##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779706_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5910 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.02165820642978 34.0 34.0 34.0 31.0 34.0 2 33.256345177664976 34.0 34.0 34.0 33.0 34.0 3 33.306598984771576 34.0 34.0 34.0 33.0 34.0 4 33.39932318104907 34.0 34.0 34.0 34.0 34.0 5 33.32351945854484 34.0 34.0 34.0 34.0 34.0 6 36.62318104906937 38.0 37.0 38.0 34.0 38.0 7 36.66717428087986 38.0 37.0 38.0 34.0 38.0 8 36.23688663282572 38.0 37.0 38.0 34.0 38.0 9 36.126565143824024 38.0 37.0 38.0 33.0 38.0 10-11 36.19137055837563 38.0 37.0 38.0 34.0 38.0 12-13 36.18350253807107 38.0 37.0 38.0 33.5 38.0 14-15 36.25372250423012 38.0 37.0 38.0 34.0 38.0 16-17 36.07267343485618 38.0 36.5 38.0 33.0 38.0 18-19 36.1906937394247 38.0 37.0 38.0 34.0 38.0 20-21 36.24839255499154 38.0 37.0 38.0 34.0 38.0 22-23 35.97098138747885 38.0 36.0 38.0 32.0 38.0 24-25 36.01446700507614 38.0 36.0 38.0 32.0 38.0 26-27 35.810152284263964 38.0 36.0 38.0 31.5 38.0 28-29 35.813705583756345 38.0 36.0 38.0 31.5 38.0 30-31 35.77351945854484 38.0 36.0 38.0 31.0 38.0 32-33 35.616243654822334 38.0 36.0 38.0 31.0 38.0 34-35 35.40803722504231 38.0 36.0 38.0 31.0 38.0 36-37 35.535702199661586 38.0 36.0 38.0 31.0 38.0 38-39 35.5821489001692 38.0 36.0 38.0 31.0 38.0 40-41 35.755583756345175 38.0 36.0 38.0 31.0 38.0 42-43 35.813705583756345 38.0 36.0 38.0 31.0 38.0 44-45 35.716751269035534 38.0 36.0 38.0 31.0 38.0 46-47 35.818697123519456 38.0 36.0 38.0 31.5 38.0 48-49 35.78925549915398 38.0 36.0 38.0 31.0 38.0 50-51 35.76370558375635 38.0 36.0 38.0 31.0 38.0 52-53 35.669373942470386 38.0 36.0 38.0 31.0 38.0 54-55 35.694500846023686 38.0 36.0 38.0 31.0 38.0 56-57 35.542301184433164 38.0 36.0 38.0 31.0 38.0 58-59 35.516497461928935 38.0 36.0 38.0 31.0 38.0 60-61 35.593993231810494 38.0 36.0 38.0 31.0 38.0 62-63 35.50262267343486 38.0 36.0 38.0 30.0 38.0 64-65 35.50050761421319 38.0 36.0 38.0 31.0 38.0 66-67 35.469373942470384 38.0 36.0 38.0 31.0 38.0 68-69 35.05143824027073 38.0 36.0 38.0 27.0 38.0 70-71 34.41522842639594 37.0 34.5 38.0 24.0 38.0 72-73 34.11793570219966 38.0 34.5 38.0 23.0 38.0 74-75 33.98485617597292 38.0 35.0 38.0 22.0 38.0 76 32.783756345177665 37.0 32.0 38.0 19.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 1.0 22 0.0 23 2.0 24 7.0 25 6.0 26 14.0 27 20.0 28 45.0 29 74.0 30 125.0 31 187.0 32 255.0 33 471.0 34 678.0 35 947.0 36 1350.0 37 1727.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 38.95093062605753 21.489001692047378 12.284263959390863 27.275803722504232 2 20.812182741116754 20.473773265651438 37.055837563451774 21.658206429780034 3 21.04906937394247 26.091370558375637 31.40439932318105 21.455160744500844 4 16.26057529610829 19.72927241962775 35.465313028764804 28.544839255499156 5 14.111675126903553 37.64805414551608 34.331641285956 13.908629441624365 6 30.4906937394247 35.90524534686971 17.225042301184434 16.37901861252115 7 27.123519458544838 31.201353637901864 21.43824027072758 20.23688663282572 8 24.450084602368864 36.73434856175973 18.934010152284266 19.88155668358714 9 24.85617597292724 19.18781725888325 18.883248730964468 37.07275803722504 10-11 26.16751269035533 24.864636209813877 26.979695431472084 21.988155668358715 12-13 26.785109983079526 20.956006768189507 26.692047377326567 25.566835871404397 14-15 25.95600676818951 23.494077834179357 21.328257191201352 29.22165820642978 16-17 26.328257191201352 27.335025380710658 21.82741116751269 24.509306260575293 18-19 25.389170896785114 25.922165820642977 22.87648054145516 25.81218274111675 20-21 24.84771573604061 25.033840947546533 21.869712351945854 28.248730964467008 22-23 26.159052453468696 26.505922165820646 22.411167512690355 24.923857868020306 24-25 26.243654822335028 28.883248730964468 22.284263959390863 22.588832487309645 26-27 25.558375634517766 27.292724196277497 24.966159052453467 22.18274111675127 28-29 23.78172588832487 23.8917089678511 28.527918781725887 23.79864636209814 30-31 24.78849407783418 23.874788494077833 28.722504230118446 22.614213197969544 32-33 25.77834179357022 24.9746192893401 26.057529610829107 23.189509306260575 34-35 24.56006768189509 25.338409475465312 26.489001692047374 23.612521150592215 36-37 23.59560067681895 27.622673434856175 25.63451776649746 23.14720812182741 38-39 23.900169204737733 23.705583756345177 27.614213197969544 24.780033840947546 40-41 24.67005076142132 23.485617597292723 27.53807106598985 24.306260575296108 42-43 25.659898477157363 23.637901861252114 28.570219966159055 22.131979695431472 44-45 24.179357021996616 24.864636209813877 27.258883248730964 23.697123519458547 46-47 26.16751269035533 23.705583756345177 25.77834179357022 24.34856175972927 48-49 26.70896785109983 23.189509306260575 25.820642978003384 24.28087986463621 50-51 23.883248730964468 23.824027072758035 27.55499153976311 24.737732656514382 52-53 25.118443316412858 22.292724196277497 30.135363790186126 22.45346869712352 54-55 24.61082910321489 22.808798646362096 28.561759729272417 24.018612521150594 56-57 25.219966159052454 23.993231810490695 26.59052453468697 24.196277495769884 58-59 25.18612521150592 24.78849407783418 28.50253807106599 21.522842639593907 60-61 24.4585448392555 29.19627749576988 25.304568527918782 21.04060913705584 62-63 22.825719120135364 32.165820642978005 24.78849407783418 20.21996615905245 64-65 22.2419627749577 33.04568527918782 23.41793570219966 21.294416243654823 66-67 22.106598984771576 33.03722504230118 23.73942470389171 21.116751269035532 68-69 22.851099830795263 32.85109983079526 22.436548223350254 21.86125211505922 70-71 23.071065989847718 31.082910321489 24.526226734348562 21.31979695431472 72-73 21.97969543147208 29.991539763113366 24.585448392554994 23.44331641285956 74-75 22.978003384094755 29.13705583756345 24.28087986463621 23.604060913705585 76 22.84263959390863 28.40947546531303 24.703891708967852 24.04399323181049 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.5 17 1.0 18 1.5 19 5.0 20 8.5 21 9.0 22 12.5 23 19.0 24 16.0 25 10.0 26 20.5 27 33.0 28 39.5 29 44.0 30 63.0 31 86.0 32 94.5 33 99.0 34 110.0 35 153.0 36 180.5 37 176.0 38 211.5 39 289.5 40 362.0 41 407.5 42 423.0 43 381.5 44 346.0 45 315.5 46 279.0 47 271.5 48 249.0 49 229.5 50 225.0 51 200.5 52 157.0 53 135.0 54 132.0 55 122.5 56 108.5 57 96.0 58 88.0 59 91.0 60 81.0 61 70.0 62 72.0 63 78.0 64 75.0 65 76.0 66 85.0 67 84.0 68 81.5 69 79.0 70 72.5 71 66.0 72 75.5 73 75.5 74 58.0 75 50.0 76 46.5 77 46.0 78 35.5 79 22.0 80 21.0 81 15.5 82 8.5 83 6.0 84 4.5 85 4.5 86 3.5 87 1.0 88 0.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 5910.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 75.58375634517766 #Duplication Level Percentage of deduplicated Percentage of total 1 82.89679874636221 62.656514382402705 2 11.55137676292814 17.461928934010153 3 3.8728453100514884 8.781725888324873 4 0.8282963957913588 2.504230118443316 5 0.31340944705618984 1.1844331641285957 6 0.24625027982986344 1.116751269035533 7 0.08954555630176853 0.47377326565143824 8 0.02238638907544213 0.1353637901861252 9 0.02238638907544213 0.15228426395939085 >10 0.11193194537721066 1.8781725888324874 >50 0.02238638907544213 1.3705583756345179 >100 0.02238638907544213 2.284263959390863 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT 135 2.284263959390863 No Hit ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT 81 1.3705583756345179 RNA PCR Primer, Index 48 (95% over 23bp) CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 43 0.727580372250423 RNA PCR Primer, Index 48 (95% over 21bp) CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 26 0.4399323181049069 No Hit TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 20 0.338409475465313 No Hit TTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC 12 0.20304568527918782 No Hit TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 10 0.1692047377326565 No Hit CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG 9 0.15228426395939085 No Hit GGGTTAGGATGAGTGGGAAGAAGAAAGAGAGGAAGTAAAGTTTAATTATG 8 0.1353637901861252 No Hit ATGCTACAGGGATGAATATTATGGAGAAGTAGTCTAGTTTGAAGCTTAGG 7 0.11844331641285956 No Hit ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT 7 0.11844331641285956 Illumina PCR Primer Index 10 (95% over 23bp) ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT 7 0.11844331641285956 RNA PCR Primer, Index 15 (95% over 21bp) GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGT 7 0.11844331641285956 No Hit GTAAAATAGAGACCCAGTAAAATTGTAATAAGCAGTGCTTGAATTATTTG 6 0.10152284263959391 No Hit ATCGTGATGTCTTATTTAAGGGGAACGTGTGGGCTATTTAGGCTTTATGA 6 0.10152284263959391 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAACCTCGTATGCCGT 6 0.10152284263959391 No Hit GTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAGTGAA 6 0.10152284263959391 No Hit CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT 6 0.10152284263959391 No Hit ACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTTCT 6 0.10152284263959391 RNA PCR Primer, Index 48 (96% over 25bp) GTTAGGGGTCATGGGCTGGGTTTTACTATATGATAGGCATGTGATTGGTG 6 0.10152284263959391 No Hit ACCTAAACCTACTCCAATGCTAAAACTAATCGTCCCAACAATTATATTAC 6 0.10152284263959391 No Hit GGACTAGGATGATGGCGGGCAGGATAGTTCAGACGGTTTCTATTTCCTGA 6 0.10152284263959391 No Hit CTATAAAAGCTATTGTGTAAGCTAGTCATATTAAGTTGTTGGCTCAGGAG 6 0.10152284263959391 No Hit TCTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC 6 0.10152284263959391 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.01692047377326565 0.0 20 0.0 0.0 0.0 0.01692047377326565 0.0 21 0.0 0.0 0.0 0.0338409475465313 0.0 22 0.0 0.0 0.0 0.0338409475465313 0.0 23 0.0 0.0 0.0 0.0338409475465313 0.0 24 0.0 0.0 0.0 0.0338409475465313 0.0 25 0.0 0.0 0.0 0.0338409475465313 0.0 26 0.0 0.0 0.0 0.0338409475465313 0.0 27 0.0 0.0 0.0 0.0338409475465313 0.0 28 0.0 0.0 0.0 0.0676818950930626 0.0 29 0.0 0.0 0.0 0.10152284263959391 0.0 30 0.0 0.0 0.0 0.11844331641285956 0.0 31 0.0 0.0 0.0 0.1353637901861252 0.0 32 0.0 0.0 0.0 0.15228426395939088 0.0 33 0.0 0.0 0.0 0.1692047377326565 0.0 34 0.0 0.0 0.0 0.20304568527918782 0.0 35 0.0 0.0 0.0 0.25380710659898476 0.0 36 0.0 0.0 0.0 0.338409475465313 0.0 37 0.0 0.0 0.0 0.43993231810490696 0.0 38 0.0 0.0 0.0 0.5245346869712352 0.0 39 0.0 0.0 0.0 0.676818950930626 0.0 40 0.0 0.0 0.0 0.7783417935702199 0.0 41 0.0 0.0 0.0 0.8629441624365483 0.0 42 0.0 0.0 0.0 0.9475465313028765 0.0 43 0.0 0.0 0.0 0.9983079526226735 0.0 44 0.0 0.0 0.0 1.0998307952622672 0.0 45 0.0 0.0 0.0 1.2351945854483926 0.0 46 0.0 0.0 0.0 1.2859560067681894 0.0 47 0.0 0.0 0.0 1.3705583756345177 0.0 48 0.0 0.0 0.0 1.5228426395939085 0.0 49 0.0 0.0 0.0 1.6751269035532994 0.0 50 0.0 0.0 0.0 1.6920473773265652 0.0 51 0.0 0.0 0.0 1.7597292724196278 0.0 52 0.0 0.0 0.0 1.8781725888324874 0.0 53 0.0 0.0 0.0 2.047377326565144 0.0 54 0.0 0.0 0.0 2.1489001692047376 0.0 55 0.0 0.0 0.0 2.3011844331641287 0.0 56 0.0 0.0 0.0 2.470389170896785 0.0 57 0.0 0.0 0.0 2.6226734348561758 0.0 58 0.0 0.0 0.0 2.72419627749577 0.0 59 0.0 0.0 0.0 2.808798646362098 0.0 60 0.0 0.0 0.0 2.9272419627749575 0.0 61 0.0 0.0 0.0 3.1472081218274113 0.0 62 0.0 0.0 0.0 3.299492385786802 0.0 63 0.0 0.0 0.0 3.451776649746193 0.0 64 0.0 0.0 0.0 3.6379018612521152 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGTTCT 15 0.002116507 70.0 12 AAGCGGG 15 0.002116507 70.0 64 TTTACAC 15 0.002116507 70.0 2 CTTTACA 20 0.006615848 52.500004 1 TTACACA 20 0.006615848 52.500004 3 CGTCAAT 55 5.638385E-6 38.18182 32 AATCTCG 55 5.638385E-6 38.18182 36 TTCGTCA 55 5.638385E-6 38.18182 30 GTCAATC 55 5.638385E-6 38.18182 33 CAATCTC 55 5.638385E-6 38.18182 35 TCAATCT 55 5.638385E-6 38.18182 34 TCGTCAA 55 5.638385E-6 38.18182 31 TTTCGTC 55 5.638385E-6 38.18182 29 AGACTTT 60 1.0246438E-5 35.0 25 CGAGACT 60 1.0246438E-5 35.0 23 GAGACTT 60 1.0246438E-5 35.0 24 ACTTTCG 65 1.7733984E-5 32.307693 27 TTGAAAA 65 1.7733984E-5 32.307693 58 CTTTCGT 65 1.7733984E-5 32.307693 28 ATCTCGT 70 2.9444078E-5 30.0 37 >>END_MODULE