SRR1779712_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779712_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	163079
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	15809	9.694074650936049	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	2038	1.249701065127944	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	1152	0.7064060976581902	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	724	0.44395660998657094	Illumina PCR Primer Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	611	0.37466503964336306	No Hit
CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	364	0.22320470446838647	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	251	0.1539131341251786	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	208	0.12754554541050656	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT	178	0.1091495532839912	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCAAC	15	0.0022214723	70.00001	42
CAATACG	15	0.0022214723	70.00001	69
ATATCGT	30	8.348017E-6	58.333336	37
ATCGTAT	25	2.3849361E-4	55.999996	39
TCGTTGT	20	0.0069413963	52.5	34
AGTTTCC	20	0.0069413963	52.5	33
CCTACCG	20	0.0069413963	52.5	51
CCTGTCA	20	0.0069413963	52.5	10
AATGCGG	20	0.0069413963	52.5	11
CTTGATA	20	0.0069413963	52.5	28
GATGATC	20	0.0069413963	52.5	4
CCGTCTT	2505	0.0	50.85828	47
CGTATGC	2510	0.0	50.75697	41
TATGCCG	2510	0.0	50.75697	43
TCGTATG	2510	0.0	50.75697	40
ATGCCGT	2510	0.0	50.75697	44
GCCGTCT	2510	0.0	50.75697	46
CGTCTTC	2515	0.0	50.656063	48
TGCCGTC	2530	0.0	50.632412	45
TCTCGTA	2435	0.0	50.595486	38