##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779709_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 172818 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.58505479753266 34.0 34.0 34.0 34.0 34.0 2 33.6142647177956 34.0 34.0 34.0 34.0 34.0 3 33.636096934347115 34.0 34.0 34.0 34.0 34.0 4 33.67815273871935 34.0 34.0 34.0 34.0 34.0 5 33.673679825018226 34.0 34.0 34.0 34.0 34.0 6 37.314105012209374 38.0 38.0 38.0 36.0 38.0 7 37.290264902961496 38.0 38.0 38.0 36.0 38.0 8 37.15695702993901 38.0 38.0 38.0 36.0 38.0 9 37.16999386637966 38.0 38.0 38.0 36.0 38.0 10-11 37.08687463111481 38.0 38.0 38.0 36.0 38.0 12-13 37.05102767072874 38.0 38.0 38.0 36.0 38.0 14-15 37.08030992142022 38.0 38.0 38.0 36.0 38.0 16-17 37.039165480447636 38.0 38.0 38.0 35.5 38.0 18-19 37.03650950711153 38.0 38.0 38.0 35.0 38.0 20-21 37.054181277413235 38.0 38.0 38.0 35.5 38.0 22-23 37.01541795414829 38.0 38.0 38.0 35.0 38.0 24-25 36.97463805853557 38.0 38.0 38.0 35.0 38.0 26-27 36.86931627492507 38.0 37.5 38.0 34.5 38.0 28-29 36.815198648288955 38.0 37.0 38.0 34.5 38.0 30-31 36.661991227765625 38.0 37.0 38.0 34.0 38.0 32-33 36.710070710226944 38.0 37.0 38.0 34.0 38.0 34-35 36.68634632966473 38.0 37.0 38.0 34.0 38.0 36-37 36.74706627781828 38.0 37.0 38.0 34.5 38.0 38-39 36.39785786202826 38.0 37.0 38.0 34.0 38.0 40-41 36.67540128921756 38.0 37.0 38.0 34.0 38.0 42-43 36.82057713895543 38.0 37.0 38.0 35.0 38.0 44-45 36.792376951474964 38.0 37.0 38.0 34.5 38.0 46-47 36.805836197618305 38.0 37.0 38.0 34.5 38.0 48-49 36.802728882408076 38.0 37.0 38.0 34.5 38.0 50-51 36.73464569662882 38.0 37.0 38.0 34.0 38.0 52-53 36.71895578006921 38.0 37.0 38.0 34.0 38.0 54-55 36.69858463817427 38.0 37.0 38.0 34.0 38.0 56-57 36.72295420615908 38.0 37.0 38.0 34.0 38.0 58-59 36.65557696536241 38.0 37.0 38.0 34.0 38.0 60-61 36.696142762906646 38.0 37.0 38.0 34.0 38.0 62-63 36.72583006399796 38.0 37.0 38.0 34.0 38.0 64-65 36.752760129153216 38.0 37.0 38.0 34.5 38.0 66-67 36.69380793667327 38.0 37.0 38.0 34.0 38.0 68-69 36.526898239766695 38.0 37.0 38.0 34.0 38.0 70-71 35.423196657755554 38.0 36.5 38.0 28.5 38.0 72-73 33.57982386094041 38.0 34.5 38.0 20.0 38.0 74-75 33.362667661933365 38.0 35.0 38.0 14.5 38.0 76 32.930904188221135 38.0 34.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 6.0 21 4.0 22 20.0 23 34.0 24 67.0 25 126.0 26 226.0 27 418.0 28 640.0 29 1161.0 30 1726.0 31 2872.0 32 4168.0 33 6668.0 34 11036.0 35 21708.0 36 28857.0 37 93080.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.45453598583481 15.415639574581352 11.101852816257566 37.02797162332627 2 18.945364487495517 15.999490793783055 41.00614519320904 24.04899952551239 3 17.448413938362904 18.40259695170642 38.14706801374857 26.001921096182112 4 13.146778692034394 26.406971496024717 31.83811871448576 28.608131097455125 5 13.172239002881645 29.878832066104227 42.43539446122511 14.513534469789027 6 26.90518348783113 43.15117638208983 15.682394195049126 14.261245935029915 7 25.780300663125367 25.310442199307943 18.20759411635362 30.701663021213065 8 22.666620375192398 41.581316760985544 15.910379705817682 19.841683158004376 9 20.917381291300675 15.657512527630224 16.36461479706975 47.060491383999356 10-11 22.71233320603178 27.656841301253344 27.602738140702936 22.028087352011944 12-13 22.3362149776065 18.46943026768045 28.72183453112523 30.472520223587825 14-15 20.863856774178615 18.687578840167113 19.654781330648426 40.79378305500585 16-17 28.98367068245206 27.63687810297538 19.273165989653858 24.1062852249187 18-19 29.019835896723723 22.190107511948987 20.155597217882395 28.634459373444898 20-21 21.230138064322006 20.869064565033735 19.964066243099676 37.93673112754458 22-23 21.566908539619718 28.34224444212987 20.042761749354813 30.0480852688956 24-25 28.602344663171657 28.6885625339953 19.846890948859492 22.862201853973545 26-27 28.969493918457566 29.32304505317733 20.708491013667558 20.998970014697544 28-29 28.50455392378109 22.34315869874666 21.15259984492356 27.999687532548695 30-31 29.246085477207235 20.578296242289575 28.631566156303162 21.544052124200025 32-33 21.84321077665521 28.60147669802914 28.496452915784236 21.058859609531414 34-35 27.739876633221076 28.89311298591582 22.768461618581398 20.598548762281705 36-37 22.37672001759076 27.86602090060063 20.95123193185895 28.80602714994966 38-39 20.164276869307596 22.032716499438713 29.028226226434743 28.774780404818944 40-41 20.243551018991077 19.692971796919302 30.409158768183868 29.65431841590575 42-43 27.608524574986404 19.840525871147683 29.7859597958546 22.764989758011318 44-45 20.12782233332176 27.347845710516268 30.976807971391867 21.547523984770105 46-47 26.8383501718571 20.1891585367265 24.410651668229004 28.561839623187403 48-49 26.18679767153884 19.370378085616082 23.587242069691815 30.855582173153262 50-51 19.657963869504332 19.714381603768125 31.037854853082436 29.589799673645107 52-53 17.839576895925195 19.61977340323346 38.83825758890856 23.702392111932785 54-55 17.418324480088877 19.85788517399808 32.48041291995047 30.243377425962574 56-57 24.880799453760606 19.90706986540754 25.017648624564572 30.194482056267287 58-59 18.48968278767258 20.367380712657244 36.95101204735618 24.191924452313994 60-61 25.017937946278746 27.99679431540696 24.141293152333667 22.84397458598063 62-63 17.769271719381084 37.634968579661845 21.222326378039323 23.37343332291775 64-65 17.34541540811721 38.51595319931951 20.619669247416358 23.51896214514692 66-67 17.448124616648727 38.58510108900693 20.045365644782372 23.921408649561968 68-69 17.50888217662512 38.79138747121249 19.81304030830122 23.886690043861172 70-71 18.279056579754425 37.15787707299008 20.08644932819498 24.476617019060516 72-73 18.832818340682106 33.07612632943327 21.125692925505447 26.965362404379174 74-75 19.40885787360113 31.238354801004526 22.263016583920656 27.08977074147369 76 19.917485447117777 31.503084169473087 21.96530454003634 26.6141258433728 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.5 15 3.0 16 7.0 17 9.0 18 8.5 19 18.0 20 50.5 21 73.0 22 69.5 23 113.0 24 195.5 25 231.0 26 315.5 27 418.0 28 530.0 29 624.0 30 794.5 31 1034.0 32 1458.0 33 1813.0 34 2081.0 35 2607.0 36 3280.5 37 3696.0 38 4042.0 39 5265.0 40 10828.5 41 16234.5 42 16954.0 43 15624.0 44 12956.0 45 10694.0 46 9770.0 47 9179.5 48 8077.0 49 7403.0 50 7241.0 51 6662.5 52 5473.0 53 4540.5 54 4219.0 55 3904.0 56 3302.0 57 2803.0 58 2591.0 59 2411.0 60 2291.5 61 2228.5 62 2105.0 63 2137.5 64 2228.5 65 2267.0 66 2122.0 67 1997.0 68 1949.0 69 1936.5 70 1914.0 71 1856.0 72 1826.5 73 1753.5 74 1574.5 75 1439.0 76 1404.5 77 1288.5 78 1051.5 79 896.0 80 790.5 81 588.0 82 412.5 83 334.0 84 271.5 85 178.0 86 117.0 87 87.0 88 60.0 89 27.5 90 12.0 91 2.0 92 2.0 93 1.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 172818.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.75468990498675 #Duplication Level Percentage of deduplicated Percentage of total 1 47.96311345087093 15.710169079609763 2 23.128290287248703 15.151199527826961 3 12.25135144684309 12.038676526750686 4 6.160124368441508 8.070918538578157 5 3.1392431897678694 5.141246860859401 6 1.6005370455428751 3.145505676492032 7 1.1253224039854433 2.5801710469974193 8 0.8320672720206338 2.1803284380099295 9 0.6041762357347278 1.7810644724507865 >10 3.1498427728509344 16.473978405027253 >50 0.022965763346641698 0.5202004420835793 >100 0.012366180263576299 0.8471339790993994 >500 0.0052997915415327 1.215151199527827 >1k 0.0035331943610217996 2.4349315464824266 >5k 0.0 0.0 >10k+ 0.0017665971805108998 12.709324260204378 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT 21964 12.709324260204378 No Hit TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 2624 1.5183603559814371 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 1584 0.9165711905009896 No Hit ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT 888 0.5138353643717669 RNA PCR Primer, Index 24 (95% over 23bp) TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 688 0.39810667870245 No Hit CTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 524 0.3032091564536102 No Hit CTTTACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 335 0.19384554849610575 RNA PCR Primer, Index 24 (95% over 21bp) TTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC 224 0.12961612794963487 No Hit TCTTAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC 198 0.1145713988126237 No Hit CTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG 196 0.11341411195593051 No Hit CTTATACACATCTCCGAGCCCACGAGACGTGATAGCACCTCGTATGCCGT 194 0.11225682509923733 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 5.786434283465842E-4 0.0 4 0.0 0.0 0.0 0.0011572868566931684 0.0 5 0.0 0.0 0.0 0.0017359302850397528 0.0 6 0.0 0.0 0.0 0.0017359302850397528 0.0 7 0.0 0.0 0.0 0.0017359302850397528 0.0 8 0.0 0.0 0.0 0.0034718605700795055 0.0 9 0.0 0.0 0.0 0.008679651425198763 0.0 10 0.0 0.0 0.0 0.011572868566931686 0.0 11 0.0 0.0 0.0 0.014466085708664606 0.0 12 0.0 0.0 0.0 0.016780659422050943 0.0 13 0.0 0.0 0.0 0.018516589707090695 0.0 14 0.0 0.0 0.0 0.019095233135437283 0.0 15 0.0 0.0 0.0 0.02025251999213045 0.0 16 0.0 0.0 0.0 0.02025251999213045 0.0 17 0.0 0.0 0.0 0.02025251999213045 0.0 18 0.0 0.0 0.0 0.02314573713386337 0.0 19 0.0 0.0 0.0 0.027774884560636044 0.0 20 0.0 0.0 0.0 0.028932171417329212 0.0 21 0.0 0.0 0.0 0.029510814845675797 0.0 22 0.0 0.0 0.0 0.03182538855906213 0.0 23 0.0 0.0 0.0 0.03413996227244847 0.0 24 0.0 0.0 0.0 0.038190466270874565 0.0 25 0.0 0.0 0.0 0.03876910969922115 0.0 26 0.0 0.0 0.0 0.04976333483780625 0.0 27 0.0 0.0 0.0 0.09836938281891933 0.0 28 0.0 0.0 0.0 0.14871136108507216 0.0 29 0.0 0.0 0.0 0.2100475644898101 0.0 30 0.0 0.0 0.0 0.28990035760163874 0.0 31 0.0 0.0 0.0 0.3610734992882686 0.0 32 0.0 0.0 0.0 0.4461340832552165 0.0 33 0.0 0.0 0.0 0.5433461792174427 0.0 34 0.0 0.0 0.0 0.6937934705875546 0.0 35 0.0 0.0 0.0 0.9547616567718641 0.0 36 0.0 0.0 0.0 1.2869029846428035 0.0 37 0.0 0.0 0.0 1.8030529227279566 0.0 38 0.0 0.0 0.0 2.335983520235161 0.0 39 0.0 0.0 0.0 3.0043166799754655 0.0 40 0.0 0.0 0.0 3.7270423219803495 0.0 41 0.0 0.0 0.0 4.503003159393119 0.0 42 0.0 0.0 0.0 5.364603224201183 0.0 43 0.0 0.0 0.0 6.208265342730503 0.0 44 0.0 0.0 0.0 7.0704440509669135 0.0 45 0.0 0.0 0.0 7.949982062053722 0.0 46 0.0 0.0 0.0 8.861924105127938 0.0 47 0.0 0.0 0.0 9.803955606476178 0.0 48 0.0 0.0 0.0 10.659769237000775 0.0 49 0.0 0.0 0.0 11.51789744123876 0.0 50 0.0 0.0 0.0 12.267240680947587 0.0 51 0.0 0.0 0.0 13.107430938906827 0.0 52 0.0 0.0 0.0 13.917531738592045 0.0 53 0.0 0.0 0.0 14.680183777152843 0.0 54 0.0 0.0 0.0 15.474082560844357 0.0 55 0.0 0.0 0.0 16.295756229096508 0.0 56 0.0 0.0 0.0 17.041627608235252 0.0 57 0.0 0.0 0.0 17.747572590818088 0.0 58 0.0 0.0 0.0 18.503859551667073 0.0 59 0.0 0.0 0.0 19.184922866831002 0.0 60 0.0 0.0 0.0 19.86772211227997 0.0 61 0.0 0.0 0.0 20.49323565832263 0.0 62 0.0 0.0 0.0 21.14710273235427 0.0 63 0.0 0.0 0.0 21.816593178951265 0.0 64 0.0 0.0 0.0 22.4542582369892 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGATT 15 0.0022216982 70.0 22 GACGCGA 20 7.909599E-5 70.0 26 CTTTATA 100 0.0 56.000004 2 CGGAATC 20 0.0069420957 52.5 20 AGGAGCA 20 0.0069420957 52.5 60 GACGTCA 20 0.0069420957 52.5 26 TTAGAAC 20 0.0069420957 52.5 3 AATGGTC 20 0.0069420957 52.5 27 TACATTG 20 0.0069420957 52.5 5 GCGGAAT 20 0.0069420957 52.5 19 CGTCTTC 3000 0.0 52.03333 48 TATGCCG 3035 0.0 51.89456 43 CGTATGC 3050 0.0 51.86885 41 TCGTATG 3045 0.0 51.839077 40 CCGTCTT 3020 0.0 51.804634 47 ATGCCGT 3035 0.0 51.77924 44 GTATGCC 3050 0.0 51.754097 42 TCTCGTA 2995 0.0 51.652752 38 ATCTCGT 3000 0.0 51.56666 37 TCTTCTG 3035 0.0 51.5486 50 >>END_MODULE