##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779707_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 112855 Sequences flagged as poor quality 0 Sequence length 76 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 26.9797350582606 32.0 21.0 34.0 12.0 34.0 2 26.18615923087147 31.0 21.0 34.0 12.0 34.0 3 25.47183554118116 31.0 21.0 34.0 11.0 34.0 4 26.829303088033317 32.0 21.0 34.0 12.0 34.0 5 26.692481502813344 32.0 21.0 34.0 11.0 34.0 6 28.426582783217402 34.0 21.0 38.0 11.0 38.0 7 29.44923131451863 34.0 22.0 38.0 12.0 38.0 8 28.586371893137212 34.0 21.0 38.0 11.0 38.0 9 30.14502680430641 36.0 25.0 38.0 12.0 38.0 10-11 29.59281378760356 36.0 22.0 38.0 11.0 38.0 12-13 29.19311505914669 35.0 22.0 38.0 11.0 38.0 14-15 28.718395285986446 34.0 21.0 38.0 11.0 38.0 16-17 28.554020645961632 33.5 22.0 37.5 11.0 38.0 18-19 29.09171946302778 34.0 21.5 38.0 11.0 38.0 20-21 28.09264986044039 32.5 21.5 37.5 11.0 38.0 22-23 28.13282973727349 33.0 16.5 37.5 11.0 38.0 24-25 28.838939346949626 34.0 21.5 37.5 11.0 38.0 26-27 27.676390058039075 32.5 16.0 37.5 11.0 38.0 28-29 29.220322537769704 35.0 21.0 38.0 11.0 38.0 30-31 29.659509990696023 36.0 22.0 38.0 11.0 38.0 32-33 29.78618138319082 36.0 22.0 38.0 11.0 38.0 34-35 29.826742279916708 36.0 22.0 38.0 11.0 38.0 36-37 28.34564706924815 32.5 21.5 38.0 11.0 38.0 38-39 27.272340614062294 31.0 21.0 37.0 11.0 38.0 40-41 27.692326436577908 32.5 21.0 37.0 11.0 38.0 42-43 28.502410172345044 33.5 21.5 37.5 11.0 38.0 44-45 29.885109210934385 36.0 23.0 38.0 11.0 38.0 46-47 28.812112888219396 34.5 22.0 38.0 11.0 38.0 48-49 28.18001417748438 32.5 16.0 37.5 11.0 38.0 50-51 26.594280271144388 29.0 11.0 37.0 11.0 38.0 52-53 28.929387266846838 35.0 21.0 37.5 11.0 38.0 54-55 28.279451508572947 33.0 21.0 38.0 11.0 38.0 56-57 28.65391431482876 35.0 22.0 38.0 11.0 38.0 58-59 29.438943777413495 35.5 21.5 38.0 11.0 38.0 60-61 29.937747552168712 37.0 23.0 38.0 11.0 38.0 62-63 29.879907846351514 36.5 22.5 38.0 11.0 38.0 64-65 29.62499224668823 36.5 22.0 38.0 11.0 38.0 66-67 28.134641796996146 34.0 21.0 38.0 11.0 38.0 68-69 28.078109078020468 34.0 21.0 38.0 11.0 38.0 70-71 27.746931903770324 32.5 20.5 37.5 11.0 38.0 72-73 26.78716051570599 29.5 15.0 37.0 11.0 38.0 74-75 28.12867839262771 33.5 20.5 37.5 11.0 38.0 76 28.32130610074875 34.0 21.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 3 3.0 4 1.0 5 0.0 6 0.0 7 3.0 8 0.0 9 0.0 10 1.0 11 15.0 12 78.0 13 411.0 14 1086.0 15 1853.0 16 3003.0 17 4681.0 18 6155.0 19 6330.0 20 5630.0 21 4190.0 22 3098.0 23 2494.0 24 2083.0 25 1951.0 26 2027.0 27 2158.0 28 2395.0 29 2813.0 30 3355.0 31 4112.0 32 5018.0 33 6782.0 34 9077.0 35 11674.0 36 13235.0 37 7143.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.59443533737982 17.342607771033627 12.625935935492446 36.4370209560941 2 17.721855478268576 16.149926897346152 42.69017766160117 23.438039962784103 3 17.938380016481617 15.205621472180624 40.258566453705264 26.597432057632496 4 14.00735457002348 20.321651676930575 30.096141065969604 35.57485268707634 5 13.929378405919099 25.727703690576405 41.458508705861504 18.88440919764299 6 25.288201674715342 32.411501484205395 17.029817021842184 25.270479819237075 7 25.14376855256745 22.169155110540075 20.23215630676532 32.454920030127155 8 20.93967106195945 31.86232808733872 19.001665957748475 28.196334892953352 9 20.7580107755565 14.095952077130299 19.755777683255353 45.39025946405785 10-11 23.371260456543315 21.707518077413866 28.09442790301999 26.82679356302283 12-13 22.009198376548568 16.79501267213725 31.21422115094908 29.9815678003651 14-15 24.309260079751883 21.156845369960124 23.08019494904741 31.453699601240587 16-17 27.07244989742431 19.072432173762778 24.3687053308343 29.486412597978617 18-19 21.565482467411627 18.738646131487766 28.766382801492284 30.92948859960832 20-21 26.848061108748052 18.781901318587835 25.08329788742379 29.28673968524032 22-23 28.019850237050818 17.803624440604366 24.742345695422927 29.434179626921885 24-25 22.107221976074435 23.031900753212227 21.879042977403635 32.9818342933097 26-27 25.641218769799252 22.235415568246765 24.57787446334342 27.545491198610563 28-29 23.49201144892733 22.446366383397283 24.570886760183964 29.490735407491425 30-31 22.922832887297734 21.999007496942735 25.45150027471067 29.62665934104886 32-33 23.5729635127052 21.341190544761737 25.541106360353577 29.544739582179492 34-35 23.253062761691666 21.59950375506768 25.457808103856976 29.68962537938368 36-37 26.27728817464432 17.997899801943348 30.222470346887143 25.50234167652519 38-39 25.90290178076911 16.489505469916566 34.45715121250925 23.150441536805072 40-41 24.328731191180903 22.266185775304397 24.7412402743562 28.6638427591585 42-43 19.501021262643942 22.986163109600753 27.400853341367558 30.111962286387744 44-45 19.643498026079676 19.374105532736948 30.490976680712294 30.491419760471082 46-47 25.234386076846732 18.479724939741953 28.30488799092585 27.981000992485466 48-49 24.561799943286545 19.29276548986247 30.046168297178504 26.099266269672476 50-51 30.59735219055721 17.48192258613356 28.347866156245573 23.57285906706366 52-53 18.828205309985467 21.519974478040478 29.47077381163376 30.181046400340293 54-55 23.76800035446852 19.813460942000088 27.132349683193763 29.286189020337634 56-57 24.05171535288462 20.300225523600226 26.267517955488994 29.38054116802616 58-59 19.63481042664528 22.202480382469837 28.286019380480393 29.87668981040449 60-61 19.395016216791024 20.505379012104992 28.028906651542812 32.07069811956117 62-63 19.275469557935406 22.267613684196537 27.619621517916087 30.837295239951967 64-65 19.83641712746349 23.370374308804763 26.484297462072874 30.308911101658868 66-67 18.244455767995216 27.870261647872034 21.257504929437047 32.627777654695706 68-69 18.723491009657362 27.545860276291823 21.69515713709552 32.035491576955295 70-71 18.757947813603558 28.261206694108314 21.14351037480449 31.83733511748364 72-73 18.06005396615817 29.519665746554008 20.543915071977032 31.87636521531079 74-75 20.1399227279172 25.661952360697576 24.338047639302424 29.8600772720828 76 20.26673756037042 24.759626035712703 25.11232221188356 29.861314192033323 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.0 4 2.0 5 1.0 6 1.0 7 1.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 0.0 14 1.0 15 3.0 16 3.5 17 3.0 18 6.5 19 10.0 20 21.0 21 32.0 22 35.5 23 61.0 24 107.5 25 132.0 26 172.0 27 265.5 28 376.0 29 433.0 30 532.0 31 760.0 32 1048.5 33 1208.0 34 1340.0 35 1720.5 36 2204.0 37 2439.0 38 2740.5 39 3347.5 40 3951.0 41 4564.5 42 4880.0 43 4948.5 44 5241.5 45 5519.5 46 5573.0 47 5636.0 48 5575.5 49 5227.5 50 5003.0 51 4866.5 52 4498.5 53 4089.5 54 3912.0 55 3784.0 56 3529.0 57 3242.5 58 3083.0 59 3053.5 60 2939.5 61 2850.0 62 2845.0 63 2743.5 64 2586.5 65 2415.5 66 2256.5 67 2213.0 68 2139.0 69 2008.0 70 1878.0 71 1805.0 72 1692.0 73 1532.0 74 1346.5 75 1208.0 76 1046.0 77 865.5 78 710.0 79 573.0 80 484.0 81 333.5 82 226.5 83 181.0 84 140.0 85 74.5 86 42.0 87 34.0 88 26.0 89 16.5 90 9.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0017721855478268576 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0062026494173940015 9 0.0062026494173940015 10-11 0.0062026494173940015 12-13 0.007974834965220858 14-15 0.004430463869567144 16-17 0.010190066900004431 18-19 0.00708874219130743 20-21 0.0062026494173940015 22-23 0.008860927739134288 24-25 0.004430463869567144 26-27 0.0031013247086970007 28-29 0.005316556643480573 30-31 0.007974834965220858 32-33 0.006645695804350716 34-35 0.006645695804350716 36-37 0.007531788578264144 38-39 0.009303974126091002 40-41 0.007974834965220858 42-43 0.003987417482610429 44-45 0.007531788578264144 46-47 0.0062026494173940015 48-49 0.0062026494173940015 50-51 0.0062026494173940015 52-53 0.009747020513047717 54-55 0.008860927739134288 56-57 0.005759603030437287 58-59 0.008417881352177574 60-61 0.007974834965220858 62-63 0.008417881352177574 64-65 0.0062026494173940015 66-67 0.01107615967391786 68-69 0.03500066456958044 70-71 0.008417881352177574 72-73 0.005759603030437287 74-75 0.0062026494173940015 76 0.008860927739134288 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 112855.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 96.58334362436415 #Duplication Level Percentage of deduplicated Percentage of total 1 97.32563357244038 94.00035110785961 2 2.0941707358644575 4.045240235801688 3 0.40921791320513184 1.185709029850094 4 0.10098930085273472 0.39015537386575877 5 0.04299300773746589 0.20762042198763073 6 0.018996814783688712 0.11008655340128447 7 0.003999327641069977 0.027038790507671547 8 0.0019996637412118775 0.01545073682005187 9 9.998318670853333E-4 0.00869103943067631 >10 9.99831866772851E-4 0.009656710475511174 >50 0.0 0.0 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 8.860927739134288E-4 0.0 2 0.0 0.0 0.0 0.0026582783217402864 0.0 3 0.0 0.0 0.0 0.0026582783217402864 0.0 4 0.0 0.0 0.0 0.005316556643480573 0.0 5 0.0 0.0 0.0 0.009747020513047716 0.0 6 0.0 0.0 0.0 0.010633113286961145 0.0 7 0.0 0.0 0.0 0.010633113286961145 0.0 8 0.0 0.0 0.0 0.010633113286961145 0.0 9 0.0 0.0 0.0 0.012405298834788003 0.0 10 0.0 0.0 0.0 0.012405298834788003 0.0 11 0.0 0.0 0.0 0.012405298834788003 0.0 12 0.0 0.0 0.0 0.013291391608701431 0.0 13 0.0 0.0 0.0 0.013291391608701431 0.0 14 0.0 0.0 0.0 0.013291391608701431 0.0 15 0.0 0.0 0.0 0.013291391608701431 0.0 16 0.0 0.0 0.0 0.013291391608701431 0.0 17 0.0 0.0 0.0 0.013291391608701431 0.0 18 0.0 0.0 0.0 0.016835762704355144 0.0 19 0.0 0.0 0.0 0.02126622657392229 0.0 20 0.0 0.0 0.0 0.025696690443489434 0.0 21 0.0 0.0 0.0 0.026582783217402862 0.0 22 0.0 0.0 0.0 0.04430463869567144 0.0 23 0.0 0.0 0.0 0.04607682424349829 0.0 24 0.0 0.0 0.0 0.05493775198263258 0.0 25 0.0 0.0 0.0 0.05759603030437287 0.0 26 0.0 0.0 0.0 0.06822914359133402 0.0 27 0.0 0.0 0.0 0.10455894732178458 0.0 28 0.0 0.0 0.0 0.15063577156528288 0.0 29 0.0 0.0 0.0 0.1851933897479066 0.0 30 0.0 0.0 0.0 0.24278942005227946 0.0 31 0.0 0.0 0.0 0.2773470382349032 0.0 32 0.0 0.0 0.0 0.3172212130610075 0.0 33 0.0 0.0 0.0 0.3987417482610429 0.0 34 0.0 0.0 0.0 0.48203446900890523 0.0 35 0.0 0.0 0.0 0.6822914359133401 0.0 36 0.0 0.0 0.0 0.8320411147047095 0.0 37 0.0 0.0 0.0 1.2352133268353196 0.0 38 0.0 0.0 0.0 1.5781312303398165 0.0 39 0.0 0.0 0.0 2.0247219883921845 0.0 40 0.0 0.0 0.0 2.497009436888042 0.0 41 0.0 0.0 0.0 2.9028399273403926 0.0 42 0.0 0.0 0.0 3.304239953923176 0.0 43 0.0 0.0 0.0 3.715387001019007 0.0 44 0.0 0.0 0.0 4.266536706393159 0.0 45 0.0 0.0 0.0 4.627176465375925 0.0 46 0.0 0.0 0.0 5.003765894289132 0.0 47 0.0 0.0 0.0 5.4840281777502105 0.0 48 0.0 0.0 0.0 5.830490452350361 0.0 49 0.0 0.0 0.0 6.1140401400026585 0.0 50 0.0 0.0 0.0 6.480882548402818 0.0 51 0.0 0.0 0.0 6.941650790837801 0.0 52 0.0 0.0 0.0 7.296973993177086 0.0 53 0.0 0.0 0.0 7.740906472907714 0.0 54 0.0 0.0 0.0 8.185725045412255 0.0 55 0.0 0.0 0.0 8.497629701829782 0.0 56 0.0 0.0 0.0 8.864472110229942 0.0 57 0.0 0.0 0.0 9.135616499047451 0.0 58 0.0 0.0 0.0 9.38106419742147 0.0 59 0.0 0.0 0.0 9.677905276682468 0.0 60 0.0 0.0 0.0 9.872845686943423 0.0 61 0.0 0.0 0.0 10.053608612821762 0.0 62 0.0 0.0 0.0 10.192725178326171 0.0 63 0.0 0.0 0.0 10.400956980195826 0.0 64 0.0 0.0 0.0 10.611847060387223 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTACGA 90 0.0 54.437206 21 CTGTGTA 45 2.6771886E-8 54.437206 34 AGATATC 20 0.0069395304 52.493023 40 AAATACC 20 0.0069395304 52.493023 46 GCGGTAT 20 0.0069395304 52.493023 54 ACTCTCG 20 0.0069395304 52.493023 41 ATTCGTG 20 0.0069395304 52.493023 32 TCGGTGG 140 0.0 52.493023 45 TACACGC 20 0.0069395304 52.493023 41 AGTGTTG 20 0.0069395304 52.493023 35 CGAAGTG 40 7.430626E-7 52.493023 32 TCTCGGT 110 0.0 50.90233 43 CTCGGTG 140 0.0 49.993355 44 CGGTGGT 120 0.0 49.576744 46 CCGTATC 85 0.0 49.405197 55 AGATCTC 115 0.0 48.689182 40 CGTGTAG 95 0.0 47.88837 35 TAGATCT 170 0.0 47.34665 39 GCGTGTA 30 5.8606075E-4 46.660465 34 CGATCCA 30 5.8606075E-4 46.660465 25 >>END_MODULE