FastQCFastQC Report
Wed 25 May 2016
SRR1779698_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1779698_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18149
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACAAA150.002189596970.051
GAGGCAT207.720024E-570.019
CCTACGA207.720024E-570.047
GGCATAA150.002189596970.021
AACTGTC150.002189596970.059
TATGTTC150.002189596970.051
CAACTAT150.002189596970.010
TATAACA207.720024E-570.029
CGTGGTA150.002189596970.07
ATAACAA150.002189596970.030
TCGCTCA150.002189596970.069
GCTAAGC207.720024E-570.08
GACAAAC150.002189596970.052
TACGACA150.002189596970.049
AGGCATA207.720024E-570.020
ACGACAA207.720024E-570.050
CGATGAG150.002189596970.018
TAGCGTG150.002189596970.04
AAACAGA252.3285033E-456.00000455
TTATAAC252.3285033E-456.00000428
Produced by FastQC (version 0.11.5)