##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779713_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 149971 Sequences flagged as poor quality 0 Sequence length 76 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.289382613972034 33.0 23.0 34.0 12.0 34.0 2 27.13270565642691 32.0 23.0 34.0 12.0 34.0 3 26.195131058671343 32.0 21.0 34.0 11.0 34.0 4 28.105660427682686 33.0 23.0 34.0 12.0 34.0 5 27.783271432476944 33.0 23.0 34.0 11.0 34.0 6 29.781637783304774 35.0 23.0 38.0 11.0 38.0 7 30.895479792759932 36.0 26.0 38.0 12.0 38.0 8 30.081055670763014 36.0 24.0 38.0 11.0 38.0 9 31.59493502077068 37.0 27.0 38.0 12.0 38.0 10-11 31.11251508625001 37.0 26.5 38.0 11.0 38.0 12-13 30.449363543618432 35.5 25.0 38.0 11.0 38.0 14-15 30.179984797060765 35.0 24.5 38.0 11.0 38.0 16-17 29.90471824552747 35.5 24.0 38.0 11.0 38.0 18-19 30.463119536443713 36.0 25.0 38.0 11.0 38.0 20-21 29.35331164025045 35.0 23.5 38.0 11.0 38.0 22-23 29.382657313747323 34.5 23.5 37.5 11.0 38.0 24-25 30.38816504524208 35.5 24.5 38.0 11.0 38.0 26-27 29.06907335418181 34.0 22.0 38.0 11.0 38.0 28-29 30.95708503644038 36.5 26.0 38.0 11.0 38.0 30-31 31.41198631735469 37.0 26.5 38.0 11.0 38.0 32-33 31.55796453981103 37.0 27.0 38.0 11.0 38.0 34-35 31.59609857905862 37.0 27.0 38.0 11.0 38.0 36-37 29.622973774929818 35.0 23.5 38.0 11.0 38.0 38-39 28.148075294556946 33.5 21.0 37.0 11.0 38.0 40-41 29.076851524628097 34.0 22.0 37.5 11.0 38.0 42-43 30.049826299751288 35.0 24.0 38.0 11.0 38.0 44-45 31.600459422154948 37.0 27.0 38.0 11.0 38.0 46-47 30.267451707330082 35.5 24.0 38.0 11.0 38.0 48-49 29.598752425468923 35.0 23.5 38.0 11.0 38.0 50-51 27.63170212907829 32.5 21.0 37.0 11.0 38.0 52-53 30.675130525234877 36.0 25.0 38.0 11.0 38.0 54-55 29.83171746537664 35.5 23.5 38.0 11.0 38.0 56-57 30.25206206533263 35.5 24.5 38.0 11.0 38.0 58-59 31.250448420027872 37.0 26.5 38.0 11.0 38.0 60-61 31.759123430529904 37.0 27.0 38.0 11.0 38.0 62-63 31.66559201445613 37.0 27.5 38.0 11.0 38.0 64-65 31.368277867054296 37.0 26.5 38.0 11.0 38.0 66-67 29.45752178754559 34.5 22.5 38.0 11.0 38.0 68-69 29.46732034860073 34.5 23.0 38.0 11.0 38.0 70-71 29.075334564682507 34.0 22.0 38.0 11.0 38.0 72-73 27.955698101632983 33.0 21.0 37.0 11.0 38.0 74-75 29.767104973628236 35.0 23.5 37.5 11.0 38.0 76 30.03149275526602 36.0 24.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 5.0 4 1.0 5 0.0 6 1.0 7 1.0 8 1.0 9 1.0 10 1.0 11 10.0 12 58.0 13 369.0 14 1004.0 15 1844.0 16 2846.0 17 4481.0 18 5551.0 19 5812.0 20 5234.0 21 4006.0 22 3266.0 23 2764.0 24 2551.0 25 2434.0 26 2831.0 27 3093.0 28 3629.0 29 4409.0 30 5251.0 31 6441.0 32 8265.0 33 10761.0 34 14337.0 35 18346.0 36 19847.0 37 10520.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.49696941408673 16.519193710784087 12.121676857525788 31.8621600176034 2 20.61731934840736 15.713704649565582 39.088890518833644 24.580085483193418 3 21.334933653397346 15.105021004200841 36.59065146362606 26.969393878775755 4 16.50985857265738 18.14750851831354 26.9405418380887 38.40209107094038 5 17.0399610591381 25.616285815257616 36.992485213808 20.35126791179628 6 30.785951950710473 29.425022170953053 15.397643544418587 24.391382333917893 7 28.314140733875213 22.420334598022286 17.42003454001107 31.84549012809143 8 23.843563498149567 30.388423965591972 17.306038075550962 28.461974460707502 9 22.364551728736707 13.951255292901676 18.274930817190675 45.409262161170936 10-11 28.046438431069205 20.52186553926995 23.87671543457676 27.55498059508409 12-13 25.386008021898515 15.801072920591205 27.20843933064159 31.604479726868696 14-15 26.99638914543109 18.87079942253 20.528525084269944 33.604286347768976 16-17 28.52146253309238 18.716115738301802 22.353776698964385 30.408645029641434 18-19 25.052513653549923 17.959002674028582 24.683084268576497 32.305399403844994 20-21 28.03730216151156 17.97558755572152 23.514565113743586 30.472545169023334 22-23 28.6803612927318 17.165072368574602 23.381334542532585 30.773231796161017 24-25 25.968492123030757 20.816870884387765 19.265483037426023 33.94915395515545 26-27 27.3532314422128 20.095822997519406 23.0975434104185 29.453402149849296 28-29 26.90770148935248 20.41416468564227 21.519426264215866 31.158707560789388 30-31 26.117703543909602 20.111161864878653 22.218702800385433 31.55243179082631 32-33 26.69431765517839 19.63964805003851 22.437643575646234 31.22839071913686 34-35 26.43000986903524 19.7820810327812 22.07563148488971 31.712277613293853 36-37 27.838904781909964 16.676335847320303 27.35111128893512 28.13364808183461 38-39 26.930425011919805 15.89985362812207 31.464619016340972 25.705102343617153 40-41 26.634680465856007 20.45305263719446 22.121825414025693 30.790441482923836 42-43 23.50681825759344 20.717167339045776 24.17964191644717 31.596372486913616 44-45 23.151787946986747 18.326581645411352 26.684671167791947 31.836959239809953 46-47 26.422781847340815 17.425805956862263 26.51447204782561 29.636940147971313 48-49 26.4970658842358 17.937116564417177 26.97919445185383 28.586623099493195 50-51 29.038022965818005 16.794587962283778 28.09845160774063 26.06893746415759 52-53 22.446836177406126 19.772140756596716 26.72061402631351 31.060409039683652 54-55 25.364684229303442 18.703507970538517 25.218977250372603 30.71283054978544 56-57 25.285486134959505 19.283025536213813 24.534303347147805 30.897184981678876 58-59 22.625366764470524 20.685516137636704 25.510136036276343 31.17898106161643 60-61 22.917805844147185 19.429255411370878 25.13936864005548 32.51357010442646 62-63 22.462765443130404 20.78833567282269 25.04676200224724 31.702136881799664 64-65 22.899572229242448 21.367866180770655 24.454617290207285 31.277944299779612 66-67 21.79155038527069 24.71433953834202 20.05308099853627 33.44102907785102 68-69 21.783254681585486 24.94688922610015 20.52960696359786 32.740249128716506 70-71 22.121639509334187 25.251151144142252 19.948052640879705 32.679156705643855 72-73 21.196915187666086 25.920492396331035 19.441786337068763 33.44080607893412 74-75 23.14529868934774 23.597408702784346 22.783210581241438 30.47408202662648 76 23.831529531011398 22.443835397203273 22.97397323304059 30.75066183874474 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 1.0 3 2.0 4 2.0 5 1.5 6 1.0 7 0.5 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 0.5 14 0.0 15 1.0 16 4.0 17 6.0 18 6.5 19 12.5 20 25.0 21 32.0 22 47.5 23 79.0 24 114.5 25 134.0 26 198.0 27 294.0 28 425.0 29 524.0 30 625.0 31 812.5 32 1001.0 33 1103.0 34 1273.5 35 1623.0 36 2003.5 37 2205.0 38 2424.0 39 2860.0 40 3305.5 41 3690.5 42 3847.0 43 4003.5 44 4294.5 45 4536.0 46 4643.0 47 4641.0 48 4693.5 49 4701.5 50 4655.0 51 4676.0 52 4828.0 53 5042.5 54 5126.0 55 5323.0 56 5662.0 57 5926.0 58 6048.0 59 6174.5 60 6361.5 61 6530.0 62 6638.0 63 6488.5 64 6220.0 65 5921.0 66 5505.0 67 5269.0 68 5017.5 69 4465.0 70 3863.5 71 3563.0 72 3274.0 73 2717.0 74 2203.5 75 1958.0 76 1774.0 77 1385.0 78 1018.0 79 856.0 80 738.5 81 499.5 82 299.5 83 221.0 84 168.0 85 91.0 86 50.0 87 33.0 88 24.0 89 11.0 90 4.0 91 1.5 92 2.0 93 2.0 94 1.0 95 0.0 96 0.0 97 0.0 98 0.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 6.667955804788926E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.004000773482873355 9 0.004000773482873355 10-11 0.006001160224310033 12-13 0.004334171273112802 14-15 0.004334171273112802 16-17 0.00800154696574671 18-19 0.006667955804788926 20-21 0.004334171273112802 22-23 0.006334558014549479 24-25 0.005667762434070587 26-27 0.004667569063352248 28-29 0.004334171273112802 30-31 0.006334558014549479 32-33 0.004334171273112802 34-35 0.004667569063352248 36-37 0.006667955804788926 38-39 0.007001353595028373 40-41 0.007001353595028373 42-43 0.004000773482873355 44-45 0.005667762434070587 46-47 0.006334558014549479 48-49 0.007334751385267818 50-51 0.006001160224310033 52-53 0.006667955804788926 54-55 0.008334944755986158 56-57 0.005000966853591694 58-59 0.007334751385267818 60-61 0.006001160224310033 62-63 0.006334558014549479 64-65 0.005000966853591694 66-67 0.007668149175507265 68-69 0.03233958565322629 70-71 0.007668149175507265 72-73 0.007001353595028373 74-75 0.005000966853591694 76 0.006667955804788926 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 149971.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.87716340281305 #Duplication Level Percentage of deduplicated Percentage of total 1 97.22711384409133 94.19086995057943 2 2.4016096408458956 4.65322259211998 3 0.31491841198713805 0.9152520736989711 4 0.042356722393898996 0.16413596466245375 5 0.010009445817357956 0.048484335900989516 6 0.001997044403300106 0.011608079818870659 7 0.0 0.0 8 9.974862721079487E-4 0.007730691246005167 9 9.974041889569613E-4 0.00869631197330104 >10 0.0 0.0 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.007334751385267818 0.0 2 0.0 0.0 0.0 0.008001546965746712 0.0 3 0.0 0.0 0.0 0.008668342546225604 0.0 4 0.0 0.0 0.0 0.012669116029098959 0.0 5 0.0 0.0 0.0 0.013335911609577852 0.0 6 0.0 0.0 0.0 0.013335911609577852 0.0 7 0.0 0.0 0.0 0.014002707190056744 0.0 8 0.0 0.0 0.0 0.014002707190056744 0.0 9 0.0 0.0 0.0 0.014669502770535636 0.0 10 0.0 0.0 0.0 0.016003093931493424 0.0 11 0.0 0.0 0.0 0.016669889511972315 0.0 12 0.0 0.0 0.0 0.017336685092451207 6.667955804788926E-4 13 0.0 0.0 0.0 0.017336685092451207 6.667955804788926E-4 14 0.0 0.0 0.0 0.017336685092451207 6.667955804788926E-4 15 0.0 0.0 0.0 0.017336685092451207 6.667955804788926E-4 16 0.0 0.0 0.0 0.019337071833887887 6.667955804788926E-4 17 0.0 0.0 0.0 0.02067066299484567 6.667955804788926E-4 18 0.0 0.0 0.0 0.022671049736282346 6.667955804788926E-4 19 0.0 0.0 0.0 0.024671436477719026 6.667955804788926E-4 20 0.0 0.0 0.0 0.026671823219155705 6.667955804788926E-4 21 0.0 0.0 0.0 0.03267298344346574 6.667955804788926E-4 22 0.0 0.0 0.0 0.0446753038920858 6.667955804788926E-4 23 0.0 0.0 0.0 0.04600889505304359 6.667955804788926E-4 24 0.0 0.0 0.0013335911609577852 0.05334364643831141 6.667955804788926E-4 25 0.0 0.0 0.0013335911609577852 0.058678011082142545 6.667955804788926E-4 26 0.0 0.0 0.0013335911609577852 0.06134519340405812 6.667955804788926E-4 27 0.0 0.0 0.0013335911609577852 0.10668729287662282 6.667955804788926E-4 28 0.0 0.0 0.0013335911609577852 0.1546965746711031 6.667955804788926E-4 29 0.0 0.0 0.0013335911609577852 0.19603790066079443 6.667955804788926E-4 30 0.0 0.0 0.0013335911609577852 0.24471397803575357 6.667955804788926E-4 31 0.0 0.0 0.0013335911609577852 0.26405104986964145 6.667955804788926E-4 32 0.0 0.0 0.0013335911609577852 0.3260630388541785 6.667955804788926E-4 33 0.0 0.0 0.0013335911609577852 0.3980769615458989 6.667955804788926E-4 34 0.0 0.0 0.0013335911609577852 0.5167665748711417 6.667955804788926E-4 35 0.0 0.0 0.0013335911609577852 0.7528122103606697 6.667955804788926E-4 36 0.0 0.0 0.0013335911609577852 0.9448493375385908 6.667955804788926E-4 37 0.0 0.0 0.0013335911609577852 1.4002707190056745 6.667955804788926E-4 38 0.0 0.0 0.0013335911609577852 1.8290202772536024 6.667955804788926E-4 39 0.0 0.0 0.0013335911609577852 2.2984443659107425 6.667955804788926E-4 40 0.0 0.0 0.0013335911609577852 2.7785371838555455 6.667955804788926E-4 41 0.0 0.0 0.0013335911609577852 3.244627294610291 6.667955804788926E-4 42 0.0 0.0 0.0013335911609577852 3.7460575711304185 6.667955804788926E-4 43 0.0 0.0 0.0013335911609577852 4.248154643231024 6.667955804788926E-4 44 0.0 0.0 0.0013335911609577852 4.758920057877856 6.667955804788926E-4 45 0.0 0.0 0.0013335911609577852 5.15432983710184 6.667955804788926E-4 46 0.0 0.0 0.0013335911609577852 5.649758953397657 6.667955804788926E-4 47 0.0 0.0 0.002000386741436678 6.16585873268832 6.667955804788926E-4 48 0.0 0.0 0.002000386741436678 6.535263484273626 6.667955804788926E-4 49 0.0 0.0 0.002000386741436678 6.885331164025045 6.667955804788926E-4 50 0.0 0.0 0.002000386741436678 7.375425915677031 6.667955804788926E-4 51 0.0 0.0 0.002000386741436678 7.874855805455722 6.667955804788926E-4 52 0.0 0.0 0.002000386741436678 8.288269065352635 0.0013335911609577852 53 0.0 0.0 0.002000386741436678 8.751691993785466 0.0013335911609577852 54 0.0 0.0 0.002000386741436678 9.241786745437452 0.0013335911609577852 55 0.0 0.0 0.002000386741436678 9.58518646938408 0.0013335911609577852 56 0.0 0.0 0.002000386741436678 9.964593154676571 0.0013335911609577852 57 0.0 0.0 0.002000386741436678 10.298657740496497 0.0013335911609577852 58 0.0 0.0 0.002000386741436678 10.605383707516786 0.0013335911609577852 59 0.0 0.0 0.002000386741436678 10.964119729814431 0.0013335911609577852 60 0.0 0.0 0.002000386741436678 11.1641584039581 0.0013335911609577852 61 0.0 0.0 0.002000386741436678 11.384200945516133 0.0013335911609577852 62 0.0 0.0 0.002000386741436678 11.520894039514307 0.0013335911609577852 63 0.0 0.0 0.002000386741436678 11.727600669462763 0.0013335911609577852 64 0.0 0.0 0.002000386741436678 11.934974094991698 0.0013335911609577852 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACACT 20 7.908804E-5 69.99532 38 GTATCAC 30 8.348055E-6 58.32944 57 CTACGAA 45 2.6839189E-8 54.440815 22 TGCCTAC 90 0.0 54.440815 19 AGTCCAT 20 0.0069421446 52.496494 21 AATTTGG 20 0.0069421446 52.496494 42 CGTACCC 20 0.0069421446 52.496494 56 CGTGTAT 20 0.0069421446 52.496494 35 TAGATCT 155 0.0 51.93202 39 CGTATCA 115 0.0 48.692406 56 GTATCAT 115 0.0 48.692406 57 TTTAGTC 30 5.8649E-4 46.663555 18 TCGGAGT 30 5.8649E-4 46.663555 31 AGGTGGT 75 1.4551915E-11 46.66355 46 AGATCTC 175 0.0 45.996933 40 TATCATT 145 0.0 45.85901 58 TCGGTGG 210 0.0 44.996998 45 TCTCGGT 235 0.0 44.677868 43 CATTAAA 110 0.0 44.542484 61 ATCATTA 110 0.0 44.542484 59 >>END_MODULE