##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779712_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 163079 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.48651880376995 34.0 27.0 34.0 12.0 34.0 2 27.989833148351412 34.0 23.0 34.0 12.0 34.0 3 26.94140876507705 32.0 21.0 34.0 11.0 34.0 4 29.23040366938723 34.0 23.0 34.0 12.0 34.0 5 28.87668553277859 34.0 23.0 34.0 11.0 34.0 6 31.20898460255459 37.0 27.0 38.0 11.0 38.0 7 32.235352191269264 37.0 31.0 38.0 12.0 38.0 8 31.460145083057906 37.0 27.0 38.0 11.0 38.0 9 32.85147689156789 37.0 32.0 38.0 12.0 38.0 10-11 32.57937257402854 37.0 31.0 38.0 11.0 38.0 12-13 31.595104213295393 37.0 29.0 38.0 11.0 38.0 14-15 31.625515854279215 36.5 29.0 38.0 11.5 38.0 16-17 31.277991035019838 36.5 27.5 38.0 11.0 38.0 18-19 31.89135020450211 37.0 29.0 38.0 11.5 38.0 20-21 30.77485758436095 35.5 27.0 38.0 11.0 38.0 22-23 30.774011368723137 35.5 26.5 38.0 11.0 38.0 24-25 31.961031156678665 36.5 29.0 38.0 11.0 38.0 26-27 30.53625850048136 36.5 25.0 38.0 11.0 38.0 28-29 32.60881229342834 37.0 31.5 38.0 11.0 38.0 30-31 33.061703223591024 38.0 34.0 38.0 11.0 38.0 32-33 33.152266692829855 38.0 34.0 38.0 11.0 38.0 34-35 33.21490811201933 38.0 34.0 38.0 11.0 38.0 36-37 31.14092249768517 36.5 27.5 38.0 11.0 38.0 38-39 29.418205287008135 34.5 23.0 37.5 11.0 38.0 40-41 30.58660219893426 35.0 26.0 38.0 11.0 38.0 42-43 31.642498421010675 36.5 28.5 38.0 11.0 38.0 44-45 33.22604381925325 37.5 34.0 38.0 21.0 38.0 46-47 31.82241735600537 37.0 29.0 38.0 15.5 38.0 48-49 31.28562537175234 36.5 27.5 38.0 11.0 38.0 50-51 29.130280416239984 34.0 22.5 37.5 11.0 38.0 52-53 32.453712617811 37.0 32.5 38.0 11.0 38.0 54-55 31.521324020873323 36.5 28.0 38.0 11.0 38.0 56-57 31.91379331489646 37.0 29.5 38.0 11.0 38.0 58-59 33.016921246757704 37.0 34.0 38.0 11.0 38.0 60-61 33.4606969628217 38.0 34.0 38.0 21.0 38.0 62-63 33.3296193869229 38.0 34.0 38.0 16.0 38.0 64-65 33.043696613297854 38.0 33.0 38.0 15.5 38.0 66-67 31.018766977967736 36.5 25.5 38.0 11.0 38.0 68-69 31.09014955941599 36.5 26.0 38.0 11.0 38.0 70-71 30.684821466896413 36.5 25.5 38.0 11.0 38.0 72-73 29.489011460703097 34.5 23.5 38.0 11.0 38.0 74-75 31.622784049448427 36.5 28.0 38.0 11.0 38.0 76 32.03348070567026 37.0 31.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 4 2.0 5 0.0 6 0.0 7 0.0 8 1.0 9 1.0 10 1.0 11 10.0 12 43.0 13 239.0 14 677.0 15 1222.0 16 1965.0 17 3032.0 18 3971.0 19 4215.0 20 3770.0 21 3086.0 22 2557.0 23 2271.0 24 2276.0 25 2371.0 26 2646.0 27 3088.0 28 3671.0 29 4537.0 30 5510.0 31 7093.0 32 9302.0 33 12561.0 34 17215.0 35 23122.0 36 26995.0 37 15629.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.6336806087847 17.69878402492044 11.039434875121874 30.628100491172987 2 21.15784374444288 16.714598446151864 38.39856756541308 23.728990243992175 3 20.607803579860068 17.568172480822177 36.00463579001588 25.81938814930187 4 14.550616572336105 18.978531877188356 32.70684760146922 33.76400394900631 5 14.921602413554167 29.163779517902366 38.53408470741175 17.38053336113172 6 28.093745975876722 32.42048332403314 17.046952703904243 22.438817996185897 7 27.708656540695 26.554001434887386 19.97620785018304 25.761134174234574 8 23.87829062344782 32.14493766748223 17.730274655530824 26.246497053539127 9 23.765460487990335 16.463388460665822 19.157821151971156 40.613329899372694 10-11 25.02920462245552 23.693917160053594 26.66987585352617 24.607002363964714 12-13 24.61704502250512 20.11694077535352 28.27121429535058 26.994799906790785 14-15 23.657987686722755 22.327932988299935 23.836432093011847 30.177647231965466 16-17 24.862252829297756 23.022864343949394 26.04579001106883 26.069092815684016 18-19 22.45146375265217 23.068668211977382 27.613844021732465 26.86602401363798 20-21 24.215396502244353 22.75626088449557 27.16616792170522 25.862174691554856 22-23 24.91361257347147 21.67856825296569 27.700392767678377 25.707426405884465 24-25 22.67456477614869 24.74321946074554 24.19562537942199 28.386590383683778 26-27 23.575600558016895 23.5648694639052 27.186767027946836 25.672762950131073 28-29 23.5488361254875 24.64249797640364 25.930241114572343 25.878424783536513 30-31 22.881706715070198 24.593511514746417 26.26239088509169 26.26239088509169 32-33 23.310818061683463 24.65284271912531 25.885714811328565 26.150624407862665 34-35 23.432469722520313 24.263988962133986 26.082170780315806 26.22137053502989 36-37 24.00972567584555 22.055085590239983 29.763879477658843 24.171309256255615 38-39 23.915203100470958 21.088537578492936 32.771107240973315 22.22515208006279 40-41 23.549738155683922 23.155438635220822 25.632534922795784 27.662288286299468 42-43 21.1810335576643 23.49803007772378 26.96386687311248 28.35706949149944 44-45 21.365453720396875 22.565522400873224 29.07207770705324 26.99694617167666 46-47 23.109706180841506 21.66713168359635 29.685760977210084 25.537401158352065 48-49 23.042299814808 22.13228350319487 29.92598452236408 24.89943215963305 50-51 24.22451088306265 21.05142128291057 31.821652067000052 22.902415767026728 52-53 20.126813982651996 23.725804621842297 29.219646355784356 26.92773503972135 54-55 21.817395783509326 22.828899763297645 28.70138710033482 26.652317352858212 56-57 22.001465578826984 23.159211530855337 27.850596809453286 26.988726080864385 58-59 20.00723600094436 24.05663703790009 28.550316268431107 27.385810692724444 60-61 20.179612811440276 23.369901823109895 28.49153446615933 27.958950899290503 62-63 19.950819722395117 24.271264184554816 27.89141092820109 27.88650516484898 64-65 20.83526241073865 24.35175333973123 26.874526673391607 27.938457576138514 66-67 19.65192968685323 24.49860643096084 23.946391284751073 31.90307259743485 68-69 20.07679379761277 24.82181630825472 23.96064624556841 31.1407436485641 70-71 20.252834654843596 25.040933090494327 23.45113478178217 31.25509747287991 72-73 19.951249425111143 24.818948336654913 22.61658745975778 32.61321477847616 74-75 21.478592540809693 25.897445331567265 25.108233072102237 27.515729055520804 76 21.961943424110675 25.33773218129304 25.469574975624415 27.23074941897187 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.5 10 1.0 11 0.5 12 0.0 13 1.0 14 3.0 15 5.0 16 4.5 17 3.0 18 5.5 19 19.0 20 42.5 21 55.0 22 65.0 23 100.0 24 152.5 25 180.0 26 239.5 27 397.5 28 566.5 29 637.0 30 771.0 31 1107.0 32 1572.5 33 1836.0 34 2126.5 35 2826.0 36 3590.5 37 3946.0 38 4516.0 39 5734.0 40 6833.0 41 7831.5 42 8379.0 43 8598.0 44 9189.5 45 9738.5 46 9915.0 47 9842.5 48 9537.5 49 8958.0 50 8611.0 51 8135.0 52 7241.5 53 6386.0 54 5948.0 55 5606.5 56 4844.5 57 4161.0 58 3898.0 59 3624.0 60 3154.0 61 2863.5 62 2769.0 63 2647.0 64 2431.5 65 2236.0 66 2130.0 67 2126.0 68 2014.5 69 1855.5 70 1682.0 71 1556.0 72 1487.5 73 1356.0 74 1185.5 75 1078.0 76 982.5 77 806.0 78 622.0 79 519.0 80 443.0 81 301.0 82 197.0 83 159.0 84 125.0 85 78.0 86 51.0 87 37.0 88 27.0 89 13.0 90 6.5 91 3.0 92 2.0 93 2.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0012263994751010247 9 0.0012263994751010247 10-11 0.003372598556527818 12-13 0.0030659986877525614 14-15 0.0018395992126515371 16-17 0.005212197769179355 18-19 0.0030659986877525614 20-21 0.0018395992126515371 22-23 0.003372598556527818 24-25 0.0012263994751010247 26-27 9.197996063257686E-4 28-29 0.0018395992126515371 30-31 0.003372598556527818 32-33 0.0027593988189773054 34-35 0.0024527989502020494 36-37 0.003372598556527818 38-39 0.004292398162853587 40-41 0.0030659986877525614 42-43 9.197996063257686E-4 44-45 0.0030659986877525614 46-47 0.0015329993438762807 48-49 0.0030659986877525614 50-51 0.0027593988189773054 52-53 0.003372598556527818 54-55 0.0030659986877525614 56-57 0.0021461990814267934 58-59 0.003372598556527818 60-61 0.0036791984253030743 62-63 0.003372598556527818 64-65 0.0027593988189773054 66-67 0.005212197769179355 68-69 0.027593988189773058 70-71 0.004905597900404099 72-73 0.0024527989502020494 74-75 0.0030659986877525614 76 0.0036791984253030743 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 163079.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 91.60953194148671 #Duplication Level Percentage of deduplicated Percentage of total 1 94.19551763391183 86.29207281428721 2 4.110340935742451 7.530928184865969 3 0.9510836283604696 2.613849780939405 4 0.3479981015456819 1.2751977279650353 5 0.18306591839440042 0.8385291549274712 6 0.09066636473353215 0.4983541941644999 7 0.05073888090584047 0.32537155917132177 8 0.026847541261982563 0.19675925510319794 9 0.020877409303017173 0.17213127249602192 >10 0.022863585840797982 0.2568060560798546 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001839599212651537 0.0 2 0.0 0.0 0.0 0.003679198425303074 0.0 3 0.0 0.0 0.0 0.003679198425303074 0.0 4 0.0 0.0 0.0 0.006745197113055636 0.0 5 0.0 0.0 0.0 0.006745197113055636 0.0 6 0.0 0.0 0.0 0.007358396850606148 0.0 7 0.0 0.0 0.0 0.009197996063257685 0.0 8 0.0 0.0 0.0 0.009197996063257685 0.0 9 0.0 0.0 0.0 0.014716793701212295 0.0 10 0.0 0.0 0.0 0.01778279238896486 0.0 11 0.0 0.0 0.0 0.019009191864065883 0.0 12 0.0 0.0 0.0 0.019009191864065883 0.0 13 0.0 0.0 0.0 0.019009191864065883 0.0 14 0.0 0.0 0.0 0.019009191864065883 0.0 15 0.0 0.0 0.0 0.019009191864065883 0.0 16 0.0 0.0 0.0 0.019622391601616395 0.0 17 0.0 0.0 0.0 0.020235591339166907 0.0 18 0.0 0.0 0.0 0.022688390289368955 0.0 19 0.0 0.0 0.0 0.023301590026919467 0.0 20 0.0 0.0 0.0 0.02391478976446998 0.0 21 0.0 0.0 0.0 0.02575438897712152 0.0 22 0.0 0.0 0.0 0.038631583465682275 0.0 23 0.0 0.0 0.0 0.04108438241588432 0.0 24 0.0 0.0 0.0 0.04721637979138945 0.0 25 0.0 0.0 0.0 0.05150877795424304 0.0 26 0.0 0.0 0.0 0.06070677401750072 0.0 27 0.0 0.0 0.0 0.099338357483183 0.0 28 0.0 0.0 0.0 0.13613034173621374 0.0 29 0.0 0.0 0.0 0.1594319317631332 0.0 30 0.0 0.0 0.0 0.1943843168035124 0.0 31 0.0 0.0 0.0 0.21339350866757828 0.0 32 0.0 0.0 0.0 0.25447789108346264 0.0 33 0.0 0.0 0.0 0.2894302761238418 0.0 34 0.0 0.0 0.0 0.33664665591523124 0.0 35 0.0 0.0 0.0 0.46112620263798526 0.0 36 0.0 0.0 0.0 0.5610777598587188 0.0 37 0.0 0.0 0.0 0.8738096260094801 0.0 38 0.0 0.0 0.0 1.193286689273297 0.0 39 0.0 0.0 0.0 1.5869609207807258 0.0 40 0.0 0.0 0.0 2.0548323205317667 0.0 41 0.0 0.0 0.0 2.673550855720234 0.0 42 0.0 0.0 0.0 3.3787305539033228 0.0 43 0.0 0.0 0.0 4.127447433452499 0.0 44 0.0 0.0 0.0 4.772533557355637 0.0 45 0.0 0.0 0.0 5.245310555007083 0.0 46 0.0 0.0 0.0 5.768369931137669 0.0 47 0.0 0.0 0.0 6.348456882860454 0.0 48 0.0 0.0 0.0 6.789347494159273 0.0 49 0.0 0.0 0.0 7.166465332752837 0.0 50 0.0 0.0 0.0 7.733061890249511 0.0 51 0.0 0.0 0.0 8.379987613365302 0.0 52 0.0 0.0 0.0 9.017102140680283 0.0 53 0.0 0.0 0.0 9.846148185848577 0.0 54 0.0 0.0 0.0 10.583827470121843 0.0 55 0.0 0.0 0.0 11.092170052551218 0.0 56 0.0 0.0 0.0 11.56249425125246 0.0 57 0.0 0.0 0.0 11.988668068850066 0.0 58 0.0 0.0 0.0 12.322248726077545 0.0 59 0.0 0.0 0.0 12.775403332127373 0.0 60 0.0 0.0 0.0 13.048277215337352 0.0 61 0.0 0.0 0.0 13.306434304846118 0.0 62 0.0 0.0 0.0 13.510629817450438 0.0 63 0.0 0.0 0.0 13.814163687537942 0.0 64 0.0 0.0 0.0 14.118310757362996 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCGTC 15 0.0022220132 69.995705 15 TTGCAGA 15 0.0022220132 69.995705 32 ATCTCGG 105 0.0 56.663193 42 GTGTACA 25 2.3856583E-4 55.99657 36 TCTCGGT 125 0.0 53.196735 43 GAGCTAT 20 0.0069430806 52.49678 11 GTATCGC 20 0.0069430806 52.49678 23 ATCGGAC 50 6.160553E-8 48.996998 10 GTAGATC 75 1.4551915E-11 46.663807 38 GATCTCG 100 0.0 45.49721 41 CGTCATC 40 4.5790526E-5 43.747314 9 CTCGGTG 145 0.0 43.445614 44 AGATCTC 90 1.8189894E-12 42.775158 40 CTTCCGA 60 2.582783E-7 40.830826 18 CATCGGA 60 2.582783E-7 40.830826 9 TAATGGC 35 0.0012529804 39.997547 54 AGTGTAC 35 0.0012529804 39.997547 35 CCGACTA 80 1.4097168E-9 39.372585 21 TCCGACT 45 9.170512E-5 38.88651 20 CTCGGTT 45 9.170512E-5 38.88651 44 >>END_MODULE