##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779712_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 163079 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.57505871387487 34.0 34.0 34.0 34.0 34.0 2 33.60381164956861 34.0 34.0 34.0 34.0 34.0 3 33.634030132635104 34.0 34.0 34.0 34.0 34.0 4 33.67688666229251 34.0 34.0 34.0 34.0 34.0 5 33.669945241263434 34.0 34.0 34.0 34.0 34.0 6 37.289559048068725 38.0 38.0 38.0 36.0 38.0 7 37.2731927470735 38.0 38.0 38.0 36.0 38.0 8 37.13346292287787 38.0 38.0 38.0 36.0 38.0 9 37.1493509280778 38.0 38.0 38.0 36.0 38.0 10-11 37.062236707362686 38.0 38.0 38.0 36.0 38.0 12-13 37.043672085308344 38.0 38.0 38.0 35.5 38.0 14-15 37.06192397549654 38.0 38.0 38.0 36.0 38.0 16-17 37.03432998730676 38.0 38.0 38.0 35.5 38.0 18-19 37.02728125632362 38.0 38.0 38.0 35.0 38.0 20-21 37.045474892536745 38.0 38.0 38.0 35.5 38.0 22-23 36.98249927949031 38.0 37.5 38.0 35.0 38.0 24-25 36.96509973693732 38.0 37.0 38.0 35.0 38.0 26-27 36.886006168789365 38.0 37.5 38.0 35.0 38.0 28-29 36.84282157727236 38.0 37.0 38.0 35.0 38.0 30-31 36.729207929899005 38.0 37.0 38.0 34.5 38.0 32-33 36.70671576352565 38.0 37.0 38.0 34.0 38.0 34-35 36.61724072382097 38.0 37.0 38.0 34.0 38.0 36-37 36.75551726463861 38.0 37.0 38.0 34.5 38.0 38-39 36.41594564597527 38.0 37.0 38.0 34.0 38.0 40-41 36.70120309788507 38.0 37.0 38.0 34.0 38.0 42-43 36.825924858504166 38.0 37.0 38.0 35.0 38.0 44-45 36.818170947822836 38.0 37.0 38.0 35.0 38.0 46-47 36.83181464198333 38.0 37.0 38.0 35.0 38.0 48-49 36.81488726322825 38.0 37.0 38.0 35.0 38.0 50-51 36.769602462610145 38.0 37.0 38.0 34.0 38.0 52-53 36.74576738881156 38.0 37.0 38.0 34.0 38.0 54-55 36.736293452866406 38.0 37.0 38.0 34.0 38.0 56-57 36.76026956260463 38.0 37.0 38.0 34.5 38.0 58-59 36.71445741021223 38.0 37.0 38.0 34.0 38.0 60-61 36.7766235996051 38.0 37.0 38.0 34.5 38.0 62-63 36.77708656540695 38.0 37.0 38.0 35.0 38.0 64-65 36.78781449481539 38.0 37.0 38.0 35.0 38.0 66-67 36.7294593417914 38.0 37.0 38.0 34.0 38.0 68-69 36.58494349364419 38.0 37.0 38.0 34.0 38.0 70-71 35.707951360996816 38.0 37.0 38.0 29.5 38.0 72-73 34.27675237154999 38.0 36.0 38.0 22.0 38.0 74-75 34.12455619668995 38.0 36.0 38.0 21.0 38.0 76 33.67325038784883 38.0 34.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 8.0 22 14.0 23 28.0 24 61.0 25 97.0 26 180.0 27 334.0 28 618.0 29 1032.0 30 1517.0 31 2401.0 32 3882.0 33 6011.0 34 10198.0 35 18960.0 36 26090.0 37 91645.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.600794706859865 16.371206593123578 11.205612003998063 34.82238669601849 2 19.65243838875637 16.666768866622924 38.94247573262039 24.73831701200032 3 18.51495287560017 18.6682528099878 36.01138098712894 26.805413327283095 4 13.55110100012877 24.122051275762054 32.57500965789586 29.75183806621331 5 13.712372531104558 30.62748729143544 40.71094377571606 14.949196401743938 6 28.3604878617112 41.25791794161112 16.076257519361782 14.305336677315902 7 26.911496881879334 26.290325547740668 18.716082389516735 28.082095180863263 8 23.692811459476694 39.889256127398376 16.328895811232595 20.089036601892335 9 21.99976698409973 15.983664358991653 17.132187467423766 44.88438118948485 10-11 23.727763844517074 27.016047437131697 27.099749201307343 22.156439517043886 12-13 23.49352154477278 19.05824784306992 28.174381741364613 29.273848870792683 14-15 21.557343373457037 19.50251105292527 20.633251368968413 38.306894204649275 16-17 27.842334083481013 27.599200387542233 20.34780689113865 24.210658637838105 18-19 28.01127061117618 22.954212375597102 21.452179618467124 27.58233739475959 20-21 21.589536359678437 21.977998393416687 21.311756878568055 35.120708368336814 22-23 22.302687654449684 27.806155298965535 21.04532159260236 28.845835453982428 24-25 27.34840169488407 28.083934780075914 21.38135504878004 23.186308476259974 26-27 27.49740923110885 28.56376357470919 22.114128735152903 21.82469845902906 28-29 22.048516363234995 22.799686041734375 27.76997651445005 27.381821080580576 30-31 26.677254582135042 21.516872190778702 29.580755339436713 22.225117887649546 32-33 22.24351387977606 22.199670098541198 27.9763182261358 27.580497795546943 34-35 21.578805364271304 33.04349425738446 23.671962668399978 21.70573770994426 36-37 27.28524212191637 28.75262909387475 22.06200675746111 21.900122026747773 38-39 21.453712617811 23.174351081377736 28.33626647207795 27.03566982873331 40-41 21.077821178692535 20.903365853359414 29.530779560826346 28.488033407121705 42-43 26.636170199719157 20.82211688813397 29.145076925907077 23.396635986239797 44-45 20.83315448340988 26.483176865200303 30.523856535789402 22.159812115600413 46-47 25.98679167765316 21.108481165570062 25.34170555375002 27.563021603026755 48-49 25.270574384194163 20.514903819621168 24.568767284567603 29.645754511617067 50-51 20.4364142532147 21.015888005199933 30.43279637476315 28.114901366822213 52-53 18.585777445287253 21.023246402050543 36.5954537371458 23.795522415516405 54-55 18.30155936693259 21.327393471875595 31.446108941065372 28.92493822012644 56-57 23.995425529957874 21.055745988140718 25.738445783945203 29.210382697956206 58-59 18.738770779806107 21.335058468594976 35.08728898264032 24.838881768958604 60-61 23.950048749379135 27.074914611936546 25.371139141152447 23.60389749753187 62-63 18.20068801010553 35.04651120009321 22.633815512726958 24.1189852770743 64-65 18.310450763127072 36.12022394054416 21.483759404950973 24.0855658913778 66-67 18.35276154501806 35.93841021836043 21.144966549954315 24.5638616866672 68-69 18.18597121640432 35.99175859552732 21.090698373181098 24.731571814887264 70-71 18.518325474156697 34.34163810177889 21.73026569944628 25.40977072461813 72-73 19.41850268888085 30.88963017923828 22.719050276246485 26.972816855634385 74-75 19.43321948258206 29.78740365099124 23.685453062626088 27.093923803800614 76 19.442110878776546 29.834620030782627 23.462861557895252 27.260407532545578 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 0.5 15 2.5 16 5.5 17 6.0 18 13.5 19 28.0 20 49.0 21 63.0 22 68.0 23 89.5 24 177.5 25 249.0 26 316.5 27 435.5 28 579.5 29 672.0 30 801.5 31 1058.5 32 1594.0 33 2002.0 34 2226.0 35 2691.5 36 3340.5 37 3748.0 38 4238.5 39 8267.5 40 12687.5 41 12940.5 42 12312.0 43 11374.0 44 9942.0 45 8932.5 46 8417.0 47 8402.0 48 7896.0 49 7255.0 50 7105.0 51 6697.0 52 5655.0 53 4791.0 54 4561.0 55 4283.0 56 3674.5 57 3058.5 58 2773.0 59 2584.0 60 2361.5 61 2269.5 62 2211.0 63 2052.0 64 1893.0 65 1952.0 66 1933.5 67 1856.0 68 1764.5 69 1669.0 70 1620.0 71 1575.0 72 1564.0 73 1431.0 74 1313.0 75 1317.0 76 1215.5 77 1022.0 78 820.5 79 711.0 80 620.5 81 478.0 82 360.0 83 294.0 84 235.5 85 146.0 86 89.5 87 64.0 88 51.0 89 28.5 90 17.0 91 9.5 92 4.0 93 3.5 94 2.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 163079.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.21189730130796 #Duplication Level Percentage of deduplicated Percentage of total 1 50.09652182747993 18.140901035694355 2 23.38876282724286 16.939029550095352 3 11.57753920140888 12.577339816898558 4 5.7032546482880075 8.261026864280502 5 2.7551054966640702 4.9883798649734175 6 1.5206421241575507 3.30392018592216 7 0.9533647170386427 2.4166201656865693 8 0.7247603887966946 2.0995959013729544 9 0.5655840417245233 1.8432784110768403 >10 2.67043722694483 15.446501388897405 >50 0.020320384732617606 0.472776997651445 >100 0.015240288549463204 1.0418263540983206 >500 0.003386730788769601 0.818621649629934 >1k 0.003386730788769601 1.9561071627861342 >5k 0.0 0.0 >10k+ 0.0016933653943848005 9.694074650936049 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT 15809 9.694074650936049 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 2038 1.249701065127944 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 1152 0.7064060976581902 No Hit ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT 724 0.44395660998657094 Illumina PCR Primer Index 9 (95% over 21bp) TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC 611 0.37466503964336306 No Hit CTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 364 0.22320470446838647 No Hit CTTTACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC 251 0.1539131341251786 No Hit CTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG 208 0.12754554541050656 No Hit CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGACCTCGTATGCCGT 178 0.1091495532839912 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001839599212651537 0.0 2 0.0 0.0 0.0 0.004905597900404099 0.0 3 0.0 0.0 0.0 0.004905597900404099 0.0 4 0.0 0.0 0.0 0.01042439553835871 0.0 5 0.0 0.0 0.0 0.011037595275909222 0.0 6 0.0 0.0 0.0 0.012263994751010247 0.0 7 0.0 0.0 0.0 0.014716793701212295 0.0 8 0.0 0.0 0.0 0.015329993438762807 0.0 9 0.0 0.0 0.0 0.022075190551818443 0.0 10 0.0 0.0 0.0 0.027593988189773055 0.0 11 0.0 0.0 0.0 0.02882038766487408 0.0 12 0.0 0.0 0.0 0.02882038766487408 0.0 13 0.0 0.0 0.0 0.030659986877525615 0.0 14 0.0 0.0 0.0 0.030659986877525615 0.0 15 0.0 0.0 0.0 0.03127318661507613 0.0 16 0.0 0.0 0.0 0.03372598556527818 0.0 17 0.0 0.0 0.0 0.03433918530282869 0.0 18 0.0 0.0 0.0 0.036178784515480227 0.0 19 0.0 0.0 0.0 0.03740518399058125 0.0 20 0.0 0.0 0.0 0.038631583465682275 0.0 21 0.0 0.0 0.0 0.042310781890985354 0.0 22 0.0 0.0 0.0 0.0447635808411874 0.0 23 0.0 0.0 0.0 0.05518797637954611 0.0 24 0.0 0.0 0.0 0.06070677401750072 0.0 25 0.0 0.0 0.0 0.06745197113055636 0.0 26 0.0 0.0 0.0 0.08032916561911711 0.0 27 0.0 0.0 0.0 0.13122474383580965 0.0 28 0.0 0.0 0.0 0.17660152441454754 0.0 29 0.0 0.0 0.0 0.22688390289368957 0.0 30 0.0 0.0 0.0 0.2790058805854831 0.0 31 0.0 0.0 0.0 0.3476842511911405 0.0 32 0.0 0.0 0.0 0.4120702236339443 0.0 33 0.0 0.0 0.0 0.4923993892530614 0.0 34 0.0 0.0 0.0 0.6107469386003103 0.0 35 0.0 0.0 0.0 0.8039048559287216 0.0 36 0.0 0.0 0.0 1.1289007168304932 0.0 37 0.0 0.0 0.0 1.6059701126447918 0.0 38 0.0 0.0 0.0 2.1517178790647478 0.0 39 0.0 0.0 0.0 2.747134824226295 0.0 40 0.0 0.0 0.0 3.422267735269409 0.0 41 0.0 0.0 0.0 4.229238589885884 0.0 42 0.0 0.0 0.0 5.239791757369128 0.0 43 0.0 0.0 0.0 6.262608919603382 0.0 44 0.0 0.0 0.0 7.09778696214718 0.0 45 0.0 0.0 0.0 8.000416975821535 0.0 46 0.0 0.0 0.0 8.828849821252277 0.0 47 0.0 0.0 0.0 9.643792272456908 0.0 48 0.0 0.0 0.0 10.444631129697877 0.0 49 0.0 0.0 0.0 11.194574408722152 0.0 50 0.0 0.0 0.0 11.899754106905242 0.0 51 0.0 0.0 0.0 12.654602983829923 0.0 52 0.0 0.0 0.0 13.541289804327963 0.0 53 0.0 0.0 0.0 14.435335021676611 0.0 54 0.0 0.0 0.0 15.293814654247328 0.0 55 0.0 0.0 0.0 16.097106310438498 0.0 56 0.0 0.0 0.0 16.786956015182824 0.0 57 0.0 0.0 0.0 17.48477731651531 0.0 58 0.0 0.0 0.0 18.090618657215213 0.0 59 0.0 0.0 0.0 18.75410077324487 0.0 60 0.0 0.0 0.0 19.346451719718665 0.0 61 0.0 0.0 0.0 19.921633073541045 0.0 62 0.0 0.0 0.0 20.54893640505522 0.0 63 0.0 0.0 0.0 21.182371733944898 0.0 64 0.0 0.0 0.0 21.863023442625966 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCAAC 15 0.0022214723 70.00001 42 CAATACG 15 0.0022214723 70.00001 69 ATATCGT 30 8.348017E-6 58.333336 37 ATCGTAT 25 2.3849361E-4 55.999996 39 TCGTTGT 20 0.0069413963 52.5 34 AGTTTCC 20 0.0069413963 52.5 33 CCTACCG 20 0.0069413963 52.5 51 CCTGTCA 20 0.0069413963 52.5 10 AATGCGG 20 0.0069413963 52.5 11 CTTGATA 20 0.0069413963 52.5 28 GATGATC 20 0.0069413963 52.5 4 CCGTCTT 2505 0.0 50.85828 47 CGTATGC 2510 0.0 50.75697 41 TATGCCG 2510 0.0 50.75697 43 TCGTATG 2510 0.0 50.75697 40 ATGCCGT 2510 0.0 50.75697 44 GCCGTCT 2510 0.0 50.75697 46 CGTCTTC 2515 0.0 50.656063 48 TGCCGTC 2530 0.0 50.632412 45 TCTCGTA 2435 0.0 50.595486 38 >>END_MODULE