SRR1779701_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779701_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11015
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGT	85	0.7716749886518384	No Hit
ATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTCTT	38	0.34498411257376305	RNA PCR Primer, Index 15 (95% over 21bp)
CTTTACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	25	0.22696323195642307	No Hit
CTATACACATCTCCGAGCCCACGAGACATAAGTTAATCTCGTATGCCGTC	19	0.17249205628688152	No Hit
ATTATGTGTTGTCGTGCAGGTAGAGGCTTACTAGAAGTGTGAAAACGTAG	13	0.11802088061733998	No Hit
GGGTGGGGAAGCGAGGTTGACCTGTTAGGGTGAGAAGAATTATTCGAGTG	12	0.10894235133908306	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGTAC	15	0.0021666242	70.0	3
TGCCGTC	35	0.0012023418	40.0	45
CCGTCTT	35	0.0012023418	40.0	47
TTGAAAA	35	0.0012023418	40.0	58
GCCGTCT	35	0.0012023418	40.0	46
CGTCTTC	35	0.0012023418	40.0	48
TATGCCG	40	0.0023171038	35.000004	43
TGCTTGA	40	0.0023171038	35.000004	55
ATGCCGT	40	0.0023171038	35.000004	44
GTCTTCT	40	0.0023171038	35.000004	49
CGTATGC	40	0.0023171038	35.000004	41
CTGCTTG	40	0.0023171038	35.000004	54
TCGTATG	40	0.0023171038	35.000004	40
TCTTCTG	40	0.0023171038	35.000004	50
CCGAGCC	55	2.806426E-4	31.81818	14
GTATGCC	45	0.004127314	31.111113	42
TCTGCTT	45	0.004127314	31.111113	53
GCTTGAA	45	0.004127314	31.111113	56
CTTGAAA	45	0.004127314	31.111113	57
ATCTCCG	60	4.6743767E-4	29.166666	10