FastQCFastQC Report
Wed 25 May 2016
SRR1779699_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779699_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1860
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCCGATCTTGGTGATGCGGGTGTAGCCGCCGTTGCGCTCGGCCATCGCG20.10752688172043011No Hit
CCCTTGGGTTTCTAAAGTCTATAAAAAGCACTAAGTGAAGATAATAGCAA20.10752688172043011No Hit
GTGTGCCGGAAGCTCGTCCAGTCGGGACGCAGGGCCACCACCAGCGTGTC20.10752688172043011No Hit
GCTCCACGGACCGTCCCGGTCCGCGATCCTCGAGGTCGCGGCTGTCTCTT20.10752688172043011No Hit
GCATTTAAACAAGTGTTCAAAGTTTACATAGCTAATATGAGACAAATGAT20.10752688172043011No Hit
ACATTACAGCAACATTTGCTAGAGGTAGAAAAATTAACATTAAGTAAATA20.10752688172043011No Hit
GCCACTGGAGGCAAACACACGCAGAGCCCAGAGACAGTGGAGGAGCTGCT20.10752688172043011No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)