 1.5155794597518104 0.0 39 0.0 0.0 0.0 1.945254048856705 0.0 40 0.0 0.0 0.0 2.423605059944112 0.0 41 0.0 0.0 0.0 2.9776749496709836 0.0 42 0.0 0.0 0.0 3.606862774556053 0.0 43 0.0 0.0 0.0 4.263093056098074 0.0 44 0.0 0.0 0.0 4.872449746101379 0.0 45 0.0 0.0 0.0 5.3009224482437425 0.0 46 0.0 0.0 0.0 5.838165920495177 0.0 47 0.0 0.0 0.0 6.44511883657342 0.0 48 0.0 0.0 0.0 6.822511342808209 0.0 49 0.0 0.0 0.0 7.1728613923860465 0.0 50 0.0 0.0 0.0 7.689672786274451 0.0 51 0.0 0.0 0.0 8.285207776208647 0.0 52 0.0 0.0 0.0 8.833268231122863 0.0 53 0.0 0.0 0.0 9.542381539016256 6.00943481265587E-4 54 0.0 0.0 0.0 10.22685616417776 6.00943481265587E-4 55 0.0 0.0 0.0 10.651122261951263 6.00943481265587E-4 56 0.0 0.0 0.0 11.11204591208197 6.00943481265587E-4 57 0.0 0.0 0.0 11.49725068357321 6.00943481265587E-4 58 0.0 0.0 0.0 11.830173372194345 6.00943481265587E-4 59 0.0 0.0 0.0 12.20936870887293 6.00943481265587E-4 60 0.0 0.0 0.0 12.432919683903728 6.00943481265587E-4 61 0.0 0.0 0.0 12.693128211291729 6.00943481265587E-4 62 0.0 0.0 0.0 12.88482918181545 6.00943481265587E-4 63 0.0 0.0 0.0 13.158859409272559 6.00943481265587E-4 64 0.0 0.0 0.0 13.43349058021093 6.00943481265587E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCACAG 20 0.0069268025 52.52841 63 TCAACGA 20 0.0069268025 52.52841 63 CGTATTA 20 0.0069432957 52.496845 56 CTCGGTT 60 8.367351E-11 52.496845 44 ACGGATG 20 0.0069432957 52.496845 69 AAGGCGT 20 0.0069432957 52.496845 39 TATCTCG 50 6.161645E-8 48.997055 41 CGGTGGT 180 0.0 48.60819 46 TCGGTGT 65 1.8371793E-10 48.458626 45 TCTCGGT 190 0.0 47.891857 43 GTTAGTG 30 5.866577E-4 46.663864 32 ACGATTG 30 5.866577E-4 46.663864 24 TTGGTCG 45 1.6777449E-6 46.663864 48 GACGATT 45 1.6777449E-6 46.663864 23 ATCTCGT 85 1.8189894E-12 45.291397 42 CGTATCA 95 0.0 44.20787 56 CGGTTGT 40 4.5794266E-5 43.74737 46 GTAGTGT 40 4.5794266E-5 43.74737 33 CCGACTA 75 7.4942363E-10 41.99748 21 TCGGTGG 150 0.0 41.99748 45 >>END_MODULE