##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1779705_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 15962 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.92757799774464 34.0 34.0 34.0 31.0 34.0 2 33.24138579125423 34.0 34.0 34.0 32.0 34.0 3 33.29845883974439 34.0 34.0 34.0 33.0 34.0 4 33.353652424508205 34.0 34.0 34.0 33.0 34.0 5 33.36555569477509 34.0 34.0 34.0 33.0 34.0 6 36.569101616338806 38.0 37.0 38.0 34.0 38.0 7 36.57524119784488 38.0 37.0 38.0 34.0 38.0 8 36.21388297205864 38.0 37.0 38.0 34.0 38.0 9 35.988034080942235 38.0 36.0 38.0 32.0 38.0 10-11 36.08438792131312 38.0 36.5 38.0 33.0 38.0 12-13 36.148195714822705 38.0 37.0 38.0 34.0 38.0 14-15 36.182151359478766 38.0 37.0 38.0 34.0 38.0 16-17 36.099642901892 38.0 36.5 38.0 33.0 38.0 18-19 36.151328154366624 38.0 36.5 38.0 33.5 38.0 20-21 36.168807167021676 38.0 37.0 38.0 34.0 38.0 22-23 35.978793384287684 38.0 36.0 38.0 32.0 38.0 24-25 35.983523367999 38.0 36.0 38.0 32.0 38.0 26-27 35.80315749906027 38.0 36.0 38.0 31.5 38.0 28-29 35.73903646159629 38.0 36.0 38.0 31.5 38.0 30-31 35.67651296829971 38.0 36.0 38.0 31.0 38.0 32-33 35.721463475754916 38.0 36.0 38.0 31.0 38.0 34-35 35.644499436160885 38.0 36.0 38.0 31.0 38.0 36-37 35.711533642400695 38.0 36.0 38.0 31.0 38.0 38-39 35.83194461846887 38.0 36.0 38.0 32.0 38.0 40-41 35.823455707304845 38.0 36.0 38.0 32.0 38.0 42-43 35.737156997869945 38.0 36.0 38.0 31.0 38.0 44-45 35.76747901265506 38.0 36.0 38.0 31.5 38.0 46-47 35.804473123668714 38.0 36.0 38.0 32.0 38.0 48-49 35.72519107881218 38.0 36.0 38.0 31.0 38.0 50-51 35.7952637514096 38.0 36.0 38.0 31.5 38.0 52-53 35.69778223280291 38.0 36.0 38.0 31.0 38.0 54-55 35.709027690765566 38.0 36.0 38.0 31.0 38.0 56-57 35.69571482270392 38.0 36.0 38.0 31.0 38.0 58-59 35.6995363989475 38.0 36.0 38.0 31.0 38.0 60-61 35.69800150357098 38.0 36.0 38.0 31.0 38.0 62-63 35.5746147099361 38.0 36.0 38.0 31.0 38.0 64-65 35.55785615837614 38.0 36.0 38.0 31.0 38.0 66-67 35.58072296704674 38.0 36.0 38.0 31.0 38.0 68-69 35.389894750031324 38.0 36.0 38.0 30.5 38.0 70-71 35.23449442425761 38.0 36.0 38.0 28.0 38.0 72-73 35.19443052249092 38.0 36.0 38.0 27.5 38.0 74-75 35.24220022553565 38.0 36.0 38.0 27.5 38.0 76 34.020924696153365 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 21 1.0 22 0.0 23 6.0 24 5.0 25 17.0 26 41.0 27 65.0 28 98.0 29 150.0 30 300.0 31 412.0 32 761.0 33 1072.0 34 1753.0 35 2571.0 36 3779.0 37 4931.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.525122165142214 23.956897631875705 13.218894875328907 23.299085327653177 2 20.755544417992734 22.503445683498306 35.3652424508207 21.37576744768826 3 19.9849642901892 25.498057887482773 30.99862172660068 23.518356095727352 4 16.420248089211878 18.675604560831978 39.30585139706804 25.59829595288811 5 15.561959654178676 37.48903646159629 34.168650545044486 12.780353339180554 6 31.91955895251222 35.910286931462224 17.942613707555445 14.227540408470116 7 28.924946748527752 30.32827966420248 23.173787745896504 17.572985841373264 8 24.971808044104748 36.16088209497556 19.790753038466356 19.076556822453327 9 26.29369753163764 18.694399198095475 21.682746522992105 33.32915674727478 10-11 26.826212254103492 25.66720962285428 26.917053000877083 20.589525122165142 12-13 26.992231549931084 22.819822077433905 26.133943114897885 24.054003257737126 14-15 25.316376393935595 24.339055256233554 22.860543791504824 27.484024558326027 16-17 25.538779601553692 27.81293071043729 24.48001503570981 22.16827465229921 18-19 24.664828968800904 26.35947876205989 26.1182809171783 22.857411351960906 20-21 23.781481017416365 26.841874451823077 25.952261621350708 23.42438290940985 22-23 24.758802155118406 27.54354090966044 25.826964039594035 21.870692895627116 24-25 25.181681493547174 27.496554316501694 25.620223029695527 21.70154116025561 26-27 24.126049367247212 28.395564465605815 26.41899511339431 21.059391053752663 28-29 25.350833228918685 26.757298584137324 26.76669590276908 21.125172284174916 30-31 25.10650294449317 26.82307981455958 26.87946372635008 21.19095351459717 32-33 24.364114772584887 27.806665831349452 26.240446059391054 21.588773336674603 34-35 25.601428392432023 26.32188948753289 26.995363989475003 21.08131813056008 36-37 24.611577496554315 26.747901265505575 26.957774714948002 21.682746522992105 38-39 23.703170028818445 26.788622979576495 27.33366746021802 22.174539531387044 40-41 24.032076180929707 25.98985089587771 27.913168775842628 22.064904147349957 42-43 24.82458338554066 25.789374765067034 28.188823455707308 21.197218393685002 44-45 23.759553940608946 26.72910662824208 27.596792381907033 21.91454704924195 46-47 25.037589274527 25.366495426638263 27.011026187194588 22.584889111640145 48-49 24.7024182433279 24.9812053627365 27.603057260994863 22.713319132940736 50-51 23.98195714822704 25.642150106502942 27.487156997869945 22.888735747400073 52-53 23.52148853527127 25.460468612955772 29.2695150983586 21.748527753414358 54-55 23.52148853527127 25.23493296579376 28.953138704423004 22.290439794511965 56-57 24.74627239694274 24.72434532013532 27.794136073173785 22.73524620974815 58-59 23.869189324646033 25.98045357724596 28.621100112767824 21.529256985340183 60-61 23.83473248966295 27.80353339180554 27.15511840621476 21.20661571231675 62-63 22.42513469490039 29.02518481393309 26.826212254103492 21.723468237063024 64-65 22.437664453076057 29.689261997243456 26.12767823581005 21.745395313870443 66-67 22.750908407467733 29.100363362987093 26.5286304974314 21.62009773211377 68-69 22.46272396942739 29.77697030447312 25.952261621350708 21.808044104748777 70-71 22.89186818694399 29.16301215386543 25.98671845633379 21.958401202856784 72-73 22.71958401202857 27.816063149981208 26.278035333918055 23.18631750407217 74-75 22.920060142839244 27.734619721839373 26.619471244204984 22.725848891116403 76 22.99837113143716 27.922566094474377 25.836361358225783 23.242701415862673 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 0.5 2 0.0 3 0.0 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 1.0 16 0.0 17 0.0 18 3.0 19 6.0 20 8.0 21 10.0 22 13.5 23 23.5 24 46.5 25 63.0 26 77.0 27 101.0 28 140.5 29 170.0 30 198.5 31 227.5 32 277.0 33 326.0 34 396.0 35 458.0 36 517.0 37 584.0 38 648.0 39 764.5 40 910.0 41 989.5 42 976.0 43 1049.5 44 1084.5 45 1013.0 46 980.0 47 892.5 48 793.5 49 740.5 50 699.0 51 646.5 52 531.5 53 414.5 54 360.0 55 356.0 56 314.0 57 255.5 58 235.0 59 210.5 60 180.5 61 157.0 62 139.0 63 138.0 64 138.0 65 132.0 66 127.5 67 130.0 68 133.5 69 116.5 70 100.5 71 105.0 72 105.0 73 101.5 74 89.5 75 81.0 76 78.5 77 73.5 78 63.0 79 55.0 80 45.0 81 25.5 82 17.0 83 18.0 84 14.5 85 7.5 86 2.5 87 1.0 88 2.0 89 1.5 90 0.5 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 15962.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 71.00613958150608 #Duplication Level Percentage of deduplicated Percentage of total 1 77.58073054526204 55.08708181932088 2 14.425622022233986 20.486154617215888 3 4.482089288865361 9.547675729858414 4 1.738133050997 4.93672472121288 5 0.7323098641256397 2.599924821450946 6 0.4411505205576143 1.8794637263500815 7 0.2823363331568731 1.4033329156747276 8 0.09705311452267514 0.5513093597293572 9 0.044115052055761425 0.28191955895251225 >10 0.15881418740074113 1.7980202982082447 >50 0.008823010411152285 0.5325147224658564 >100 0.008823010411152285 0.8958777095602055 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT 143 0.8958777095602055 No Hit ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT 85 0.5325147224658564 TruSeq Adapter, Index 2 (95% over 21bp) CTTTACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 48 0.30071419621601303 No Hit CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC 34 0.21300588898634257 No Hit TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC 26 0.16288685628367372 No Hit TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG 17 0.10650294449317128 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.006264879087833605 0.0 5 0.0 0.0 0.0 0.006264879087833605 0.0 6 0.0 0.0 0.0 0.006264879087833605 0.0 7 0.0 0.0 0.0 0.006264879087833605 0.0 8 0.0 0.0 0.0 0.006264879087833605 0.0 9 0.0 0.0 0.0 0.006264879087833605 0.0 10 0.0 0.0 0.0 0.006264879087833605 0.0 11 0.0 0.0 0.0 0.006264879087833605 0.0 12 0.0 0.0 0.0 0.006264879087833605 0.0 13 0.0 0.0 0.0 0.006264879087833605 0.0 14 0.0 0.0 0.0 0.006264879087833605 0.0 15 0.0 0.0 0.0 0.006264879087833605 0.0 16 0.0 0.0 0.0 0.006264879087833605 0.0 17 0.0 0.0 0.0 0.006264879087833605 0.0 18 0.0 0.0 0.0 0.006264879087833605 0.0 19 0.0 0.0 0.0 0.018794637263500814 0.0 20 0.0 0.0 0.0 0.018794637263500814 0.0 21 0.0 0.0 0.0 0.018794637263500814 0.0 22 0.0 0.0 0.0 0.018794637263500814 0.0 23 0.0 0.0 0.0 0.02505951635133442 0.0 24 0.0 0.0 0.0 0.02505951635133442 0.0 25 0.0 0.0 0.0 0.02505951635133442 0.0 26 0.0 0.0 0.0 0.02505951635133442 0.0 27 0.0 0.0 0.0 0.02505951635133442 0.0 28 0.0 0.0 0.0 0.02505951635133442 0.0 29 0.0 0.0 0.0 0.02505951635133442 0.0 30 0.0 0.0 0.0 0.02505951635133442 0.0 31 0.0 0.0 0.0 0.02505951635133442 0.0 32 0.0 0.0 0.0 0.02505951635133442 0.0 33 0.0 0.0 0.0 0.03758927452700163 0.0 34 0.0 0.0 0.0 0.05638391179050244 0.0 35 0.0 0.0 0.0 0.07517854905400326 0.0 36 0.0 0.0 0.0 0.1252975817566721 0.0 37 0.0 0.0 0.0 0.22553564716200977 0.0 38 0.0 0.0 0.0 0.2819195589525122 0.0 39 0.0 0.0 0.0 0.3758927452700163 0.0 40 0.0 0.0 0.0 0.46360105249968675 0.0 41 0.0 0.0 0.0 0.5513093597293572 0.0 42 0.0 0.0 0.0 0.6390176669590277 0.0 43 0.0 0.0 0.0 0.8457586768575367 0.0 44 0.0 0.0 0.0 0.9898508958777096 0.0 45 0.0 0.0 0.0 1.1527377521613833 0.0 46 0.0 0.0 0.0 1.3720085202355594 0.0 47 0.0 0.0 0.0 1.572484651046235 0.0 48 0.0 0.0 0.0 1.854404209998747 0.0 49 0.0 0.0 0.0 2.0047613081067537 0.0 50 0.0 0.0 0.0 2.2804159879714323 0.0 51 0.0 0.0 0.0 2.53727603057261 0.0 52 0.0 0.0 0.0 2.769076556822453 0.0 53 0.0 0.0 0.0 3.057260994862799 0.0 54 0.0 0.0 0.0 3.376769828342313 0.0 55 0.0 0.0 0.0 3.7150732990853275 0.0 56 0.0 0.0 0.0 3.9844630998621726 0.0 57 0.0 0.0 0.0 4.2789124169903525 0.0 58 0.0 0.0 0.0 4.485653426888861 0.0 59 0.0 0.0 0.0 4.755043227665706 0.0 60 0.0 0.0 0.0 5.011903270266884 0.0 61 0.0 0.0 0.0 5.293822829219396 0.0 62 0.0 0.0 0.0 5.538153113644906 0.0 63 0.0 0.0 0.0 5.832602430773086 0.0 64 0.0 0.0 0.0 6.101992231549931 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCAGGGG 15 0.0021847868 70.00001 8 TCTAGAG 20 0.0068276366 52.5 3 ATTGAAG 20 0.0068276366 52.5 57 TCGTATG 90 5.691105E-6 27.222221 40 CTCGTAT 90 5.691105E-6 27.222221 39 TGAAAAA 105 6.1016726E-7 26.666666 59 GCACGTA 80 8.1566235E-5 26.25 31 ACGAGCA 80 8.1566235E-5 26.25 27 GACGAGC 80 8.1566235E-5 26.25 26 GTATGCC 95 8.663241E-6 25.789474 42 TGCCGTC 95 8.663241E-6 25.789474 45 TATGCCG 95 8.663241E-6 25.789474 43 CCGTCTT 95 8.663241E-6 25.789474 47 GAGCACG 95 8.663241E-6 25.789474 29 ATGCCGT 95 8.663241E-6 25.789474 44 CGTATGC 95 8.663241E-6 25.789474 41 CGAGCAC 95 8.663241E-6 25.789474 28 GCCGTCT 95 8.663241E-6 25.789474 46 CGTCTTC 95 8.663241E-6 25.789474 48 TATCTCG 70 0.0011743214 25.0 36 >>END_MODULE