SRR1779714_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779714_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	194465
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	19727	10.144241894428303	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2451	1.26038104543234	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	1434	0.7374077597511121	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	867	0.445838582778392	RNA PCR Primer, Index 42 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	665	0.3419638495359062	No Hit
CTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	557	0.28642686344586427	RNA PCR Primer, Index 32 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	370	0.1902656004936621	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGACCTCGTATGCCGT	226	0.11621628570693955	No Hit
TTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	218	0.11210243488545496	RNA PCR Primer, Index 32 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	213	0.10953127812202709	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGT	15	0.0022221182	70.0	58
TTGCGTC	15	0.0022221182	70.0	4
CTAATCG	15	0.0022221182	70.0	17
GTCTAGG	30	8.354047E-6	58.333332	1
ATTCGAT	20	0.006943398	52.5	32
CGGTGTT	20	0.006943398	52.5	37
CGTAATA	20	0.006943398	52.5	62
ACGTAAT	20	0.006943398	52.5	61
ATGCCGT	2785	0.0	51.02334	44
CGTATGC	2795	0.0	50.96601	41
TCGTATG	2800	0.0	50.875	40
TATGCCG	2795	0.0	50.840786	43
CTCGTAT	2785	0.0	50.77199	39
GCCGTCT	2800	0.0	50.75	46
TCTTCTG	2815	0.0	50.72824	50
GTATGCC	2810	0.0	50.69395	42
CTGCTTG	2775	0.0	50.576576	54
GCTTGAA	2755	0.0	50.562614	56
TGCTTGA	2775	0.0	50.450447	55
CCGTCTT	2810	0.0	50.444843	47