SRR1779703_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779703_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7432
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGT	108	1.4531754574811624	No Hit
ATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTCTT	36	0.48439181916038754	Illumina PCR Primer Index 9 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	21	0.28256189451022606	No Hit
CTTTACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCCGTC	21	0.28256189451022606	No Hit
GTGTATGGTTATCATTTGTTTTGAGGTTAGTTTGATTAGTCATTGTTGGG	12	0.16146393972012918	No Hit
GTAATAGGGCAAGGACGCCTCCTAGTTTGTTAGGGACGGATCGGAGAATT	11	0.1480086114101184	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTTAACAGATCTCGTATGCC	11	0.1480086114101184	No Hit
GGGTATAATTGTCTGGGTCGCCTAGGAGGTCTGGTGAGAATAGTGTTAAT	9	0.12109795479009688	No Hit
GTGTAGGAAGAGGCAGATAAAGAATATTGAGGCGCCATTGGCGTGAAGGT	9	0.12109795479009688	No Hit
ATTTAGGCTTTATGACCCTGAAGTAGGAACCAGATGTCGGATACAGTTCA	8	0.1076426264800861	No Hit
CCCTTCGACCTTGCCGAAGGGGAGTCCGAACTAGTCTCAGGCTTCAACAT	8	0.1076426264800861	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	35	0.0011766693	40.0	42
TGCCGTC	35	0.0011766693	40.0	45
TATGCCG	35	0.0011766693	40.0	43
CCGTCTT	35	0.0011766693	40.0	47
ATGCCGT	35	0.0011766693	40.0	44
GTCTTCT	35	0.0011766693	40.0	49
CGTATGC	35	0.0011766693	40.0	41
GCTTGAA	35	0.0011766693	40.0	56
CTGCTTG	35	0.0011766693	40.0	54
TCGTATG	35	0.0011766693	40.0	40
TTGAAAA	35	0.0011766693	40.0	58
GCCGTCT	35	0.0011766693	40.0	46
CTTGAAA	35	0.0011766693	40.0	57
TCTTCTG	35	0.0011766693	40.0	50
CGTCTTC	35	0.0011766693	40.0	48
CTCGTAT	35	0.0011766693	40.0	39
CTTCTGC	35	0.0011766693	40.0	51
CGTTAAC	40	0.0022679206	35.0	28
ACGTTAA	40	0.0022679206	35.0	27
TCTGCTT	40	0.0022679206	35.0	53