##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779713_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 149971 Sequences flagged as poor quality 0 Sequence length 76 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.59180774949824 34.0 34.0 34.0 34.0 34.0 2 33.62200692133813 34.0 34.0 34.0 34.0 34.0 3 33.62194690973588 34.0 34.0 34.0 34.0 34.0 4 33.6673623567223 34.0 34.0 34.0 34.0 34.0 5 33.67315681031666 34.0 34.0 34.0 34.0 34.0 6 37.26688493108668 38.0 38.0 38.0 36.0 38.0 7 37.266698228324145 38.0 38.0 38.0 36.0 38.0 8 37.13383254095792 38.0 38.0 38.0 36.0 38.0 9 37.14386781444413 38.0 38.0 38.0 36.0 38.0 10-11 37.06093511412206 38.0 38.0 38.0 35.5 38.0 12-13 37.03405991825086 38.0 38.0 38.0 35.5 38.0 14-15 37.058277933733855 38.0 38.0 38.0 35.5 38.0 16-17 36.9901214234752 38.0 38.0 38.0 35.0 38.0 18-19 36.983833541151284 38.0 38.0 38.0 35.0 38.0 20-21 37.035333497809575 38.0 38.0 38.0 35.0 38.0 22-23 36.976715498329675 38.0 38.0 38.0 35.0 38.0 24-25 36.944439258256594 38.0 38.0 38.0 35.0 38.0 26-27 36.80466556867661 38.0 37.5 38.0 34.5 38.0 28-29 36.6931173360183 38.0 37.0 38.0 34.0 38.0 30-31 36.521767541724735 38.0 37.0 38.0 34.0 38.0 32-33 36.44217882123877 38.0 37.0 38.0 34.0 38.0 34-35 36.394606290549504 38.0 37.0 38.0 34.0 38.0 36-37 36.511165491995115 38.0 37.0 38.0 34.0 38.0 38-39 36.204072787405565 38.0 37.0 38.0 34.0 38.0 40-41 36.57267071633849 38.0 37.0 38.0 34.0 38.0 42-43 36.747034426655816 38.0 37.0 38.0 34.0 38.0 44-45 36.7095538470771 38.0 37.0 38.0 34.0 38.0 46-47 36.73999306532596 38.0 37.0 38.0 34.0 38.0 48-49 36.71646851724667 38.0 37.0 38.0 34.0 38.0 50-51 36.630371871895235 38.0 37.0 38.0 34.0 38.0 52-53 36.6161191163625 38.0 37.0 38.0 34.0 38.0 54-55 36.61588573790933 38.0 37.0 38.0 34.0 38.0 56-57 36.625117522721055 38.0 37.0 38.0 34.0 38.0 58-59 36.523534550013004 38.0 37.0 38.0 34.0 38.0 60-61 36.58006881330391 38.0 37.0 38.0 34.0 38.0 62-63 36.5757479779424 38.0 37.0 38.0 34.0 38.0 64-65 36.62140347133779 38.0 37.0 38.0 34.0 38.0 66-67 36.53221622847084 38.0 37.0 38.0 34.0 38.0 68-69 36.31588440431817 38.0 37.0 38.0 34.0 38.0 70-71 34.87514586153323 38.0 35.5 38.0 27.0 38.0 72-73 32.58068559921585 38.0 31.0 38.0 11.0 38.0 74-75 32.29339672336651 38.0 29.5 38.0 11.0 38.0 76 31.84068253195618 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 4.0 21 12.0 22 15.0 23 36.0 24 62.0 25 141.0 26 244.0 27 424.0 28 745.0 29 1195.0 30 1876.0 31 2806.0 32 4291.0 33 6437.0 34 10620.0 35 21226.0 36 26291.0 37 73546.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.618219522441 13.687312880490229 10.504697574864474 40.18977002220429 2 19.111028132105538 14.195411112815146 42.16348494042181 24.5300758146575 3 19.341739402951237 14.819531776143387 38.78349814297431 27.055230677931068 4 14.96889398617066 27.742696921404804 26.17039294263558 31.118016149788957 5 15.989758019883842 26.285748578058428 41.00526101712998 16.71923238492775 6 29.997132779003945 40.104420187902996 13.63196884731048 16.266478185782585 7 26.454447859919583 22.004920951383937 14.628161444545945 36.912469744150535 8 23.13847343819805 41.41200632122211 13.72732061531896 21.722199625260885 9 20.574644431256708 13.376586139987065 13.953364317101306 52.09540511165493 10-11 26.014696174593755 25.578945262750796 24.548746090910907 23.857612471744538 12-13 24.266024764787858 13.805335698234991 26.629481699795292 35.29915783718185 14-15 23.451867361023133 13.838342079468696 15.675697301478287 47.034093258029884 16-17 34.09959258790033 24.382047195791188 14.4147868587927 27.103573357515785 18-19 34.58268598595728 17.505050976522128 14.706509925252215 33.20575311226837 20-21 24.487067499716613 15.730041141287316 14.84153603029919 44.94135532869688 22-23 24.649432223563224 25.093518080162163 14.684839068886651 35.57221062738796 24-25 34.16393836141654 25.081515759713547 14.540144427922733 26.214401450947182 26-27 33.94289562648779 26.661487887658282 15.54067119643131 23.85494528942262 28-29 24.453060925112187 27.009221782878022 15.635022771069075 32.90269452094072 30-31 23.848610731408073 26.19273059458162 25.200538770829027 24.75811990318128 32-33 31.879163304905617 27.64301098212321 17.162984843736456 23.314840869234718 34-35 25.50493095331764 16.956278213787996 34.5286755439385 23.010115288955866 36-37 23.069460095618485 33.149408885717904 19.613791999786624 24.167339018876984 38-39 22.69438758159911 18.02115075581279 26.4317768101833 32.8526848524048 40-41 22.86875462589434 14.889211914303432 27.878056424242022 34.363977035560204 42-43 32.36492388528448 14.636162991511693 27.00655460055611 25.992358522647713 44-45 22.654379846770375 24.361376532796342 29.026611811616913 23.95763180881637 46-47 31.14835534870075 15.87040161097812 20.4612891825753 32.51995385774583 48-49 30.68493242026792 14.90254782591301 18.646271612511754 35.76624814130732 50-51 22.093938161377867 15.523667909129099 28.49784291629715 33.88455101319588 52-53 19.946522994445594 15.759713544618625 38.06369231384734 26.230071147088434 54-55 20.124557414433458 15.357969207380092 30.380206839989064 34.13726653819739 56-57 29.386348027285276 15.559008074894479 20.90037407232065 34.1542698254996 58-59 21.40980589580652 16.378499843303036 35.96828720219242 26.243407058698015 60-61 29.518373552220094 25.927012555760783 19.823832607637478 24.73078128438165 62-63 20.3142607570797 37.91666388835175 16.67955804788926 25.089517306679294 64-65 19.61212501083543 39.526308419627796 15.942082135879604 24.919484433657175 66-67 20.331930839962393 39.453961099145836 15.53400324062652 24.68010482026525 68-69 19.81516426509125 40.11142154149802 15.574344373245493 24.499069820165232 70-71 19.903514679504706 38.48477372291976 16.158790699535245 25.452920898040286 72-73 20.316261143821137 33.90955584746384 17.952137413233224 27.822045595481793 74-75 20.64065719372412 31.57377092904628 19.45909542511552 28.326476452114075 76 20.539304265491328 31.956844990031406 19.460429016276482 28.043421728200784 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 1.5 16 5.5 17 9.0 18 11.5 19 18.0 20 29.0 21 36.0 22 45.0 23 74.5 24 109.0 25 123.0 26 134.0 27 227.0 28 324.5 29 340.0 30 396.0 31 501.0 32 666.0 33 782.0 34 859.0 35 1215.5 36 6138.5 37 10782.0 38 11395.0 39 10713.0 40 7827.5 41 5138.0 42 4039.0 43 3353.5 44 2558.0 45 2532.5 46 2617.0 47 2516.0 48 2395.0 49 2386.0 50 2397.0 51 2481.0 52 2694.5 53 3031.0 54 3238.0 55 3435.5 56 3826.0 57 4277.0 58 4535.0 59 4725.0 60 5122.5 61 5461.0 62 5592.0 63 5599.0 64 5480.5 65 5395.5 66 5360.5 67 5285.0 68 4970.5 69 4436.0 70 4008.5 71 3801.0 72 3605.5 73 3171.0 74 2708.5 75 2485.0 76 2254.0 77 1780.0 78 1369.5 79 1202.0 80 1087.0 81 824.0 82 541.0 83 406.0 84 346.5 85 204.0 86 103.5 87 86.0 88 61.0 89 25.0 90 8.5 91 3.5 92 4.0 93 2.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 149971.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.66958278600529 #Duplication Level Percentage of deduplicated Percentage of total 1 53.194149268658585 22.697721559501506 2 25.959494936867106 22.15361636583073 3 12.31091386423303 15.759046749038147 4 5.136579572446555 8.767028292136478 5 1.908051006375797 4.070787018823639 6 0.7829103637954745 2.0043875149195514 7 0.31410176272034007 0.938181381733802 8 0.14220527565945743 0.48542718258863377 9 0.05156894611826478 0.1980382874022311 >10 0.16564570571321416 1.18022817744764 >50 0.012501562695336917 0.4387514919551114 >100 0.012501562695336917 1.197564862540091 >500 0.0031253906738342293 0.9101759673536883 >1k 0.004688086010751344 3.6467050296390635 >5k 0.0 0.0 >10k+ 0.0015626953369171147 15.552340119089692 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT 23324 15.552340119089692 No Hit TCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 2700 1.80034806729301 No Hit CTCTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 1745 1.1635582879356676 No Hit ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 1024 0.682798674410386 RNA PCR Primer, Index 15 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 760 0.5067646411639584 No Hit CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 605 0.40341132618973 No Hit CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 348 0.23204486200665464 No Hit CTTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 260 0.17336685092451207 No Hit TTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC 249 0.16603209953924425 No Hit TCTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCC 236 0.15736375699301866 No Hit CTTAATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCG 216 0.1440278453834408 No Hit TATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCT 187 0.12469077354955291 No Hit CTTATACACATCTCCGAGCCCACGAGACATAAGTTAACCTCGTATGCCGT 165 0.11002127077901727 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.010668729287662281 0.0 2 0.0 0.0 0.0 0.012002320448620067 0.0 3 0.0 0.0 0.0 0.014002707190056744 0.0 4 0.0 0.0 0.0 0.02067066299484567 0.0 5 0.0 0.0 0.0 0.024004640897240134 0.0 6 0.0 0.0 0.0 0.024004640897240134 0.0 7 0.0 0.0 0.0 0.024671436477719026 0.0 8 0.0 0.0 0.0 0.02600502763867681 0.0 9 0.0 0.0 0.0 0.02800541438011349 0.0 10 0.0 0.0 0.0 0.029339005541071272 0.0 11 0.0 0.0 0.0 0.030005801121550168 0.0 12 0.0 0.0 0.0 0.03067259670202906 0.0 13 0.0 0.0 0.0 0.03067259670202906 0.0 14 0.0 0.0 0.0 0.03067259670202906 0.0 15 0.0 0.0 0.0 0.03133939228250795 0.0 16 0.0 0.0 0.0 0.03400657460442352 0.0 17 0.0 0.0 0.0 0.034673370184902415 0.0 18 0.0 0.0 0.0 0.038007348087296874 0.0 19 0.0 0.0 0.0 0.04000773482873356 0.0 20 0.0 0.0 0.0 0.04334171273112802 0.0 21 0.0 0.0 0.0 0.047342486214001375 0.0 22 0.0 0.0 0.0 0.05000966853591694 0.0 23 0.0 0.0 0.0 0.05201005527735362 0.0 24 0.0 0.0 0.0 0.05734441992118476 0.0 25 0.0 0.0 0.0 0.06467917130645258 0.0 26 0.0 0.0 0.0 0.06867994478932593 0.0 27 0.0 0.0 0.0 0.12402397796907402 0.0 28 0.0 0.0 0.0 0.19870508298271 0.0 29 0.0 0.0 0.0 0.2813877349620927 0.0 30 0.0 0.0 0.0 0.3440665195271086 0.0 31 0.0 0.0 0.0 0.41941442012122343 0.0 32 0.0 0.0 0.0 0.5221009395149729 0.0 33 0.0 0.0 0.0 0.652126077708357 0.0 34 0.0 0.0 0.0 0.9301798347680551 0.0 35 0.0 0.0 0.0 1.2962506084509673 0.0 36 0.0 0.0 0.0 1.8276866860926446 0.0 37 0.0 0.0 0.0 2.5224876809516505 0.0 38 0.0 0.0 0.0 3.264631162024658 0.0 39 0.0 0.0 0.0 3.9887711624247353 0.0 40 0.0 0.0 0.0 4.685572544025178 0.0 41 0.0 0.0 0.0 5.331030665928746 0.0 42 0.0 0.0 0.0 6.074507738162711 0.0 43 0.0 0.0 0.0 6.799981329723747 0.0 44 0.0 0.0 0.0 7.518120169899514 0.0 45 0.0 0.0 0.0 8.338278733888552 0.0 46 0.0 0.0 0.0 9.208446966413506 0.0 47 0.0 0.0 0.0 9.929919784491668 0.0 48 0.0 0.0 0.0 10.63272232631642 0.0 49 0.0 0.0 0.0 11.310853431663455 0.0 50 0.0 0.0 0.0 11.93430729941122 0.0 51 0.0 0.0 0.0 12.533089730681265 0.0 52 0.0 0.0 0.0 13.131205366370832 0.0 53 0.0 0.0 0.0 13.630635256149523 0.0 54 0.0 0.0 0.0 14.178741223303172 0.0 55 0.0 0.0 0.0 14.735515533003047 0.0 56 0.0 0.0 0.0 15.312960505697768 0.0 57 0.0 0.0 0.0 15.87773636236339 0.0 58 0.0 0.0 0.0 16.459182108540986 0.0 59 0.0 0.0 0.0 16.976615478992606 0.0 60 0.0 0.0 0.0 17.415366970947716 0.0 61 0.0 0.0 0.0 17.882790672863422 0.0 62 0.0 0.0 0.0 18.296203932760335 0.0 63 0.0 0.0 0.0 18.77829713744657 0.0 64 0.0 0.0 0.0 19.26772509351808 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACTCG 15 0.0022211228 70.00001 6 TCTTTAT 110 0.0 57.272724 1 CCCCTTG 20 0.006940313 52.5 19 AAGACAG 20 0.006940313 52.5 54 TATAGGG 20 0.006940313 52.5 5 GCTAATC 20 0.006940313 52.5 33 TCTATAG 20 0.006940313 52.5 3 CTATACA 115 0.0 51.73913 1 GTATGCC 3380 0.0 48.15089 42 CGTATGC 3405 0.0 48.105724 41 TCGTATG 3405 0.0 48.105724 40 CTCGTAT 3375 0.0 48.014816 39 TCTCGTA 3305 0.0 47.972767 38 TTGAAAA 3400 0.0 47.97059 58 TCTTCTG 3365 0.0 47.949482 50 CTTGAAA 3410 0.0 47.932552 57 AATCTCG 3255 0.0 47.84946 36 CCGTCTT 3365 0.0 47.84547 47 TGCTTGA 3410 0.0 47.829914 55 GTCTTCT 3385 0.0 47.76957 49 >>END_MODULE