SRR1779696_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1779696_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11957
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGT	88	0.7359705611775529	No Hit
ATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTCTT	62	0.5185247135569122	TruSeq Adapter, Index 12 (95% over 23bp)
CTTTACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	41	0.34289537509408713	RNA PCR Primer, Index 12 (95% over 21bp)
GTATTAGGAGGGGGGTTGTTAGGGGGTCGGAGGAAAAGGTTGGGGAACAG	24	0.20071924395751442	No Hit
CTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCCGTC	23	0.1923559421259513	TruSeq Adapter, Index 12 (95% over 21bp)
ATATAGGGTCGAAGCCGCACTCGTAAGGGGTGGATTTTTCTATGTAGCCG	15	0.1254495274734465	No Hit
GGTTTATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCG	15	0.1254495274734465	No Hit
CTATAGTTGCAAGCAGGAGGATAATGCCGATGTTTCAGGTTTCTGAGTAG	14	0.11708622564188342	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTACTTGAAATCTCGTATGCC	13	0.10872292381032031	No Hit
GAACAACATATGACGCACTCTCCCCTGAACTCTACACAACATATTTTGTC	13	0.10872292381032031	No Hit
GATTAGTAGTATGGGAGTGGGAGGGGAAAATAATGTGTTAGTTGGGGGGT	13	0.10872292381032031	No Hit
GATGAGGATGGATAGTAATAGGGCAAGGACGCCTCCTAGTTTGTTAGGGA	13	0.10872292381032031	No Hit
GTTGTAGTCCGTGCGAGAATAATGATGTATGCTTTGTTTCTGTTGAGTGT	13	0.10872292381032031	No Hit
ATCTAGGCCTTCTTACGAGCCAAAACCTGCCCCTACTCCTCCTAGACCTA	12	0.10035962197875721	No Hit
GGTAAAAGGAGGGCAATTTCTAGATCAAATAATAAGAAGGTAATAGCTAC	12	0.10035962197875721	No Hit
ATATAGGATTTAGCCTATAATTTAACTTTGACAAAGTTATGAAATGGTTT	12	0.10035962197875721	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCTCAA	15	0.0021712685	70.0	68
GGAAGAG	20	0.0067857113	52.5	24
TATACAC	35	0.0012065726	40.0	3
TTATACA	35	0.0012065726	40.0	2
CTTATAC	35	0.0012065726	40.0	1
TAGGCCT	35	0.0012065726	40.0	4
CCGTCTT	50	1.6115299E-4	35.0	44
GTCTTCT	50	1.6115299E-4	35.0	46
TCTTCTG	50	1.6115299E-4	35.0	47
CTACTTG	40	0.002325209	35.0	25
CTTCTGC	50	1.6115299E-4	35.0	48
GTATGCC	55	2.821116E-4	31.81818	39
ATCTCGT	55	2.821116E-4	31.81818	34
TTCTGCT	55	2.821116E-4	31.81818	49
TCTCGTA	55	2.821116E-4	31.81818	35
ACGAGAC	55	2.821116E-4	31.81818	19
CGTATGC	55	2.821116E-4	31.81818	38
CTGCTTG	55	2.821116E-4	31.81818	51
TCGTATG	55	2.821116E-4	31.81818	37
TTGAAAA	55	2.821116E-4	31.81818	55