##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779710_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 196351 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.175838167363548 34.0 23.0 34.0 12.0 34.0 2 27.70137152344526 34.0 23.0 34.0 12.0 34.0 3 26.695458642940448 32.0 21.0 34.0 11.0 34.0 4 28.91001828358399 34.0 23.0 34.0 12.0 34.0 5 28.540898696721687 34.0 23.0 34.0 11.0 34.0 6 30.842430137865353 36.0 26.0 38.0 11.0 38.0 7 31.777159270897524 37.0 27.0 38.0 12.0 38.0 8 31.01612418576936 37.0 26.0 38.0 11.0 38.0 9 32.44230994494553 37.0 31.0 38.0 12.0 38.0 10-11 32.129660658718315 37.0 31.0 38.0 11.0 38.0 12-13 31.21637017382137 36.0 27.5 38.0 11.0 38.0 14-15 31.167788806779697 36.5 26.5 38.0 11.0 38.0 16-17 30.86625736563603 36.0 27.0 38.0 11.0 38.0 18-19 31.47046360853777 37.0 27.5 38.0 11.5 38.0 20-21 30.331149319331196 35.5 25.0 38.0 11.0 38.0 22-23 30.34609958696416 35.5 26.0 38.0 11.0 38.0 24-25 31.480455918228074 36.5 28.5 38.0 11.0 38.0 26-27 30.064776853695676 35.0 24.0 38.0 11.0 38.0 28-29 32.11581555479728 37.0 31.0 38.0 11.0 38.0 30-31 32.56584891342545 37.0 31.5 38.0 11.0 38.0 32-33 32.67817581779568 38.0 32.0 38.0 11.0 38.0 34-35 32.7243991627239 38.0 32.5 38.0 11.0 38.0 36-37 30.69992513407113 36.5 25.0 38.0 11.0 38.0 38-39 29.02080457955396 34.0 22.5 37.5 11.0 38.0 40-41 30.16628894174208 35.0 25.0 37.5 11.0 38.0 42-43 31.197592576559323 36.5 28.0 38.0 11.0 38.0 44-45 32.773393056312415 37.0 33.0 38.0 11.0 38.0 46-47 31.374912783739322 37.0 28.5 38.0 11.0 38.0 48-49 30.801162204419633 36.0 27.0 38.0 11.0 38.0 50-51 28.684114162902148 34.0 21.5 37.5 11.0 38.0 52-53 31.960076597521784 36.5 29.0 38.0 11.0 38.0 54-55 31.037687610452707 36.5 27.0 38.0 11.0 38.0 56-57 31.452829371890132 36.5 28.0 38.0 11.0 38.0 58-59 32.528897229960634 37.0 32.0 38.0 11.0 38.0 60-61 32.97898151779212 38.0 34.0 38.0 11.0 38.0 62-63 32.88449511334294 38.0 33.5 38.0 11.0 38.0 64-65 32.60354161679849 37.5 32.5 38.0 11.0 38.0 66-67 30.538041568415743 36.5 25.0 38.0 11.0 38.0 68-69 30.63450911887385 36.5 25.0 38.0 11.0 38.0 70-71 30.208567819873593 35.5 24.0 38.0 11.0 38.0 72-73 29.003503929188035 34.0 22.5 37.5 11.0 38.0 74-75 31.096358052670986 36.0 28.0 38.0 11.0 38.0 76 31.4605731572541 37.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 10.0 4 0.0 5 1.0 6 0.0 7 1.0 8 1.0 9 2.0 10 1.0 11 11.0 12 65.0 13 326.0 14 976.0 15 1640.0 16 2698.0 17 4217.0 18 5439.0 19 5802.0 20 5161.0 21 4146.0 22 3399.0 23 3024.0 24 2948.0 25 3091.0 26 3325.0 27 3936.0 28 4697.0 29 5646.0 30 6802.0 31 8866.0 32 11197.0 33 14803.0 34 20199.0 35 26513.0 36 30558.0 37 16849.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.49508787834032 19.108127791556957 11.169283578896975 30.22750075120575 2 20.71850920036058 17.323059215384692 38.53201664366364 23.426414940591084 3 20.418640183346064 17.17799847211612 36.25261013496308 26.15075120957474 4 14.411220950663875 18.598196050869127 32.38755876076538 34.60302423770162 5 14.394120732769377 29.057656951072314 39.29595469338073 17.252267622777577 6 28.059953858141796 33.1727365788817 16.59833665221975 22.168972910756757 7 27.629092798101357 25.360706082474753 19.953043274544054 27.057157844879832 8 23.79366195031018 31.59194857847182 18.3611934521081 26.253196019109904 9 23.036803879024948 15.579256180668033 19.787305564893195 41.59663437541383 10-11 24.811545631424 23.216304868234744 26.788279156946835 25.18387034339442 12-13 24.37103835017101 19.478392853050007 28.860038047118326 27.290530749660658 14-15 24.053234321163085 22.397428943233532 23.304785842889487 30.244550892713896 16-17 25.233599637344362 22.597470069449574 25.651519511841066 26.517410781365 18-19 22.39237008646047 22.368940445417852 27.616670698941846 27.622018769179835 20-21 24.424586298048766 22.05722813326067 27.27606105828244 26.242124510408125 22-23 25.36449088422624 21.22412910553619 27.24112552238388 26.1702544878537 24-25 22.734854677739325 24.35398888150372 23.88363014064923 29.02752630010772 26-27 23.61355516111206 23.43758356104381 26.8689024312603 26.079958846583835 28-29 23.342653994641893 24.27981338304353 25.97102955108028 26.4065030712343 30-31 23.206863883625694 24.05109712120286 26.181671861948132 26.560367133223316 32-33 23.14879659363803 24.11167448055272 25.93963995854099 26.799888967268267 34-35 23.441327920870748 23.70770664724428 26.137202870574573 26.7137625613104 36-37 24.373448104618443 21.587358180637437 29.694268651394957 24.344925063349166 38-39 24.13533164402226 20.461971400557726 32.860071562273184 22.54262539314683 40-41 23.52202635318566 22.79876536292931 25.895035475442235 27.784172808442797 42-43 21.122086997267488 23.225076971266606 27.334285765217903 28.318550266248003 44-45 20.774292786781707 22.08048529546589 29.351513237646053 27.79370868010635 46-47 22.98647719459088 20.950671046935085 29.693635877454348 26.369215881019688 48-49 23.18210179160353 21.58302879044478 30.026358346172948 25.208511071778744 50-51 24.79391249207356 20.430485416618918 31.38336478443896 23.392237306868566 52-53 19.514903327017503 23.25499663834729 29.473799482509218 27.75630055212599 54-55 21.66228633131634 22.44412525721737 28.739583970009985 27.15400444145631 56-57 21.78091750408736 22.782257037644456 27.93946123247274 27.497364225795444 58-59 19.726688839879188 23.77873307085411 28.444785135458634 28.049792953808073 60-61 19.697147193798294 23.000718167603 28.244615016324303 29.057519622274402 62-63 19.584378541504847 23.53278239720882 28.25818445748921 28.62465460379713 64-65 20.38204719436479 24.00973835802727 27.013756958698565 28.594457488909374 66-67 19.443531853662886 24.98070825533866 23.252728221976035 32.32303166902242 68-69 19.807617354178184 24.86734207784466 23.662148357793 31.662892210184157 70-71 20.336168695563593 25.145163754902462 23.090459939897112 31.42820760963684 72-73 19.698470706581947 25.242127513274674 22.309602332777303 32.74979944736607 74-75 21.402868079059356 25.392762824479775 24.900233531210926 28.304135565249943 76 21.861550137268186 24.981281611156668 25.49164421308912 27.665524038486026 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 1.0 3 3.0 4 4.0 5 4.0 6 2.5 7 0.5 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 1.0 14 2.0 15 3.5 16 5.5 17 7.0 18 11.5 19 20.5 20 34.0 21 43.0 22 50.5 23 87.0 24 162.5 25 209.0 26 272.0 27 420.0 28 649.5 29 794.0 30 969.5 31 1342.0 32 1776.0 33 2013.0 34 2496.5 35 3340.5 36 4266.0 37 4831.0 38 5398.0 39 6635.5 40 7995.0 41 9154.0 42 9624.0 43 10154.5 44 11083.5 45 11673.5 46 11865.0 47 11746.5 48 11339.0 49 10548.5 50 10047.0 51 9549.0 52 8527.5 53 7427.0 54 6850.0 55 6507.0 56 5713.0 57 4958.0 58 4654.0 59 4365.0 60 3970.5 61 3718.5 62 3572.0 63 3413.0 64 3202.5 65 3017.0 66 2801.5 67 2720.0 68 2657.5 69 2444.5 70 2248.5 71 2203.0 72 2091.5 73 1821.5 74 1546.5 75 1430.0 76 1284.5 77 1018.5 78 782.5 79 667.0 80 570.5 81 395.0 82 264.5 83 213.0 84 181.0 85 107.0 86 51.5 87 38.0 88 29.0 89 14.0 90 8.5 91 6.5 92 4.0 93 3.0 94 1.0 95 0.5 96 1.0 97 1.5 98 1.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 5.092920331447255E-4 4 0.002037168132578902 5 0.0 6 0.0 7 0.0 8 0.006620796430881431 9 0.006620796430881431 10-11 0.008657964563460335 12-13 0.007894026513743244 14-15 0.0058568583811643435 16-17 0.010949778712611598 18-19 0.009421902613177421 20-21 0.007130088464026157 22-23 0.007894026513743244 24-25 0.0058568583811643435 26-27 0.006366150414309069 28-29 0.006620796430881431 30-31 0.009676548629749785 32-33 0.006366150414309069 34-35 0.007130088464026157 36-37 0.009421902613177421 38-39 0.009421902613177421 40-41 0.009167256596605059 42-43 0.0058568583811643435 44-45 0.008657964563460335 46-47 0.008148672530315608 48-49 0.009421902613177421 50-51 0.00738473448059852 52-53 0.009676548629749785 54-55 0.009676548629749785 56-57 0.007130088464026157 58-59 0.009167256596605059 60-61 0.009167256596605059 62-63 0.009421902613177421 64-65 0.007130088464026157 66-67 0.01196836277890105 68-69 0.038451548502426776 70-71 0.010695132696039236 72-73 0.009421902613177421 74-75 0.008912610580032697 76 0.01018584066289451 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 196351.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 89.54968628155979 #Duplication Level Percentage of deduplicated Percentage of total 1 92.92368805487338 83.21287113439436 2 4.916185990131486 8.80485826236148 3 1.1933597399934521 3.205949710123722 4 0.4094798949190963 1.4667518451444457 5 0.2224870814080681 0.9961824170896176 6 0.12582363449076944 0.676048019727243 7 0.08934370627816825 0.5600490607909254 8 0.038607967134693305 0.2765865075904445 9 0.032625422380439056 0.2629436705074528 >10 0.04839850839042633 0.5377593722703033 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0015278760994341764 0.0 2 0.0 0.0 0.0 0.0015278760994341764 0.0 3 0.0 0.0 0.0 0.0015278760994341764 0.0 4 0.0 0.0 0.0 0.002037168132578902 0.0 5 0.0 0.0 0.0 0.0025464601657236275 0.0 6 0.0 0.0 0.0 0.003055752198868353 0.0 7 0.0 0.0 0.0 0.0035650442320130787 0.0 8 0.0 0.0 0.0 0.0045836282983025296 0.0 9 0.0 0.0 0.0 0.008657964563460335 0.0 10 0.0 0.0 0.0 0.009676548629749785 5.092920331447255E-4 11 0.0 0.0 0.0 0.010695132696039236 5.092920331447255E-4 12 0.0 0.0 0.0 0.011713716762328687 5.092920331447255E-4 13 0.0 0.0 0.0 0.013241592861762864 5.092920331447255E-4 14 0.0 0.0 0.0 0.013750884894907589 5.092920331447255E-4 15 0.0 0.0 5.092920331447255E-4 0.013750884894907589 5.092920331447255E-4 16 0.0 0.0 5.092920331447255E-4 0.013750884894907589 5.092920331447255E-4 17 0.0 0.0 5.092920331447255E-4 0.014260176928052315 5.092920331447255E-4 18 0.0 0.0 0.001018584066289451 0.014260176928052315 5.092920331447255E-4 19 0.0 0.0 0.001018584066289451 0.01731592912692067 5.092920331447255E-4 20 0.0 0.0 0.001018584066289451 0.02240884945836792 5.092920331447255E-4 21 0.0 0.0 0.001018584066289451 0.025464601657236276 5.092920331447255E-4 22 0.0 0.0 0.001018584066289451 0.03463185825384134 5.092920331447255E-4 23 0.0 0.0 0.001018584066289451 0.03717831841956496 5.092920331447255E-4 24 0.0 0.0 0.001018584066289451 0.042780530784156945 5.092920331447255E-4 25 0.0 0.0 0.001018584066289451 0.04532699094988057 5.092920331447255E-4 26 0.0 0.0 0.001018584066289451 0.04838274314874892 5.092920331447255E-4 27 0.0 0.0 0.001018584066289451 0.09014468986661642 5.092920331447255E-4 28 0.0 0.0 0.001018584066289451 0.14311106131366788 5.092920331447255E-4 29 0.0 0.0 0.001018584066289451 0.16857566297090415 5.092920331447255E-4 30 0.0 0.0 0.001018584066289451 0.22256061848424505 5.092920331447255E-4 31 0.0 0.0 0.001018584066289451 0.2495530962409155 5.092920331447255E-4 32 0.0 0.0 0.001018584066289451 0.30557521988683534 5.092920331447255E-4 33 0.0 0.0 0.001018584066289451 0.36261592759904454 5.092920331447255E-4 34 0.0 0.0 0.001018584066289451 0.4374818564713192 5.092920331447255E-4 35 0.0 0.0 0.001018584066289451 0.5902694664147369 5.092920331447255E-4 36 0.0 0.0 0.001018584066289451 0.7206482268997866 5.092920331447255E-4 37 0.0 0.0 0.001018584066289451 1.1275725613824223 5.092920331447255E-4 38 0.0 0.0 0.001018584066289451 1.5187088428375715 5.092920331447255E-4 39 0.0 0.0 0.001018584066289451 2.0137406990542446 5.092920331447255E-4 40 0.0 0.0 0.001018584066289451 2.631002643225652 5.092920331447255E-4 41 0.0 0.0 0.001018584066289451 3.318037595937887 5.092920331447255E-4 42 0.0 0.0 0.0015278760994341764 3.9923402478215033 5.092920331447255E-4 43 0.0 0.0 0.0015278760994341764 4.771557058532934 5.092920331447255E-4 44 0.0 0.0 0.0015278760994341764 5.569617674470718 5.092920331447255E-4 45 0.0 0.0 0.0015278760994341764 6.111504397736706 5.092920331447255E-4 46 0.0 0.0 0.0015278760994341764 6.796502182316362 5.092920331447255E-4 47 0.0 0.0 0.0015278760994341764 7.63479686887258 5.092920331447255E-4 48 0.0 0.0 0.0015278760994341764 8.139505273719003 5.092920331447255E-4 49 0.0 0.0 0.0015278760994341764 8.624860581305926 5.092920331447255E-4 50 0.0 0.0 0.0015278760994341764 9.25791057850482 5.092920331447255E-4 51 0.0 0.0 0.0015278760994341764 10.09213092879588 5.092920331447255E-4 52 0.0 0.0 0.0015278760994341764 10.759303492215471 5.092920331447255E-4 53 0.0 0.0 0.0015278760994341764 11.56856853288244 5.092920331447255E-4 54 0.0 0.0 0.0015278760994341764 12.382417201847712 5.092920331447255E-4 55 0.0 0.0 0.0015278760994341764 12.876430473998095 5.092920331447255E-4 56 0.0 0.0 0.0015278760994341764 13.44174463078874 5.092920331447255E-4 57 0.0 0.0 0.0015278760994341764 13.86853135456402 5.092920331447255E-4 58 0.0 0.0 0.0015278760994341764 14.284622945643262 5.092920331447255E-4 59 0.0 0.0 0.0015278760994341764 14.738911439208357 5.092920331447255E-4 60 0.0 0.0 0.0015278760994341764 15.0582375439901 5.092920331447255E-4 61 0.0 0.0 0.0015278760994341764 15.381128693003856 5.092920331447255E-4 62 0.0 0.0 0.0015278760994341764 15.632209665344204 5.092920331447255E-4 63 0.0 0.0 0.0015278760994341764 15.964268070954565 5.092920331447255E-4 64 0.0 0.0 0.0015278760994341764 16.294798600465494 5.092920331447255E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTAC 20 7.915274E-5 69.99466 35 TTCTACG 20 0.006945595 52.49599 2 GCAATTG 20 0.006945595 52.49599 43 GATCTAT 20 0.006945595 52.49599 41 CCGTATC 130 0.0 48.457836 55 CTCGGTG 260 0.0 47.111786 44 TCGCCGT 195 0.0 46.6631 52 ACTCGGT 30 5.8696454E-4 46.6631 43 CATCGGA 60 4.9076334E-9 46.6631 9 CTCTCGG 70 3.8198777E-10 44.99656 42 GCCGTAT 140 0.0 44.99656 54 TGGTCGC 220 0.0 44.542053 49 TCGGTGG 205 0.0 44.386852 45 AGATCTC 150 0.0 44.32995 40 TCTCGGT 240 0.0 43.746655 43 ATCGGAC 65 9.958967E-9 43.07363 10 TAGATCT 140 0.0 42.49675 39 ATCTCGG 215 0.0 42.32235 42 GGTGGTC 210 0.0 41.663486 47 CGGTGGT 205 0.0 40.972477 46 >>END_MODULE