FastQCFastQC Report
Wed 25 May 2016
SRR1779710_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779710_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences196351
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTAC207.915274E-569.9946635
TTCTACG200.00694559552.495992
GCAATTG200.00694559552.4959943
GATCTAT200.00694559552.4959941
CCGTATC1300.048.45783655
CTCGGTG2600.047.11178644
TCGCCGT1950.046.663152
ACTCGGT305.8696454E-446.663143
CATCGGA604.9076334E-946.66319
CTCTCGG703.8198777E-1044.9965642
GCCGTAT1400.044.9965654
TGGTCGC2200.044.54205349
TCGGTGG2050.044.38685245
AGATCTC1500.044.3299540
TCTCGGT2400.043.74665543
ATCGGAC659.958967E-943.0736310
TAGATCT1400.042.4967539
ATCTCGG2150.042.3223542
GGTGGTC2100.041.66348647
CGGTGGT2050.040.97247746
Produced by FastQC (version 0.11.5)